LOCUS       NZ_OY856408             4473 bp    DNA     circular CON 15-DEC-2023
DEFINITION  Klebsiella pneumoniae strain KP1462023BGR isolate KP1462023 plasmid
            P_KP1462023_5, complete sequence.
ACCESSION   NZ_OY856408
VERSION     NZ_OY856408.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114785894
            Assembly: GCF_963693505.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Ivanov,I., Teneva,D. and Stoikov,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-DEC-2023) NCIPD, CMAR, Yanko Sakazov 26 Sofia,
            Bulgaria
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/15/2023 00:13:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,600
            CDSs (total)                      :: 5,482
            Genes (coding)                    :: 5,275
            CDSs (with protein)               :: 5,275
            Genes (RNA)                       :: 118
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 207
            CDSs (without protein)            :: 207
            Pseudo Genes (ambiguous residues) :: 0 of 207
            Pseudo Genes (frameshifted)       :: 122 of 207
            Pseudo Genes (incomplete)         :: 93 of 207
            Pseudo Genes (internal stop)      :: 25 of 207
            Pseudo Genes (multiple problems)  :: 27 of 207
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY856408.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4473
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP1462023BGR"
                     /isolate="KP1462023"
                     /isolation_source="human urine"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="P_KP1462023_5"
                     /geo_loc_name="Bulgaria"
                     /lat_lon="43.225887 N 27.936721 E"
                     /collection_date="2023-01-17"
     gene            1..167
                     /locus_tag="U5A18_RS27975"
                     /pseudo=""
     CDS             1..167
                     /locus_tag="U5A18_RS27975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001505258.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /name="replication initiation protein"
     gene            497..1555
                     /locus_tag="U5A18_RS27980"
                     /old_locus_tag="KP1462023_27740"
     CDS             497..1555
                     /locus_tag="U5A18_RS27980"
                     /old_locus_tag="KP1462023_27740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012508929.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="WP_042109829.1"
                     /translation="MAIYAVWNNKGGVGKSYLTFQLASEYARQNPTKKVLVVDLCPQAN
                     SSSMLLGGMINGENTLNQIHSAIQRKTISGYIEDRIRSPYIPTNTGSSYVINVSTHNSK
                     VPNNLYLVTGDEQLELQASRVVGASFPGPHDAWRTVHLWINDLISDICNSWNNEDSCVF
                     IDCNPSFSIYTELALTAAERLLIPFSADGSSKRAVKAVLSLVYGERRHQNEPQSDFYLN
                     SNRYSMSLPQIYMYVGNRLTQMNNSSASAFKTVVTEIGDEIWKVWQTKPSLFCIHPNGS
                     STPNNKRSFRNMFQYEVNDANTASVVSGALGIPIATLTAGNKTVSGKIIKVNQTQLDKQ
                     VPNIVALAGMIE"
                     /name="ParA family protein"
     gene            complement(1585..1842)
                     /locus_tag="U5A18_RS27985"
                     /old_locus_tag="KP1462023_27745"
     CDS             complement(1585..1842)
                     /locus_tag="U5A18_RS27985"
                     /old_locus_tag="KP1462023_27745"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_065953843.1"
                     /translation="MGSNNNQNKDLQDKQADLLDQTYTLGWMDGYAEGYDDAIEDTQNA
                     LNKLENENELLTEIVESKDNVIKELASSAGRALQAVKKNK"
                     /name="hypothetical protein"
     gene            2260..2691
                     /locus_tag="U5A18_RS27990"
     CDS             2260..2691
                     /locus_tag="U5A18_RS27990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001025244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6530 family protein"
                     /protein_id="WP_064185166.1"
                     /translation="MKIPAHLKHKPIIQVENYDRIDGPHADDTDAMGLSVGIAQWNTPG
                     WTELSAKVWRNTGEKWSRQSEELPLHRVIDLATLICITIDYSKNGRLSSSDDFPVTRST
                     DNPELAHHTEFMKKELKQNKSNLDVSLKRLSTELKRLGY"
                     /name="DUF6530 family protein"
     gene            complement(3466..3867)
                     /locus_tag="U5A18_RS27995"
                     /old_locus_tag="KP1462023_27750"
     CDS             complement(3466..3867)
                     /locus_tag="U5A18_RS27995"
                     /old_locus_tag="KP1462023_27750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009310048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="WP_302008948.1"
                     /translation="MARVSISEAARLTGKSRTTLHRLIKVGDLSTCSGERNAKMVDTSE
                     LLRVFGPFEQPKGEHHSGQVSEQRDTASADQSEQVIRHLKQEIEHLNTLLLSKDSHIDS
                     LKQAMLLLENHQAKLTESPAPWWKFWKKS"
                     /name="DNA-binding protein"
     gene            complement(3867..4058)
                     /locus_tag="U5A18_RS28000"
                     /old_locus_tag="KP1462023_27755"
     CDS             complement(3867..4058)
                     /locus_tag="U5A18_RS28000"
                     /old_locus_tag="KP1462023_27755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000166328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_023302508.1"
                     /translation="MTKQQKTALNMAKFIQNQSLLLLEKLNELDLDVEADLCEKLHDDA
                     EHLFRTLSSRLDELQDGN"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          2..298
                     /name="rep_cluster_2358"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.317"
                     /coverage="94.0"
                     /evalue="1.18e-54"
     Typing          4180..4473
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.271"
                     /coverage="99.0"
                     /evalue="2.9e-134"
ORIGIN
        1 atgcacgaac cccccgttca gtccgactgc tgcgcctgtt ccggtaactt tcgacttgag
       61 tccaacccgg aaggcacgac aaaacgccac tggcagcagc cactggtaag gggtgtacaa
      121 gaattactgg tgcagagttc ttgaagttac agcctaacta cagctaaact gaaaggacag
      181 atttggtggc agcggtcttg tacaccctgt taccacggtt cagaagttcc ccaacttact
      241 gatccttcga aaaaccacct ccccaggtgg ttttttcgtt tacagagcaa aagattacat
      301 cccgcaggtt aggatctcaa gaagatcctt ttaatcggaa ttcgacaact ccagataagt
      361 catggtgagc cagccaaccc cttcgactga atatcgttcc aaaaaaaggc agtcagctga
      421 aagaaactaa cagtagaaca ataatctcta gtaccctgaa tctaagctaa caacaaaact
      481 agattaggag ttatagatgg cgatctatgc cgtatggaat aacaagggtg gtgtagggaa
      541 aagttacctt acttttcagt tagcctctga atatgccaga cagaacccta ctaaaaaggt
      601 cctggtggtt gacctgtgcc cacaagcgaa ctcgtcctct atgttacttg gtggaatgat
      661 aaatggcgaa aacacactaa accagattca ttcagcaata cagagaaaga caatatctgg
      721 atatattgag gataggatca gaagtccata tattcctacc aacactggtt ctagctatgt
      781 aataaatgta tctacacaca atagtaaagt tccaaataat ctatatcttg tcactggcga
      841 tgaacaatta gaactccaag catcaagagt tgttggggca tcatttccag gtccccatga
      901 tgcatggcgt actgttcacc tctggattaa tgatttaatc agtgacattt gcaactcatg
      961 gaataatgaa gatagctgcg tattcattga ctgcaaccct agcttctcta tttatacaga
     1021 gttagcttta accgcagcag agcgcctttt aattcctttc tctgccgatg gttcatcaaa
     1081 gagagcagtt aaggctgtac tttctttagt ttatggtgag cgtcgccatc agaatgaacc
     1141 acaatcagat ttctatctta atagcaatcg ttattctatg tcgctaccac aaatatatat
     1201 gtatgttgga aatagattaa cgcaaatgaa caattcatct gccagtgcat ttaagacggt
     1261 agtaaccgaa attggtgatg aaatttggaa agtatggcaa acaaaaccaa gtctgttttg
     1321 tattcaccca aatgggagct caacgccaaa taataaaaga tctttcagga atatgtttca
     1381 gtatgaagta aatgatgcaa acacagcatc tgtcgtatct ggagccttag gtattccaat
     1441 cgcgacatta actgcaggaa ataaaactgt ttcaggaaaa ataataaagg ttaatcagac
     1501 gcagctagat aaacaagtcc ccaacattgt agctctcgct ggtatgatcg aataaaatag
     1561 caaggccctt aaaagggcct ttttttattt gtttttcttt actgcttgca gcgccctgcc
     1621 agcactagag gccaactctt tgattacatt atctttactt tcaacaatct cagtaagcaa
     1681 ctcgttttcg ttttccagtt tattcaaagc gttctgagta tcttcaatag catcatcata
     1741 cccttcggca tagccatcca tccaaccaag agtatacgtt tggtccaaaa gatcagcttg
     1801 cttatcctgc agatctttat tctgattatt gttagagccc atgttttttc ctcatttgtt
     1861 ggcgcatctg agttttcaaa ccaggaggaa ttccatttct aagtttctca cttagtctga
     1921 ctggtggtgt gtttcctgag actggattac agtcagcatc caccccgaca tctttctttt
     1981 tatagtcgcc aatattccta acgttatctg tagtcataga aaaccacgcc cattgctgtg
     2041 aataaccgaa ctataaacca gaaaaaaaac gtacggctta tcataacact tgacacaaaa
     2101 aaacaccgct actctccaag caaaaaacat aaaattggaa aaacaaaatc acaagcacat
     2161 gataacaata gatattaata tttacttaca tttagtgagt tttataatta gaaaaacaat
     2221 gtaatttaat aatcacaaac attacctaag gacgaactga tgaaaatacc cgcgcatttg
     2281 aagcataaac caattattca agtcgaaaat tacgaccgca ttgacggccc acatgccgat
     2341 gacactgatg ctatggggct atctgtaggt attgctcaat ggaacactcc tggatggact
     2401 gagctttcgg caaaggtttg gcgaaacaca ggagaaaaat ggtcaagaca atcagaagag
     2461 ctgcctcttc accgggtaat cgaccttgca actctgatct gtatcaccat agactacagt
     2521 aaaaatgggc gactttcatc cagtgatgat tttcccgtga ctcgctcaac tgataaccct
     2581 gagctagcac atcacactga gtttatgaaa aaagagttaa aacaaaataa aagcaatctt
     2641 gatgtaagcc tcaaacgcct ctcgactgaa ttgaagagac ttggctatta aaactagctt
     2701 tagaaatgtc tacctacttc acagacgaat ttaccataac atccgttatc agcatcgtca
     2761 gaaacgcgct gagggcgttt ctgacgggaa accggtaaaa caggcaacaa accacccgaa
     2821 aacccgccag aaacgcgcag gctctgtttt tatggcatgc atgagtatgc acgcaagtgc
     2881 atagcgcgaa tattcacgcc attcagacag ggtaagtcct gtttccggcg ttcttcccat
     2941 ccgaaaacgg tgaacgggga cgcaatttat tgcgtggccg tgaagcgttg ccggcgcagc
     3001 cggaaaaccg gttttcagca cgttcaggaa tcgggttcgt cgacggccgg caatcacgtt
     3061 atggcaagtc gccggacgac tcaccacacg attcaccggc gactcttcac tagagtcgta
     3121 cccagagtcg ccgcgtctaa aaaacaacca aacggggagt cgtgtctaga gtcgggtcgt
     3181 tattaactta ttgtttttat agtcctgagt cgttaccgac tctatgacga ctcgccgggg
     3241 actctatgac gagtcgtcat agagtcggat ctatataaat aaaatttaaa aaacgaaatt
     3301 tcaggaaagt aacccactga tattaaatac aaatctgcaa aatattaatt ttgcgtgggg
     3361 tgtgggtatt tttagtggtg aggagcgttc agagatctga cgatttttgg gaaggttcag
     3421 gaactccccg ggatggccgg agaggaaaac tgaagcatga cggggtcagg attttttcca
     3481 gaatttccac catggcgccg gggattcagt taattttgcc tggtgatttt cgagaaggag
     3541 catggcctgt ttcaggctgt caatgtgcga atccttggac aaaagtaagg tattcaggtg
     3601 ttcaatctcc tgtttcagat gacgaatcac ctgttcactc tggtcagcag aggctgtatc
     3661 acgctgttca gagacctgtc cagaatggtg ttcacccttc ggttgctcaa agggaccaaa
     3721 gacacgtaaa agctctgaag tatctaccat ttttgcattg cgttcaccgc tacaggtgga
     3781 caggtcacct actttaatca acctgtgcag tgttgttcta ctcttacccg tcagtcgggc
     3841 agcctcacta atagacactc tggccatcag ttaccatcct gtaattcatc cagtctcgag
     3901 gacagtgtac ggaaaagatg ctccgcatca tcgtggagtt tctcacaaag gtcggcctca
     3961 acatcgagat caagctcgtt aagcttctcc agcaggagca gagactgatt ctggatgaat
     4021 ttagccatgt tcagcgctgt tttctgttgt ttcgtcataa gaagcctcag agcgtcagtg
     4081 ctcagtgtaa gaacagtctc ttttccgctt cctcgctcac tcagtcgcta cgctcctgcc
     4141 gttcggctgc ggcgagcggc aggagcatgc gtgtaaaagc tcgagaaaac cgagcggtcg
     4201 cgtgacgggg aaaaggaaag gccgcttagc ggccgttttt ccataggctc cgcccccctg
     4261 acaagcatca cagaagctga cgctcaaatc agtggtggcg aaacccgaca ggactataaa
     4321 gatatcaggc gtttccccct gatggctccc tcgtgcgctc tcctgttcct gcctttcggt
     4381 ttaccggtgt cattccgctg ttatggccgc gtttgtctca ttccacgcct gacactcagt
     4441 tccgggtagg cagttcgctc caagctggac tgt
//
