LOCUS       NZ_OY754432             2096 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Escherichia coli isolate F200 plasmid pF200-5, complete sequence.
ACCESSION   NZ_OY754432
VERSION     NZ_OY754432.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542875
            Assembly: GCF_963575505.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 10:16:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,005
            CDSs (total)                      :: 4,884
            Genes (coding)                    :: 4,690
            CDSs (with protein)               :: 4,690
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 88 of 194
            Pseudo Genes (incomplete)         :: 126 of 194
            Pseudo Genes (internal stop)      :: 45 of 194
            Pseudo Genes (multiple problems)  :: 57 of 194
            Pseudo Genes (short protein)      :: 2 of 194
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY754432.1.
            Complete genomic sequence of E. coli strain F200.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F200"
                     /db_xref="taxon:562"
                     /plasmid="pF200-5"
     gene            130..1119
                     /locus_tag="R8804_RS25025"
                     /old_locus_tag="FGAF200_47680"
     CDS             130..1119
                     /locus_tag="R8804_RS25025"
                     /old_locus_tag="FGAF200_47680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001362017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_024136759.1"
                     /translation="MKNPDLQNLTDYSPSDAPWDAHRSVSDDVGGIYLLAAEYERYGAR
                     MALCGGLLRFGWSTLKETGETRLRLREAHFCRVRHCPVCQWRRSLMWQARFYQSLPRIV
                     ADYPDARWMFLTLTVRNCAIGELGEMLNRMNAAFQRMKVRKEFRPVQGWIRTTEVTRGS
                     DGSAHPHFHTLMMVPPGMLNGKSYVRHERWVELWRECLRVDYDPNVDVRAVKPRKPKGG
                     ESLACATAELVRGAVAETLKYSTKPADMVADPEWFLELTRQTHKRRFVATGGALKDVLK
                     LDQETDADMVIGDDISEGDDDGSRIAFEWKTEVRKYRRSPTKDKTESG"
                     /name="protein rep"
     Typing          1122..1203
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="90.0"
                     /evalue="3.4000000000000004e-27"
     Typing          complement(846..1037)
                     /name="ColpVC"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="98.964"
                     /coverage="100.0"
                     /evalue="6.14e-93"
ORIGIN
        1 gcaacgaggg caatcgttcg ggggtgtgac cacctgtagg aattcgaatt ggtgatacga
       61 ctaacacaac aggtgatatg gcaatgataa cacgtcagat gagccatcgc ccactatcgg
      121 gtggtgcgca tgaaaaaccc tgatctccag aacctcacgg actattcccc ctcagatgcg
      181 ccctgggacg ctcacagaag cgtttctgat gacgtgggag ggatttacct gcttgcagcc
      241 gaatatgagc gctacggggc gcgtatggcc ctctgtggtg gtttactgcg tttcgggtgg
      301 tctaccctca aggaaaccgg agaaacgcgt ctgaggctgc gtgaggcgca tttctgccgt
      361 gtccggcatt gtcctgtctg ccagtggagg cgctccctga tgtggcaagc ccgtttctac
      421 cagtccctgc cgcgtatcgt ggcggattat cccgatgccc gctggatgtt cctgactctg
      481 accgtgcgca actgtgcgat cggggagctg ggcgagatgc tgaaccggat gaatgcagct
      541 tttcagcgca tgaaggttcg caaggagttc cggcctgtgc agggctggat acgtaccacg
      601 gaagtcaccc gcgggagcga cggcagcgca cacccgcact tccacaccct gatgatggtg
      661 ccgcctggca tgctaaatgg gaaaagttac gtcaggcatg aacgctgggt tgaactctgg
      721 cgggagtgtc tgcgggtcga ttatgacccg aatgttgatg tccgggcagt gaaacctcgt
      781 aagccgaagg gcggcgaatc gctggcctgc gcgaccgccg aactggtgcg cggtgcggtg
      841 gccgaaaccc tgaaatattc cacgaagccg gctgacatgg tggccgatcc tgaatggttc
      901 ctcgaactga cccgccagac gcacaagcgc cgctttgtgg cgaccggcgg cgcactcaaa
      961 gacgtgctga aactcgatca ggaaactgac gccgacatgg tgatcggtga tgatatttcc
     1021 gagggcgacg atgacggttc acgaatcgcg ttcgagtgga aaaccgaggt cagaaagtac
     1081 cgtcgctcac cgacgaaaga taaaactgaa tcaggctagc ggggtgtcgg ggtgcacccc
     1141 tgaccagatg gcaattgtga tagcgtcgcg tgtgacggta ttacaattac acatcctgtc
     1201 ccgaaaattc ccgccgtttc tcggtttttt gagcgtcgca gaccgcacga caaacgaacc
     1261 taaggtgagt ttgtataagt gcgcacttcg tgagattccc tgactgccag tttgtcgatt
     1321 gcgcggaacg gctgcggcac gaaaacggca aaatgattta ctcgccgttt gtgtgggttg
     1381 ttttgtgggg tgtcaatggg gttgtggtct tttttgtggg ttaaagtgtg ggtgattgtg
     1441 tgggctgtgt gttttgagtt gtgggtgatt atgtgggtca ttgtgtgggc tgtatgcacg
     1501 gcattttttt gttctcctaa aacacaggca cgataagcgg cgtacacaaa acggggcgtt
     1561 tcgctccgtc gcttgtgcca aaggggacac ccctttgcaa ccctgtgcgg ttctacgaac
     1621 ctggtcagga ctgcgccccg acaccccgcc aacgcctcac ggaacgcgaa aaaattccgc
     1681 gtaccgttca ccgttccctg attcgtcaaa cagaaaatcg cgggggcccg cgcctccggc
     1741 gtgggttccg attttgtgat tgacgacggc acgggaaaaa cactggggat ggtggttggt
     1801 gtcacgcagt gaggccaacc acctgcaaga cggttttttt tgttgttcac aaaatcgggg
     1861 tgaaagtctg tggatgagat gggtgtaagt gggtggggtt gggtgttttg ggttactgaa
     1921 aatcccgctc aaaattcaag cgaatctcgc gcgcgatcct tgtatttata cttaagggat
     1981 aactctagga ttcaaattcg cctccagccc ttgtgccgca aggcctgaag ggggatttgt
     2041 cggaaaatgg ttttggagtt attctgtcgg gagtggtcgc attaaaagcg accccc
//
