LOCUS       NZ_OY757120             7307 bp    DNA     circular CON 05-NOV-2023
DEFINITION  Escherichia coli isolate F873 plasmid pF873-2, complete sequence.
ACCESSION   NZ_OY757120
VERSION     NZ_OY757120.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542923
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/05/2023 19:00:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 152
            CDSs (total)                      :: 152
            Genes (coding)                    :: 118
            CDSs (with protein)               :: 118
            Genes (RNA)                       :: 0
            tRNAs                             :: 0
            ncRNAs                            :: 0
            Pseudo Genes (total)              :: 34
            CDSs (without protein)            :: 34
            Pseudo Genes (ambiguous residues) :: 0 of 34
            Pseudo Genes (frameshifted)       :: 15 of 34
            Pseudo Genes (incomplete)         :: 27 of 34
            Pseudo Genes (internal stop)      :: 7 of 34
            Pseudo Genes (multiple problems)  :: 12 of 34
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY757120.1.
            Complete plasmid sequences of E. coli strain F873.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..7307
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F873"
                     /db_xref="taxon:562"
                     /plasmid="pF873-2"
     gene            complement(join(6672..7307,1..3598))
                     /locus_tag="SBO95_RS00735"
                     /old_locus_tag="FGAF873_46810"
                     /pseudo=""
     CDS             complement(join(6672..7307,1..3598))
                     /locus_tag="SBO95_RS00735"
                     /old_locus_tag="FGAF873_46810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_310088.2"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="RHS element core protein"
                     /name="RHS element core protein"
     gene            complement(3679..3873)
                     /locus_tag="SBO95_RS00740"
     CDS             complement(3679..3873)
                     /locus_tag="SBO95_RS00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001351461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3969 family protein"
                     /protein_id="WP_000990552.1"
                     /translation="MNAASHSKNLIDIIDSGCELEDISSIIPENLSGNIDKLINQTLDF
                     IRGAPDFGGAVDKEIILVK"
                     /name="DUF3969 family protein"
     gene            complement(4139..4591)
                     /locus_tag="SBO95_RS00745"
                     /old_locus_tag="FGAF873_46830"
     CDS             complement(4139..4591)
                     /locus_tag="SBO95_RS00745"
                     /old_locus_tag="FGAF873_46830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016247180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000960005.1"
                     /translation="MLVGAAVGAVVIGGGIVIYNNREAVGDAIEKSMEMRGEAELLNAQ
                     SQMEFWRDPYGAFSSVFGNDDSSKENPNVGKDLTDEEKNCLGSGSTGGSGGWEPDEDGE
                     IRNTYRSIKDAPQYPRGFRNVQNGTTRNVVKDQQLLKQLRKVDSGK"
                     /name="hypothetical protein"
     gene            complement(4621..5757)
                     /locus_tag="SBO95_RS00750"
                     /old_locus_tag="FGAF873_46840"
                     /pseudo=""
     CDS             complement(4621..5757)
                     /locus_tag="SBO95_RS00750"
                     /old_locus_tag="FGAF873_46840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000420980.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1-like element ISEc1 family transposase"
                     /name="ISAs1-like element ISEc1 family transposase"
     gene            <6124..6243
                     /locus_tag="SBO95_RS00755"
                     /pseudo=""
     CDS             <6124..6243
                     /locus_tag="SBO95_RS00755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012477181.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0004803 - transposase activity [Evidence IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="IS1 family transposase"
                     /name="IS1 family transposase"
     gene            complement(6265..6660)
                     /locus_tag="SBO95_RS00760"
                     /old_locus_tag="FGAF873_46860"
     CDS             complement(6265..6660)
                     /locus_tag="SBO95_RS00760"
                     /old_locus_tag="FGAF873_46860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000759875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS element protein dsORF-e4"
                     /protein_id="WP_000759875.1"
                     /translation="MKKYIFLVLFLLCGCSPVDIEPARQEVNIFRGLYQTGKYSDIYKI
                     TSSDFQTATSEKKFIDIMNEAKEKDLGTYKKSTLKTEKITRGLFSNDEITLIYFSEYSK
                     RIVQEVFVFNVEDKKVKLKGYRYDSIN"
                     /name="RHS element protein dsORF-e4"
ORIGIN
        1 tctcttcatt aagctggttg ccccattcat catactcccc gcgccacgcc gtattgccgt
       61 cttcgctgat gagcgccagc ggcaggcccc ggtggtcgca gtggtaaaaa tgaacttttc
      121 gcgccggtgt gtattccggc tccacctgtc tggccagttg ctccaccgtc agcccgcact
      181 gcgcaagcca cgcccggctt tcactgctca cgcggtctgc ccggatttct tcctccagcc
      241 tgtccagcag ccgcaccagt tcagccggaa ataccacgcc gtgcccgtcc tcgctccctt
      301 cctgctgcag cttctccgcc aggctgcggc gctgcgcttt ctcccgctcg ccgttgtctg
      361 tttcgatgcg gatgagcggc gcgaagctcc ccggctgata taccgtctgg atacgcgtgg
      421 tgtcggtctg taccgtcgtc agccggtcgc cgtcccaccc gtaccacgtc atctccggtt
      481 tacgcgacag cgacatccac cccgtcaggt cacgctcccg ccgccatacc cgtttcgcca
      541 ttcgccgtcc cagcgggtcg tagaggtagc ggctctcgac cagtggctcg ccatgctgta
      601 tccgcgtgtg gaacaccagg cggtgctggc tgtcgtagtg gtagtggtgg gtccgctcgt
      661 cgtccgtccg tatcacaccc gtcgggatgc ggtccgtctt ctccgtcagt ctgccgtatt
      721 catcatagtg gtaaacatag tgcgcatcct ctgcgatgcg gttatccggc cacgccgtga
      781 gcgtgctgtc cgggtgtagc tccgggtccg gcaggcggtt tcccgccggg tcggtggcat
      841 acgggatgcg gatgtccagg tccggtgcga gggtgcgcac gctctccagc ctgcccgtgg
      901 cactgtagcc gtattcccgc gtctgtcgcg gaccgctgat gcgcaccagg tcgccgttgt
      961 cattccaccc gtagtcacgg tcatacacca ggctgttcag gtgctggctc tgtaactggc
     1021 ctgcgggggt gtatgtgctg gtcagttcat atgcggcatt actgcctgcc ctgctgccga
     1081 agctgcgcac cgtctcacgg tgcagcctgt cccgcgtata ctcgaccagc ggcgtcccgc
     1141 ccagcttcat gcccgccagg taaccgctgc cgtaggtcag ccactccacc ggcggcaggc
     1201 tgtccggcgt gacgcggttt gccagcccct gttcgttgta ggcgtgtttc gtctcatgct
     1261 gccacagcag ttcccccgtc tccgggttct ccaccgtctg ccgttcgccc gtcaggcggc
     1321 ccttatcgtc gtagccgtag tggaccgaca cgcggtggcc ttcactggta tggctgaggg
     1381 tggttaacca cccgtgctca tcatactgcc actgctctgc cgggtcgccg ttcaccgtcc
     1441 ggtgcgtgat gcggtccgac gcatcgtagt gccagagggt gataagcccc tcgtcttcac
     1501 tctgcgtgag ttttccggtc aggtcatagt ggtaacgttg cgtccggccg tcaaagccgc
     1561 gctgctccgt cagcctgtcg accgggtcat accggaacgt ggactggctg ccgttctcgt
     1621 tggtcagcac agtgatgcgc ccggcagcgt cataccccat gctgcgcgtc agaccgcctt
     1681 ccgtcacact caccggacgc ccgcgtttat catattcgat ggtgctgcgt ttaccgtccg
     1741 gtgataccgt tgctgtcagg tcgcctgcgg cgctgtactc ataacggatt tcacgcccct
     1801 gcgcatcctt ctgactgacc agttgcccac gcgggttata actgctgtaa gtgctgatgc
     1861 cttcctcccg gtgaacggcg atttgttgac cgtaccggtc gtactcatac cgcgtcgtgt
     1921 accccgagca gtccgtaaag gccagcagtt gaccgtaacg gctccatgcc atctgttttg
     1981 tactgcccgt cgcgtcctgt atccctgtcg gcagctcact agccgggtca tcatagctgt
     2041 aactcgtcgt ctcaccgctg cgtgaggtct ccgccgccag ccttcccttc tcatcatact
     2101 cccggctgct gcgaagcccg tccgggtacg tcaccgacgt cacctgccgc tggctgttat
     2161 agccataccg taccgtcctg ccatccggca gtatcactga agtcagcttt ccagacgcca
     2221 tatgcagtcg gtactccgtc cgccgtcccg ccgcatccgt ctgcgccttc agcctccccg
     2281 cctcatcata ctcgctgcgg gtgatgctgc cgtccgcatg ctccttcttc accacacgct
     2341 tcaggccgcc ttcgccctcc gtgtacagca cctcccgccg gttcaggctg tccgtgatgg
     2401 tcacacggtc ctgcccgtac tcaaagcgat agtccagccc ctccgggttg acctgctccg
     2461 tcacccgccc ggtatcatca taccggtagc ggctctccgg tctccctgca taatggtgcg
     2521 ccaccatccg cccggcgtgc tccgcatcat aagtaaaccc gcgcacctgc gttccgctgc
     2581 ggtcatacac cgcccgcagt tcaccaccgg ccgtgtacgt gtagcgcgcc agcggcgcag
     2641 tcggcagttc atccgggtat gccgggtcgt gtgtcagcca caccgcctcc agccggatac
     2701 cgttatcgac accgtactct gtaccggcgg gcagcgtgtc ggggaaaacc tgagaagagg
     2761 aaacagaacg gggactggcc ggggaagata aagacgtggc gcgctgttta cggaaggctt
     2821 ccgcccgctg cgcctgcgtg gtcagcgcca ggtgaaaacg gcggcccgcg ccgtccgtca
     2881 cccccgtcac cgcgcccgcc acgtcaccct tagctgcccg gtggaaagtc agcgtccgcc
     2941 cgaagccgtc caccaccccc gtcagcaccc ggtatgcggg cggcggaggc ggcagcacct
     3001 cgtccgcccc cggcacccgc tccggccagc tgagtatcca ccacggcccc tgaaggctgt
     3061 ttgtcgccag gtacacatgc ggactcaggc gaacatcttc cggcagcacc tgccagagcg
     3121 cgcttagcgg ctgcgaactg tgctgctccg ccaccccgcc ccgcgccagc cagaacgact
     3181 cgctgcggct gtagcttacc tcgccgggaa acagcggctc aaagtgaatg ctcctgccgc
     3241 cgctgtcgtt gagtatcagt tcccgctcat gaacctgtaa gcggatatcg aagggtgctt
     3301 tccagccggg accgaacacc cccaccggcg cgggcgtcct ggtccggtaa ctgctgtagg
     3361 cgcgggaaag aataaacggc aacgggccgg gcagcgcaag gtccgtctcg cccggcagca
     3421 cctttgctcc cagcagcggg ttcaccgggt tacccttctg ctcctctatc gggctgttgg
     3481 gacataccga acaggccact cccgtcggcg cgcctatcag cacccctgct gaaccctgca
     3541 caatatccag tcccttgcgg gtcatgtcac cctgccgcgc tgccggtttt ccgctcattc
     3601 tcactccctt atatttatac cactaacaat aaaaaagccc tcaacaaaac atcaccaaca
     3661 tatattaacg atatattttt atttaactaa aataatttcc ttatcgactg caccgccaaa
     3721 atcaggagca cctcgaataa aatccagcgt ctggttaatt aatttatcaa tattacctga
     3781 taaattttca ggaatgatgc tagatatatc ttcaagctca caaccagaat ctataatgtc
     3841 aattaagttt ttagagtgcg atgcagcatt caatgttttt gacgtagatg gcttaaatat
     3901 aaaaccttct gcctcatcta tagatattgc tttttttcaa tagaatataa aacacccaac
     3961 actaaaagac tgataaattt ctctgcgtgt tcattgctaa tactataatc aattctcatt
     4021 ataaattact ccaataaggt tttactttta cattaaatac tcgaccactc tgactttcaa
     4081 aatagtgaat ggacactttt cgacctgacg catcaaatcc atctttataa actttactct
     4141 attttcctga atctacttta cgtaattgtt tcaataactg ctgatccttt acaacattcc
     4201 ttgtagtgcc attttggaca ttcctaaacc ctctgggata ctgaggagca tccttaatag
     4261 acctgtaggt atttcttatt tcgccatcct catctggctc ccaccctccc gaacctcctg
     4321 tactgccact gcccaaacag ttcttctctt catccgtcaa atccttcccg acatttggat
     4381 tctcttttga tgaatcatca tttccaaaca cgctggaaaa agcaccatag ggatctcgcc
     4441 agaattccat ttgactttgt gcatttaata attcggcttc accccgcatc tccatacttt
     4501 tctcaatcgc atccccaaca gcctcgcgat tgttgtatat tactatacca ccaccaataa
     4561 ccaccgctcc aactgccgca ccgactaaca tccctggagg gcctcctacc cagggcaaga
     4621 ttacgaaagc ccgctccccg caaggactga cgccagatag ttcctgtcca tggctgcttt
     4681 tcgcatctta cgtcttaacc ctgccttgaa taccttatca ttcgtcaaaa tattaatagc
     4741 aatgtgccgt atccctgaaa ataattctgc tgcatttcct cttcttattt tgcagtcgtc
     4801 ttcattcatt accacgtcca gacgccagtg cagcttattc tccacgtgcc agtggtttcg
     4861 gattgctgtg gcgaacttct ctgcggttaa atcagcagaa ctgatataat atctgaccgt
     4921 catttctggc tccttctttt gttctgctat tatggaccga aaggagactg ccacgcataa
     4981 tttcttcagc cctttccatt caaacgtgaa atcaataagt tcatcaggga catcgcaaac
     5041 aatatgaaga cggatttctt ctctgccgtg actcttttca ctcattgcgt aactgtcatg
     5101 ctctggatta tttaattctt tcagcggaaa tttttcctca aaggctttat ttagccgccc
     5161 ctggtttcct tttaccgcga ataaataatc acctccctgt ttttgtatct tctctgcaat
     5221 atctttctgg caacccatcg catcagttgt gatgattttt cctttaatat ccagcatgtt
     5281 aagaagttct gggatagctg taatctcatt agatttctca tccgtcttga tctgtccgat
     5341 gaccagactg tgcattgttg agaacgcact aatgacatga atcgctcccc tgcggcgact
     5401 cttgtcataa gagtgccgga gcgtttttcc atcaattgca atgacgtctt tatcatctga
     5461 agaatggcag tcacgcatcc agttaataaa gcactcgtga aattttgcag gactgataca
     5521 ggatacaact ctggcaatga tatcgtgaac aggaatacca ttttcaaaat caccatatca
     5581 cttcaaaaca tcgggatgtg tttccccaaa atcctctata tcttcccagc cttctgcacc
     5641 agaaataacg gcacaaatag tcaacagtag aatatccgat aatttatgtt ccactttcca
     5701 ggcttgtctg taatcgggga taatagaaat atgttccatc aattttttaa gttccatttt
     5761 gttttcctta attatgtaag gagtatttga tcatgtataa gcaataaaaa acagcttcag
     5821 gtaatgagga atatctcaat ttttaaacat aaaatgcgaa ttatttagta caaaaagtga
     5881 acttttgatg atctttccct aatctcacat aggatcagat ctcgtctgat cgttccccct
     5941 gcgctcacta ccatggctct ttaccacagc agccggggtt gtttgggacc gacttccgac
     6001 agcagatccc ggtgggcctg ccaccatctc ttcacaagct tatgcttatt acatgcaaaa
     6061 cgtcccgttt tgcatctttg tgcctacggc acaccgatga tctttccctg tgatctttcc
     6121 ctgaatctgc ccctgagaac ctgaatcaaa cgtctgactc gcagaaccat ctgtttctcg
     6181 cgctctgtag aacttcatga aaaagtcatc ggtgctttta tcgaaaaata catgttctac
     6241 taattgaagt catcatcaaa aaatttaatt aatcgaatca tacctataac cttttaattt
     6301 tacttttttg tcttcaacat taaacacaaa aacctcttgg acaattcttt ttgaatattc
     6361 tgagaaatat atcaatgtaa tttcatcgtt tgaaaataat ccgcgagtga ttttttcagt
     6421 tttaagggtt gattttttat aagtcccaag atctttttct tttgcttcgt tcattatgtc
     6481 gataaatttt ttttcagatg tggcagtctg aaaatcactt gaagtgattt tatatatatc
     6541 actgtatttc cctgtctgat ataaaccacg aaagatatta acttcttgtc tagctggctc
     6601 tatgtccact ggagaacaac cacacaataa aaataaaact aaaaatatat attttttcat
     6661 atttcctcct gttaattgac ccagcattct tgccacgttc tacaagccag agtcataact
     6721 gaagcgtcaa cacctgcacc gataccaata gattctgtcg atgattctgg attatcaaca
     6781 tccactacat aagtatacgc aaaatgcccc cccaactccg ccgccaaccg ttacacctac
     6841 tgaattgctg actcccgatg taggtaaaga cttggtctca gaatatgtga tagccgcatt
     6901 tatcccacca ccaattcctg catgtccgca tgctgtagca taaatacaaa tatcagataa
     6961 catttcacct ttctttttag caaacgcaac gccaagtcct gcatgaccac ctaatgatat
     7021 tagatctcca ctgccagtaa tatcaattga tgatgttcca tatgaatcat catgccaaac
     7081 atcatataat aattgatata aattatacaa acccaaagga tccatcctta ttatcggatt
     7141 cagtgggtaa ttatacaggt tccatccccc cgccagccca atggggtctt gtgtaatata
     7201 cctcccctgt agcgggtcat agtaccggtt ccggttatag tacagccctg attcctcatc
     7261 atgctgctgc cccggcagac ggtatggctg gtgcaggtaa tacgggt
//
