LOCUS       NZ_OY757123             5873 bp    DNA     circular CON 05-NOV-2023
DEFINITION  Escherichia coli isolate F1055 plasmid pF1055-3, complete sequence.
ACCESSION   NZ_OY757123
VERSION     NZ_OY757123.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113543011
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/05/2023 18:53:37
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 296
            CDSs (total)                      :: 293
            Genes (coding)                    :: 260
            CDSs (with protein)               :: 260
            Genes (RNA)                       :: 3
            tRNAs                             :: 3
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 33
            CDSs (without protein)            :: 33
            Pseudo Genes (ambiguous residues) :: 0 of 33
            Pseudo Genes (frameshifted)       :: 13 of 33
            Pseudo Genes (incomplete)         :: 30 of 33
            Pseudo Genes (internal stop)      :: 3 of 33
            Pseudo Genes (multiple problems)  :: 12 of 33
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY757123.1.
            Complete plasmid sequences of E. coli strain F1055.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5873
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F1055"
                     /db_xref="taxon:562"
                     /plasmid="pF1055-3"
     gene            join(5815..5873,1..472)
                     /locus_tag="SBO91_RS01445"
                     /old_locus_tag="FGAF1055_50750"
     CDS             join(5815..5873,1..472)
                     /locus_tag="SBO91_RS01445"
                     /old_locus_tag="FGAF1055_50750"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001673158.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            479..712
                     /locus_tag="SBO91_RS01450"
                     /old_locus_tag="FGAF1055_50760"
     CDS             479..712
                     /locus_tag="SBO91_RS01450"
                     /old_locus_tag="FGAF1055_50760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_021520366.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENWR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            797..940
                     /locus_tag="SBO91_RS01455"
                     /old_locus_tag="FGAF1055_50770"
     CDS             797..940
                     /locus_tag="SBO91_RS01455"
                     /old_locus_tag="FGAF1055_50770"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_318039577.1"
                     /translation="MALRWDGNQRQAKMLAARFRCIFWDNGWFGGTGNALQSELAENTG
                     TR"
                     /name="hypothetical protein"
     gene            1432..2484
                     /locus_tag="SBO91_RS01460"
                     /old_locus_tag="FGAF1055_50780"
     CDS             1432..2484
                     /locus_tag="SBO91_RS01460"
                     /old_locus_tag="FGAF1055_50780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021517772.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGNGGYSHPEGISTTWHSESKLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIDNSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGVPVDDASMFFNSFQPRKFE
                     NNPLYEKEDD"
                     /name="hypothetical protein"
     gene            2477..3352
                     /locus_tag="SBO91_RS01465"
                     /old_locus_tag="FGAF1055_50790"
     CDS             2477..3352
                     /locus_tag="SBO91_RS01465"
                     /old_locus_tag="FGAF1055_50790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002430975.1"
                     /GO_function="GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /GO_process="GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="WP_000609294.1"
                     /translation="MINMIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSA
                     VILSWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLES
                     VFILVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLS
                     AAFYVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGIL
                     QYFLAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSV
                     YFLNRKYSEE"
                     /name="DMT family transporter"
     gene            4058..4402
                     /locus_tag="SBO91_RS01470"
     CDS             4058..4402
                     /locus_tag="SBO91_RS01470"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_317731062.1"
                     /translation="MSRKAPTDAPKKCLFCEVRQGGGAYGKSASGAAFSGVSFFAHMFF
                     PGLSPGSVDNRVSVFEKGESARRSRTTERSESVSEEAEERLNWHFLLTHLCGISHPTWR
                     TFHTIRTDAE"
                     /name="hypothetical protein"
     gene            complement(4557..4748)
                     /locus_tag="SBO91_RS01475"
                     /old_locus_tag="FGAF1055_50800"
     CDS             complement(4557..4748)
                     /locus_tag="SBO91_RS01475"
                     /old_locus_tag="FGAF1055_50800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_021539356.1"
                     /translation="MTKQEKTALNMVRFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            4814..5137
                     /locus_tag="SBO91_RS01480"
                     /old_locus_tag="FGAF1055_50810"
     CDS             4814..5137
                     /locus_tag="SBO91_RS01480"
                     /old_locus_tag="FGAF1055_50810"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024188420.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAAWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALIAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          4382..4463
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.795"
                     /coverage="100.0"
                     /evalue="6.23e-34"
     Typing          3738..3925
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          2..816
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.529"
                     /coverage="100.0"
                     /evalue="2.47e-152"
     Typing          5128..5873
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.795"
                     /coverage="100.0"
                     /evalue="7.530000000000001e-161"
ORIGIN
        1 atctacagag aaaatgctga acgacgagtt caggaagctc gaagaatctg taaacaggga
       61 actgacctca aacgaatctt taatcaggaa cgctatcaac gaccatacaa cagccctgaa
      121 agaactgctg gagaggtatc agaaaacgac cgtcgatacg atggacgcgc actggaaaac
      181 cgtactgaaa atgagcgtga aacgctggct gtggctgatt atcgtctcag tactgatgtt
      241 tgccacgacc gggagtctgc tgtggtacca gggcatgaag ataaacgcga atatgaatat
      301 tctccgcgag cagaaagaga gtctggagaa gctgaacgcg aagacatggg gcgtgcgtta
      361 tcacgaggac agcaacggac gttttctggt gttgccgaag gggatgaaag ccgaaacgaa
      421 ctggacgaag gacaacggca aactgaacgc agtgagactg gtgcaggagt gacagagcat
      481 gacggagctg gaaagacatt tgctgaacgc attagagcaa ctgcaacagg actatatgca
      541 gcggctgaac gaatgggaga acgccttcgt ggaattgcag aaaatgtttt cgcttacgca
      601 acgggacaac gcgatgctga acgggcgagt catgcagttg agtcagcagg tgcagcactt
      661 gagcgagcgg acagaacgct tgagccagtt atacagcgag aactggagat aagggatgag
      721 cggctgatac aggagcgcga atatgcgtta tccctggagc gggagcgcca gccggaaatt
      781 caggaacgga cactggatgg cccttcgctg ggatggtaac cagagacagg ctaaaatgtt
      841 ggcagcgcgt ttccggtgca ttttttggga taatggttgg ttcgggggca ccgggaacgc
      901 gcttcagtca gagcttgctg aaaacacagg aacgcgttaa aacgcatgcg ggcgcgattc
      961 tggtgtgtct ttgttgctgt gttttgccgt tattgccaga tcgcgctcat tcccatgaat
     1021 ttctgttttt ccgctccggt tccgtcttct gcctttccga aagtatgaaa aaaatccgtt
     1081 tcagcagtct ctggctggca attcctgcgt gattcacatg gctgcatagc tatgcatgtg
     1141 gttaaaattt atcgggtgcg atcgcggcag tttttcgggt ggtttgttgc catttttacc
     1201 tgtctgctgc cgtgatcgca ccgaacgcgt tttggcggtg cgtacaatgc gacgttatgg
     1261 taaatggagc ggattttcag gaaggagtga tactaacaac tcgaacactg tgcaaataat
     1321 gattttttaa aatatcggta acgataataa attatttcgt tttacgtcgg taataaatat
     1381 aatgtagttt cagtatataa aaaatatatg aggtgtcttg tgggagcttt catgaatctt
     1441 caacaacgta taaataaact accacaatta tcatccagtt tttcatttgg aaaagatatt
     1501 gataatattc attcatttat ctttaacgaa acttctaaag ataaaattga agatttacta
     1561 agaaaatggg tgtcaggcaa tcagccctgt gtatttggta aattggcaag caagaaaatt
     1621 aaagggcttg atttccattt atctattgta aatagccccc aactatataa tgatgatggt
     1681 catttgtttg attttttgcg taatgaaaga gttcgtttta aagaacgcgc aagaagagga
     1741 gaggtcagtg cgcatctcat ttattttatt catccacaac ttgcatttgc tcgtccatca
     1801 gaagagttag tggacataca aaaatatatt tgttcgctgc atatgccaga gtgctatcca
     1861 ataaaagagg atgttattta tactgaaagc gtaccatttc aggataaaga tgggctaaaa
     1921 atatataagg ctggtgttaa tgttttttac tcttctgctc atagaacaag aaatcatgat
     1981 agaagaatac cggggggaat acttatttct gtaaatgccc cggggcattt tatgaggctg
     2041 gcgatagaaa aaggtttcta taaagatcaa gaacaagcgt tagcggatat tcgtaacatg
     2101 actattcagt ctgttggtaa cggtgggtat tcacatccgg aagggatttc tacaacatgg
     2161 cattcagaat ctaaattgga tcgttttgga tgcccagtgc acaccggtaa tagttcttat
     2221 tacagcggtt tttatcatac tgatgtatta attccaggag aattaactaa ggatgaaaga
     2281 ttgctccatg aaatagataa tagtgatcca atgatcttca actggaatgt attgttttat
     2341 gtttcattag aagagtttcc tatagatgat ccttattatg gagagtttat tggtgttcct
     2401 gtagatgatg catctatgtt ttttaactcc tttcaaccaa ggaaatttga aaacaacccc
     2461 ctttatgaga aagaggatga ttaatatgat taaaggaatg ctttttgctt ttttagcagc
     2521 gttctcatgg ggggcagcta tcgtaatgag caaaaaagga gttgaagaac tagatgccgg
     2581 aggggtgttt ttctggcaga tttgtagtgc agtaatacta tcttggatag ttctttttat
     2641 aaaaagaaaa aaactcccat taaactcaaa agcgatactt gcttatgcga caggcgtttt
     2701 tgaaccattc ttagcgtata cttttacact ctacggactt tattttattt cagcaggaag
     2761 cgcatcaatt attttttcac ttgaatcagt gtttatattg gtgttgtctg ttcttatttg
     2821 ctcagttaaa attaattccc cgcaatattt tatattgttc cttataggtg caattgttgg
     2881 cagtattttg gtagccttgc cagacatcag taatggatcg aataatattg ttggatattg
     2941 tcttgttgtt gccggtgtgt tatcggcagc attttatgtt gttatatcgt ctcgccttat
     3001 taaatcgttt gagcctatca cattattgag cggacagttg acattctccc ttatactgtc
     3061 atcgctcttt atttttatat ctaaatcctc aatttatctt ccgttggaat ccgtgattat
     3121 tgttttttca tctggaatat tacaatattt tttagctttt tgtttttact tgaactcctt
     3181 gcgttggctc ccagttcatt tggcagggat aatgttgtac tttattccgc tagttgcatt
     3241 atttttgtca tggttgtttt tggatgaaca attcacattc ttacaggggg taggatttat
     3301 tgtaactgtg ctaagtgtat attttcttaa cagaaaatac tcagaggagt aacattctgt
     3361 tcaggattgc cccccccggc ctccatcgat accgtgccaa atgcacgtaa aaaacgggag
     3421 cgtttctggt gtcggaatgt aaccaagggg ggcagaggcg cgctaaaacg ctctcagggg
     3481 agtcaaatag agacgtttgt aacaaaaaga tcaaaggatc ctcttgagat cctttttttc
     3541 tgcgcgtaat ctgctgcctg taaacgaaaa aaccgccttg cagggcggtt tgatcgaagg
     3601 ttaagtcagc ttgcagactg cttaaccagg taactgtctt atgcgagacg agtcaccaaa
     3661 attgttcttc tagtgtagcc gcactccggc agccacttca agtactctct aaatatctcg
     3721 cacatgactt ttaccaatgg ctgctgccag tggcgctttg tggtgtcttt tccgggttgg
     3781 acccaagaga acagttaccg gagaaggcgc agcagtcggg ctgaacgggg ggttcctgca
     3841 tacagcccag cccggagcga actgcctaag tcgccccgag ataccagaag acgtgagcta
     3901 tgagaaagcg ccacgtgtcc cgtaagggag aaaggcggaa aaggtatccg gtaatcgata
     3961 tggcgggaac gtgggggcgc aggagggagc gattcaccgg aaacggtgat gatctttaag
     4021 ccacgtcggg tttcgccacc gctggcggat ttcatggttg agccgcaagg ctcccacaga
     4081 tgcaccgaaa aagtgtctgt tttgtgaagt ccgtcagggg ggcggagcct atggaaaaag
     4141 cgcctccggc gcggcctttt ccggggtttc gttttttgcg cacatgttct ttcctggttt
     4201 atccccgggt tctgtggata acagggttag cgtttttgag aaaggagagt ccgctcgccg
     4261 cagccgaacg accgagcgta gcgagtcagt gagcgaggaa gcggaagagc gcctgaactg
     4321 gcattttctc cttacgcatc tgtgcggcat ttcacacccg acatggcgca cttttcatac
     4381 aatccgcact gatgccgaat gattaagcca gtatacactc cgctatcgct acgtgactgg
     4441 gtcagggctt cgccccgaca ccccaaaggt caacggcctg acgcgccctg gcgggcttgt
     4501 ctgctcccgg catccgctca cagacaagct gtgaccgtct ccgggagctg catgtgtcag
     4561 cggttttcac cgtcatcccc gaagcgtgcg aggcaactgc ggtaaagctc atcggcgtgg
     4621 tcgtgaagcg attcacagat gtctgcctgt tcatccgcgt ccagttcgtt gagcttctcc
     4681 agcagcgtta atgtctggct tctgataaag cggaccatgt taagggcggt tttttcctgt
     4741 ttagtcactg gatgcctccg tgtaaggggg atttctgttc atgggggtaa tgataccgat
     4801 gaaacgcgag aggatgctca cgatacgggt gactgatgat gagcatgccc gtttactgga
     4861 acgctgtgag ggtaaacaac tggcggcatg gatgcggcgg gtctgcctgg gtgagcctgt
     4921 tgcccgttcc gggaagctgc cgacactggc accgccgtta ctgcgtcagc tggccgctat
     4981 cgggaataac cttaaccaga cagcgaggaa ggtgaacagc gggcagtggt cttccggtga
     5041 ccgggttcag gtggtggccg cactgatagc catcggggat gagctgcgcc ggctgcgtct
     5101 ggcggtcagg gaacaggggg cgcgggatga tagttaagtt tcatgccagg ggaaaaggtg
     5161 gtggcagtgg tccggttgat tacctgctgg gaagggagcg taaccgggaa ggggcaacgg
     5221 tgcttcaggg gaatccggaa gaggtccggg aactcatcga tgccacgcca tttgcgaaga
     5281 aatacacgtc aggtgttctg tcgttcgcgg agaaggagct gccgcctgga gggcgtgaaa
     5341 aagtgatggc gagctttgag cgtgtactga tgcccggtct cgagaaaaat cagtacagca
     5401 tcctgtgggt ggagcaccag gacaagggac ggcttgagct gaattttgtc attccgaaca
     5461 tggagctaca gaccggaaaa cgcctccagc cgtactacga ccgggcagac aggccgagaa
     5521 ttgatgcctg gcagacgctg gtgaatcacc attacggtct gcatgacccc aacgccccgg
     5581 agaaccgccg gacgctgacc cttcctgata acctgccgga aacgaaacag gcgcttgctg
     5641 agggcgtcac acgcgggata gacgcgcttt accatgccgg agagataaaa ggccgtcagg
     5701 atgtgattca ggcgctcaca gaggcggggc ttgaagtggt cagggtgacg cgaagcagta
     5761 tcagcattgc agacccgaac ggcgggagga atatcagact gaaaggagcg ttttatgagc
     5821 aatcttttac agacgggcgc ggagttcgag aaaaagctga aagagagagc cga
//
