LOCUS       NZ_OY757126             5272 bp    DNA     circular CON 05-NOV-2023
DEFINITION  Escherichia coli isolate F787 plasmid pF787-3, complete sequence.
ACCESSION   NZ_OY757126
VERSION     NZ_OY757126.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542909
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/05/2023 19:09:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 183
            CDSs (total)                      :: 183
            Genes (coding)                    :: 146
            CDSs (with protein)               :: 146
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 15 of 37
            Pseudo Genes (incomplete)         :: 32 of 37
            Pseudo Genes (internal stop)      :: 5 of 37
            Pseudo Genes (multiple problems)  :: 12 of 37
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY757126.1.
            Complete plasmid sequences of E. coli strain F787.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5272
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F787"
                     /db_xref="taxon:562"
                     /plasmid="pF787-3"
     gene            join(5167..5272,1..218)
                     /locus_tag="SBO98_RS00880"
                     /old_locus_tag="FGAF787_47380"
     CDS             join(5167..5272,1..218)
                     /locus_tag="SBO98_RS00880"
                     /old_locus_tag="FGAF787_47380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000955993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_186210782.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIERELRSLRQVVRGQGAR
                     DDC"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            427..>858
                     /locus_tag="SBO98_RS00885"
                     /pseudo=""
     CDS             427..>858
                     /locus_tag="SBO98_RS00885"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            896..1414
                     /locus_tag="SBO98_RS00890"
     CDS             896..1414
                     /locus_tag="SBO98_RS00890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001447511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_012615288.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTETMLNDEFSKLEKSVSKAVTSNE
                     TKIKDAIALFTASTEESLKKHREGVKEAMMQHRKDVLKLAGNTGMMLLGMVIFLFTVSG
                     GTLWYLGGRIQANLEEIRIQEETLQKLNAKTWGVEFVQDGRRKFLVIPQGKSATVIPYQ
                     GKDWVQLTE"
                     /name="MbeB family mobilization protein"
     gene            1421..1654
                     /locus_tag="SBO98_RS00895"
     CDS             1421..1654
                     /locus_tag="SBO98_RS00895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_191635672.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWESAFVELQKMFSFTQQDNA
                     MLNEQVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1685..1852
                     /locus_tag="SBO98_RS00900"
     CDS             1685..1852
                     /locus_tag="SBO98_RS00900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001317076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="WP_310984411.1"
                     /translation="MRYPWSVSASWKYRNAHWMVLRCRCDGETMKNGRLSGLRRANVVC
                     TIWLHRYSCG"
                     /name="mobilization protein"
     gene            complement(1987..2811)
                     /locus_tag="SBO98_RS00905"
                     /old_locus_tag="FGAF787_47400"
     CDS             complement(1987..2811)
                     /locus_tag="SBO98_RS00905"
                     /old_locus_tag="FGAF787_47400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000213997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000213997.1"
                     /translation="MTTTIYREFEFAACDSKWSVDGHLRRDVIEKKAIHIDFKGKEAIS
                     LMCGDHPMIVLMQAMQLKVITPEQYASLMSLYMDVEDFTFGMVVLDKHSGAILVGMYTP
                     PMIAIKSKQIVYDLGSTGGEFAAHCLYYAEKRLRKKKRHRGYSTSSVGCKITSAVKYAY
                     RRDRYSGGKVYKIIWKNNGIMYNNIPLSNNSVKNHYRRILKETLKIIHSRYEEKINMRQ
                     NAQLNTAAASLSQTGQPKTQSQPHNQAPSASADKSHQMTMSRAINYARLFSD"
                     /name="hypothetical protein"
     gene            complement(2867..3403)
                     /locus_tag="SBO98_RS00910"
                     /old_locus_tag="FGAF787_47410"
     CDS             complement(2867..3403)
                     /locus_tag="SBO98_RS00910"
                     /old_locus_tag="FGAF787_47410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001555327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_024218429.1"
                     /translation="MKDDKAVVVFTGKDLNIMRAEGGSGYWLAKAERLNDAKYLIAVRN
                     RRETWAVKDLEHGTGFLIAKITGCFKNPDYDDRNVITFEEYAEISVKKAWKMLTGGQRY
                     PVAYLTAEEAFSRIGITLEQLEWKKLQTSTLSQPIPSAEAPKKLSLNEAVERAKQDISN
                     ATDIDVSSITITINI"
                     /name="hypothetical protein"
     gene            complement(4911..5102)
                     /locus_tag="SBO98_RS00915"
                     /old_locus_tag="FGAF787_47430"
     CDS             complement(4911..5102)
                     /locus_tag="SBO98_RS00915"
                     /old_locus_tag="FGAF787_47430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165985.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENL"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          4749..4830
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.795"
                     /coverage="100.0"
                     /evalue="6.23e-34"
     Typing          complement(4199..4736)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="86.225"
                     /coverage="99.0"
                     /evalue="3.84e-164"
     Typing          4..212
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="87.143"
                     /coverage="97.0"
                     /evalue="1.28e-29"
     Typing          209..1752
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.559"
                     /coverage="99.0"
                     /evalue="0.0"
     Typing          5138..5271
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="97.0"
                     /evalue="1.1500000000000002e-21"
ORIGIN
        1 ttgcacgctc cgggaagctg ccgacactgg caccgccgtt actgcgtcag ctggccgcca
       61 tcgggaataa cctgaatcag acagcgagga aggtgaacag cgggcagtgg tcttccggcg
      121 accgggttca ggtggtggcc gcactgatgg ccatcgagag agagttgcgc agcttacggc
      181 aggtcgtcag gggacaggga gcgcgggatg attgttaaat ttcatgccag gggaaaaggc
      241 ggtggcagtg gtccggttga ttacctgctg ggaagggagc gaaaccggga aggggcaacg
      301 gtgcttcagg gtaatccgga agaagtccgg gaactcatcg atgccacgct atttgcgaag
      361 aaatacacgt ccggtgttct gtcgttcgca gagaaggagc tgccgccggg aggacgtgaa
      421 aaagtgatgg cgagctttga gcgcgtactg atgcccggtc tcgaaaaaaa tcagtacagc
      481 attctgtggg tggagcacca ggacaagggg cggcttgagc tgaattttgt cattccgaac
      541 atggagctac agaccggaaa acgcctccag ccgtactatg accgggcaga caggccgaga
      601 attgatgcct ggcagacgct ggtgaatcac cattacgggc tgcatgaccc caacgccccg
      661 gagaaccgca ggacgctgac actccctgat aacctgccgg aaacgaaaca ggcgcttgca
      721 gagagcgtca cacgcgggat agacgctctt tatcatgtcg gggagataaa aggccgtcag
      781 gatgtgattc aggcgctcac agaggcaggg cttgaagtgg tcagggtgac gcgaagcagt
      841 atcagcattg cagacccgaa cggtgggaag aatatcaggc tgaaaggagc attctatgag
      901 caatctttta cagacgggcg cggagttcga gaaaaagctg aaagagagag ccgaatctac
      961 agagacaatg ctgaacgacg agttcagcaa gctcgaaaaa tctgtaagca aggctgtgac
     1021 atcaaacgag acgaaaatca aagacgctat agccctgttc acagcttcga cagaggaatc
     1081 actgaaaaaa caccgggaag gggtgaaaga ggcgatgatg cagcacagga aggacgtgtt
     1141 aaagctggca gggaatacgg gcatgatgtt actggggatg gtcattttcc tgtttaccgt
     1201 gagtggcggg acgctctggt atcttggcgg gcggatacag gcgaacctgg aagaaatcag
     1261 gatacaggaa gaaacattgc agaaactgaa cgcgaagaca tggggcgtgg agtttgtgca
     1321 ggacgggaga aggaaatttc tggtcatccc gcaggggaaa tcggcaacgg tgattcccta
     1381 tcaggggaag gactgggtac aactgacgga gtgacacaga gtgacggagc tggaaagaca
     1441 tttgctgaac gccttagagc aactgcaaca ggactatatg cagcggctga acgaatggga
     1501 gagcgccttc gtggaattgc agaaaatgtt ttcgtttacg caacaggaca acgcgatgct
     1561 gaacgagcag gtcatgcagt tgagtcagca ggtacagcac ttgagcgagc ggacagaacg
     1621 cttgagccag ttatacagcg agaacaggag ataagggacg aacggctgat acaggaacgc
     1681 gaacatgcgt tatccctgga gcgtgagcgc cagctggaaa tacaggaacg cacactggat
     1741 ggtccttcgt tgtcgctgtg atggtgaaac catgaaaaat ggcaggttaa gtggattaag
     1801 acgggctaat gtggtctgta ccatctggtt gcataggtat tcatgcggtt aaaatttatc
     1861 aggcgcgatc gcggcagttt ttcgggtggt ttgttgccat ttttacctgt ctgctgccgt
     1921 gatcgcgctg aacgcgtttt agcggtgcgc gtaataaggg attatggtaa atctagctgt
     1981 acagtatcag tcagaaaaaa ggcgagcata gttaatggct cgagacatag tcatctgatg
     2041 gcttttatca gcactcgcac taggtgcttg gttatgtggc tgactttgtg ttttcggctg
     2101 acccgtctga gagagcgagg ctgccgctgt atttaactgg gcattctgtc tcatgtttat
     2161 tttctcttcg tacctgctat gaatgatctt taatgtttct tttaaaatcc gccggtaatg
     2221 gttttttacc gagttgttag ataacggtat gttgttgtac atgatgccgt tatttttcca
     2281 aatgattttg tatactttac caccggagta gcgatctcgt ctgtatgcat atttgacagc
     2341 gctggtgatc ttacatccca ctgacgatgt agagtatcca cgatgacgct ttttttttct
     2401 aagccttttt tccgcatagt agagacaatg tgctgcaaat tcgccgccag ttgaacctaa
     2461 atcgtaaact atttgtttgc tttttatcgc aatcatcggg ggggtataca tacctactaa
     2521 tatagcacct gagtgtttat cgaggaccac catgccgaag gtgaagtctt ctacatccat
     2581 gtagagactc attaagctag cgtactgctc tggagttatg actttcagct gcatagcttg
     2641 cataaggacg atcatcggat gatcaccaca cataagggat attgcttctt ttcctttgaa
     2701 atctatatgt attgcttttt tttcaataac atctcttcga agatgtccat caactgacca
     2761 tttgctatca caagcagcaa attcaaactc tctgtatatt gttgttgtca tatcaatggc
     2821 ttaattcttt ttcgactatc gttaagatac cagatatacg aaaaaatcag atattgatag
     2881 ttatcgtaat agaagataca tcgatatcag ttgcattgct tatatcttgc ttagctcttt
     2941 caactgcctc gttgaggctt agttttttcg gcgcttctgc agaggggatt ggctgagata
     3001 gtgttgaagt ctggagtttt ttccactcca gctgctctag cgttatccct atacgggaaa
     3061 aagcttcctc tgctgtcaga taagcaaccg gataacgctg accgccagtt agcattttcc
     3121 atgccttttt cactgaaatt tcagcatatt cctcaaatgt aattacgttt ctgtcgtcgt
     3181 aatcagggtt tttaaagcat ccggtgatct ttgcaatcag aaagccagtt ccgtgttcga
     3241 ggtctttcac cgcccatgtt tctctccggt ttcttactgc gatgagatat ttggcgtcat
     3301 taagccgttc tgcttttgct agccaataac ctgaacctcc ttcagctctc attatgttta
     3361 gatctttgcc tgtaaatacg acaactgctt tatcatcttt catatagaaa tcccatgctt
     3421 tagtttttta tcgtcatgat tttgattata tacgattaaa ttagggggtt gggttttatt
     3481 tatgcgataa aagcaagtct acaaattctg tgcttatctc tttcttattt ttgcttattt
     3541 tgtccttaag ttgtttttat ttgattttat atttttttat gtgtatctta ttttgatgtt
     3601 attctttttg ggggttatat gtcgatatct atgcagcaaa tagattcatg tattgaaacg
     3661 accatcaatc gtctttctag cgaagctggt acgatggtta gtaatttcta tcttgacctg
     3721 cgctctcccg gtagacagcg cattactgaa aagctggtag agcaatcaat agatctttgc
     3781 aggtctcgtg gtatctatgc tgagcgggaa ggtaatgggt tgcttgtgag agtagatctg
     3841 agaacgtgct atctgaatcc aggtcaagct gaaatgttta atatagctat tggatatacg
     3901 cgttcagttc acgggaatca tctataagct gtctacaaaa aggatcttct tgagatcctt
     3961 tttttctacg cgtaatctct agctctgaaa acgaaaaaac caccctggca ggtggttttt
     4021 cgaaggttag ttaatcctgg cagattctct aaccgtggta acagtcttgt gcgagacatg
     4081 ccaccaaatc tgtccttcca gtgtagccgc actaagggca ccacttcaag aactctcgat
     4141 acatctctcg cacatcctgt ttaccaatgg ccgctgccag tggcgttttg tcgtgtcttt
     4201 ccgggttgga ctcaagtcga tagttaccgg ataagacgca gcggtcggac tgaacggggg
     4261 gttcgtgcat acagtccagc ttggagcgaa ctgccttccc ggaaccgagt gtcaggcgtg
     4321 gaatgagaca aacgcggcca taacagcgga gtgacaccag taaaccgaaa ggtaggaaca
     4381 ggagagcgca cgagggagct tccaggggga aacgcctggt atctttatag tcctgtcggg
     4441 tttcgccacc tctgacttga gcgtcgattt tgtgatgctc gtcagggggg cggagcctat
     4501 ggaaaaacgc cagcggcgtg gccttttccg ggttctcgtt ttttgctcac atgtttcttt
     4561 tggcgttatc ccctgattct gtggataacc gtattaccgc ctttgagtga gccgactccg
     4621 ctcgccgcag ccgaacgacc gagcgtagcg agtcagtgag cgaggaagcg gaagagcgcc
     4681 ggaacgtgca ttttctcctt acgcatctgt gcggcatttc acaccgcata tggcgctctt
     4741 ttcttacaat ctgcactgat gccgcatgat taagccagta tacactccgc tatcgctacg
     4801 tgactggttc agggcttcgc cccgaaaccc cctgacgcgc cctgacgggc ttgtctgctc
     4861 ccggcatccg ctaacagaca agctgttacc gtctccggga gctgtatgtg tcagaggttt
     4921 tcaccgtcat ccccgaagcg tgcgaggcag ctgcggtaaa gctcgtcggc gtggtcgtga
     4981 agtgattcac aaatatcggc ctgttcatct gcgtccagtt cgttgagttt ctccagcagc
     5041 gttaatgtct ggcttctgat aaagcgggcc atgttaaggg cggttttttc ctgtttagtc
     5101 actgatgcct ccgtgtaagg gggatttctg ttttatgggg taatgatacc gatgaaacgc
     5161 gagaggatgc tcaccatacg ggttactgat gatgaacatg cccggttact ggaacgctgt
     5221 gagggtaaac aactggcggt atggatgcgg cgggtctgcc tgggtgagcc gg
//
