LOCUS       NZ_OY757125             5631 bp    DNA     circular CON 05-NOV-2023
DEFINITION  Escherichia coli isolate F787 plasmid pF787-2, complete sequence.
ACCESSION   NZ_OY757125
VERSION     NZ_OY757125.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542909
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/05/2023 19:09:15
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 183
            CDSs (total)                      :: 183
            Genes (coding)                    :: 146
            CDSs (with protein)               :: 146
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 37
            CDSs (without protein)            :: 37
            Pseudo Genes (ambiguous residues) :: 0 of 37
            Pseudo Genes (frameshifted)       :: 15 of 37
            Pseudo Genes (incomplete)         :: 32 of 37
            Pseudo Genes (internal stop)      :: 5 of 37
            Pseudo Genes (multiple problems)  :: 12 of 37
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY757125.1.
            Complete plasmid sequences of E. coli strain F787.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5631
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F787"
                     /db_xref="taxon:562"
                     /plasmid="pF787-2"
     gene            complement(join(4680..5631,1..101))
                     /locus_tag="SBO98_RS00840"
                     /old_locus_tag="FGAF787_47370"
     CDS             complement(join(4680..5631,1..101))
                     /locus_tag="SBO98_RS00840"
                     /old_locus_tag="FGAF787_47370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001053268.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGKGGYSHPEGISTTWHSESNLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIENSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGIPVDDASMFFNSFQPRKFE
                     NKPLYEKEDD"
                     /name="hypothetical protein"
     gene            complement(582..815)
                     /locus_tag="SBO98_RS00845"
                     /old_locus_tag="FGAF787_47320"
     CDS             complement(582..815)
                     /locus_tag="SBO98_RS00845"
                     /old_locus_tag="FGAF787_47320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137437.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENRR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(822..1352)
                     /locus_tag="SBO98_RS00850"
                     /old_locus_tag="FGAF787_47330"
     CDS             complement(822..1352)
                     /locus_tag="SBO98_RS00850"
                     /old_locus_tag="FGAF787_47330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001673158.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            complement(<1390..2088)
                     /locus_tag="SBO98_RS00855"
                     /pseudo=""
     CDS             complement(<1390..2088)
                     /locus_tag="SBO98_RS00855"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(2030..2353)
                     /locus_tag="SBO98_RS00860"
                     /old_locus_tag="FGAF787_47340"
     CDS             complement(2030..2353)
                     /locus_tag="SBO98_RS00860"
                     /old_locus_tag="FGAF787_47340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000955999.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAVWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALMAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            2418..2609
                     /locus_tag="SBO98_RS00865"
                     /old_locus_tag="FGAF787_47350"
     CDS             2418..2609
                     /locus_tag="SBO98_RS00865"
                     /old_locus_tag="FGAF787_47350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165975.1"
                     /translation="MTKQEKTALNMARFIRGQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            complement(2632..2952)
                     /locus_tag="SBO98_RS00870"
     CDS             complement(2632..2952)
                     /locus_tag="SBO98_RS00870"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_187655770.1"
                     /translation="MDNRVSVFEKGESARRSRTTERSESVSEEAEERLNWHFLLTHLCG
                     ISHRTWRTFHTIRTDAEWLSQYTLRYRYVTGSGLRPDTPKVNGLTRPGGLVCSRHPLTD
                     KL"
                     /name="hypothetical protein"
     gene            complement(3812..4687)
                     /locus_tag="SBO98_RS00875"
                     /old_locus_tag="FGAF787_47360"
     CDS             complement(3812..4687)
                     /locus_tag="SBO98_RS00875"
                     /old_locus_tag="FGAF787_47360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /GO_function="GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /GO_process="GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="WP_000609294.1"
                     /translation="MINMIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSA
                     VILSWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLES
                     VFILVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLS
                     AAFYVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGIL
                     QYFLAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSV
                     YFLNRKYSEE"
                     /name="DMT family transporter"
     Typing          complement(2704..2785)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="1.3400000000000002e-35"
     Typing          complement(3242..3429)
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          complement(479..2040)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 gtttcgttaa agataaatga atgaatatta tcaatatctt ttccaaatga aaaactggat
       61 gataattgtg gtagtttatt tatacgttgt tgaagattca tgaaagctcc cacaagacac
      121 ctcatatatt tttttatata ctgaaactac attatattta ttaccggcgt aaaacgaaat
      181 aatttattat cgttaccgat attttaaaaa aatcattatt tgcacagtgt tcgagttgtt
      241 agtatcactc cttcctgaaa atccgctcca tttaccataa cgtcgcattg tacgcaccgc
      301 caaaacgcgt tcggtgcgat cacggcagca gacaggtaaa aatggcaaca aaccacccga
      361 aaaactgccg cgatcgcacc tgataaattt taaccgcatg aatacctatg caaccagatg
      421 ctacaggcca cattagcccg ccttaatcca ctgaacacgt catttttcat ggtttcacca
      481 tcccagcgaa gggccatcca gtgtccgctc ctggatttcc ggctgacgct cccgctccag
      541 agataactca tgttcgcgtt cctgcatcag ccgttcatcc cttatctcct gttctcgctg
      601 tataactggc tcaagcgttc tgtccgctcg ctcaagtgct gcacctgctg actcaactgc
      661 atgactcgcc cgttcagcat cgcgttgtcc cgttgcgtaa gcgaaaacat tttctgcaat
      721 tccacgaagg cgttctccca ttcgttcagc cgctgcatat agtcctgttg cagttgctct
      781 aatgcgttca gcaaatgtct ttccagctcc gtcatgctct gtcactcctg caccagtctc
      841 actgcgttca gtttgccgtt gtccttcgtc cagttcgttt cggctttcat ccccttcggc
      901 aacaccagaa aacgtccgtt gctgtcctcg tgataacgca cgccccatgt cttcgcgttc
      961 agcttctcca gactctcttt ctgctcgcgg agaatattca tattcgcgtt tatcttcatg
     1021 ccctggtacc acagcagact cccggtcgtg gcaaacatca gtactgagac gataatcagc
     1081 cacagccagc gtttcacgct cattttcagt acggttttcc agtgcgcgtc catcgtatcg
     1141 acggtcgttt tctgatacct ctccagcagt tctttcaggg ctgttgtatg gtcgttgata
     1201 gcgttcctga ttaaagattc gtttgaggtc agttccctgt ttacagattc ttcgagcttc
     1261 ctgaactcgt cgttcagcat tttctctgta gattcggctc tctctttcag ctttttctcg
     1321 aactccgcgc ccgtctgtaa aagattgctc ataaaacgct cctttcagtc tgatattcct
     1381 cccgccgttc gggtctgcaa tgctgatact gcttcgcgtc accctgacca cttcaagccc
     1441 cgcctctgtg agcgcctgaa tcacatcctg acggcctttt atctctccgg catggtaaag
     1501 cgcgtctatc ccgcgtgtga cgccctcagc aagcgcctgt ttcgtttccg gcaggttatc
     1561 aggaagggtc agcgtccggc ggttctccgg ggcgttgggg tcatgcagac cgtaatggtg
     1621 attcaccagc gtctgccagg catcaattct cggcctgtct gcccggtcgt agtacggctg
     1681 gaggcgtttt ccggtctgta gctccatgtt cggaatgaca aaattcagct caagccgtcc
     1741 cttgtcctgg tgctccaccc acaggatgct gtactgattt ttctcgagac cgggcatcag
     1801 tacacgctca aagctcgcca tcactttttc acgccctcca ggcggcagct ccttctccgc
     1861 gaacgacaga acacctgacg tgtatttctt cgcaaatggc gtggcatcga tgagttcccg
     1921 gacctcttcc ggattcccct gaagcaccgt tgccccttcc cggttacgct cccttcccag
     1981 caggtaatca accggaccac tgccaccacc ttttcccctg gcatgaaact taactatcat
     2041 cccgcgcccc ctgttccctg accgccagac gcagccggcg cagctcatcc ccgatggcca
     2101 tcagtgcggc caccacctga acccggtcac cggaagacca ctgcccgctg ttcaccttcc
     2161 tcgctgtctg gttaaggtta ttcccgatgg cggccagctg acgcagtaac ggcggtgcca
     2221 gtgtcggcag cttcccggaa cgggcaaccg gctcacccag gcagacccgc cgcatccata
     2281 ccgccagttg tttaccctca cagcgttcca gtaaccgggc atgttcatca tcagtaaccc
     2341 gtatcgtgag catcctctcg cgtttcatcg gtatcattac ccccatgaac agaacccccc
     2401 cttacacgga ggcatcagtg accaaacagg aaaaaaccgc ccttaacatg gcccgcttca
     2461 tcagaggcca gacattaacg ctgctggaga agctcaacga actggacgcg gatgaacagg
     2521 cagacatctg tgaatcgctt cacgaccacg ccgatgagct ttaccgcagt tgcctcgcac
     2581 gcttcgggga tgacggtgaa aaccgctgac acatgcagct cccggagacg gtcacagctt
     2641 gtctgtgagc ggatgccggg agcagacaag cccgccaggg cgcgtcaggc cgttgacctt
     2701 tggggtgtcg gggcgaagcc ctgacccagt cacgtagcga tagcggagtg tatactggct
     2761 taaccattcg gcatcagtgc ggattgtatg aaaagtgcgc catgtccggt gtgaaatgcc
     2821 gcacagatgc gtaaggagaa aatgccagtt caggcgctct tccgcttcct cgctcactga
     2881 ctcgctacgc tcggtcgttc ggctgcggcg agcggactct cctttctcaa aaacgctaac
     2941 cctgttatcc acagaacccg gggataaacc aggaaagaac atgtgcgcaa aaaacgaaac
     3001 cccgggaaag gccgcgccgg aggcgctttt tccataggct ccgcccccct gacggacttc
     3061 acaaaacaga cactttttcg gtgcatctgt gggagccttg cggctcaacc atgaaatccg
     3121 ccagcggtgg cgaaacccga cgtggcttaa agatcatcac cgtttccggt gaatcgctcc
     3181 ctcctgcgcc cccacgttcc cgccatatcg attaccggat accttttccg cctttctccc
     3241 ttacgggaca cgtggcgctt tctcatagct cacgtcttct ggtatctcgg ggcgacttag
     3301 gcagttcgct ccgggctggg ctgtatgcag gaaccccccg ttcagcccga ctgctgcgcc
     3361 ttctccggta actgttctct tgggtccaac ccggaaaaga caccacaaag cgccactggc
     3421 agcagccatt ggtaaaagtc atgtgcgaga tatttagaga gtacttgaag tggctgccgg
     3481 agtgcggcta cactagaaga acaattttgg tgactcgtct cgcataagac agttacctgg
     3541 ttaagcagtc tgcaagctga cttaaccttc gatcaaaccg ccctgcaagg cggttttttc
     3601 gtttacaggc agcagattac gcgcagaaaa aaaggatctc aagaggatcc tttgatcttt
     3661 ttgttacaaa cgtctctatt tgactcccct gagagcgttt tagcgcgcct ctgaccccct
     3721 tggttacatt ccgacaccag aaacgctccc gttttttacg tgcatttggc acggtatcga
     3781 tggaggccgg ggggcaatcc tgaacagaat gttactcctc tgagtatttt ctgttaagaa
     3841 aatatacact tagcacagtt acaataaatc ctaccccctg taagaatgtg aattgttcat
     3901 ccaaaaacaa ccatgacaaa aataatgcaa ctagcggaat aaagtacaac attatccctg
     3961 ccaaatgaac tgggagccaa cgcaaggagt tcaagtaaaa acaaaaagct aaaaaatatt
     4021 gtaatattcc agatgaaaaa acaataatca cggattccaa cggaagataa attgatgatt
     4081 tagatataaa aataaagagc gatgacagta taagggagaa tgtcaactgt ccgctcaata
     4141 atgtgatagg ctcaaacgat ttaataaggc gagacgatat aacaacataa aatgctgccg
     4201 ataacacacc ggcaacaaca agacaatatc caacaatatt attcgatcca ttactgatgt
     4261 ctggcaaggc taccaaaata ctgccaacaa ttgcacctat aaggaacaat ataaaatatt
     4321 gcggggaatt aattttaact gagcaaataa gaacagacaa caccaatata aacactgatt
     4381 caagtgaaaa aataattgat gcgcttcctg ctgaaataaa ataaagtccg tagagtgtaa
     4441 aagtatacgc taagaatggt tcaaaaacgc ctgtcgcata agcaagtatc gcttttgagt
     4501 ttaatgggag tttttttctt tttataaaaa gaactatcca agatagtatt actgcactac
     4561 aaatctgcca gaaaaacacc cctccggcat ctagttcttc aactcctttt ttgctcatta
     4621 cgatagctgc cccccatgag aacgctgcta aaaaagcaaa aagcattcct ttaatcatat
     4681 taatcatcct ctttctcata aaggggtttg ttttcaaatt tccttggttg aaaggagtta
     4741 aaaaacatag atgcatcatc tacaggaata ccaataaact ctccataata aggatcatct
     4801 ataggaaact cttctaatga aacataaaac aatacattcc agttgaagat cattggatca
     4861 ctattttcta tttcatggag caatctttca tccttagtta attctcctgg aattaataca
     4921 tcagtatgat aaaaaccgct gtaataagaa ctattaccgg tgtgcactgg gcatccaaaa
     4981 cgatccaaat tagattctga atgccatgtt gtagaaatcc cttccggatg tgaataccca
     5041 cccttaccaa cagactgaat agtcatgtta cgaatatccg ctaacgcttg ttcttgatct
     5101 ttatagaaac ctttttctat cgccagcctc ataaaatgcc ccggggcatt tacagaaata
     5161 agtattcccc ctggtattct tctatcatga tttcttgttc tatgagcaga agagtaaaaa
     5221 acattaacac cagccttata tatttttagc ccatctttat cctgaaatgg tacgctttca
     5281 gtataaataa catcctcttt tattggatag cactctggca tatgcagcga acaaatatat
     5341 ttttgtatgt ccactaactc ttctgatgga cgagcaaagg caagttgtgg atgaataaaa
     5401 taaatgagat gcgcactgac ctctcctctt cttgcgcgtt ctttaaaacg aactctttca
     5461 ttacgcaaaa aatcaaacaa atgaccatca tcattatata gttgggggct atttacaata
     5521 gataaatgga aatcaagccc tttaattttc ttgcttgcca atttaccaaa tacacagggc
     5581 tgattgcctg acacccattt tcttagtaaa tcttcaattt tatctttaga a
//
