LOCUS       NZ_OY754431             2228 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Escherichia coli isolate F200 plasmid pF200-4, complete sequence.
ACCESSION   NZ_OY754431
VERSION     NZ_OY754431.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542875
            Assembly: GCF_963575505.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 10:16:29
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,005
            CDSs (total)                      :: 4,884
            Genes (coding)                    :: 4,690
            CDSs (with protein)               :: 4,690
            Genes (RNA)                       :: 121
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 89
            ncRNAs                            :: 10
            Pseudo Genes (total)              :: 194
            CDSs (without protein)            :: 194
            Pseudo Genes (ambiguous residues) :: 0 of 194
            Pseudo Genes (frameshifted)       :: 88 of 194
            Pseudo Genes (incomplete)         :: 126 of 194
            Pseudo Genes (internal stop)      :: 45 of 194
            Pseudo Genes (multiple problems)  :: 57 of 194
            Pseudo Genes (short protein)      :: 2 of 194
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY754431.1.
            Complete genomic sequence of E. coli strain F200.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2228
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F200"
                     /db_xref="taxon:562"
                     /plasmid="pF200-4"
     gene            complement(214..1203)
                     /locus_tag="R8804_RS25020"
                     /old_locus_tag="FGAF200_47670"
     CDS             complement(214..1203)
                     /locus_tag="R8804_RS25020"
                     /old_locus_tag="FGAF200_47670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001529700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein rep"
                     /protein_id="WP_317746551.1"
                     /translation="MKNLELRYLADYSPADKPWDEHRSISDDVGGIYLRAAGFERYGER
                     VASCSGILRFGWSTNTETGETRLRLRDARFCRVRHCPICQWRRSLMWQARFYQSLPKIV
                     AEHPDARWLFLTLTVRNCPVTELGDTLTAMNAAFQRLKDRKEFRNVLGWIRTTEVTRDR
                     DGNAHPHFHTLLMVPPSMLSGREYVKHTRWVELWRNCLRVEYDPNVDIRTVKPRKPKDG
                     ESLPCVVADALRGAVAETLKYSTKPADMTADPGWFLELTQQVYKRRFVAAGGALKDVLK
                     LERETNEDLLMVDDPADGQDDGSRLAFSWRVEAKKYRRDRTMDKPEQK"
                     /name="protein rep"
ORIGIN
        1 cgacaccctc gacaccgtgc caaatgcacg ttaaaaaaat cattgcgcgc ttctggcaaa
       61 ccttcgaaat ctgttgccgt gatagccaat gagtcagagg cgcgctaaaa gcgcctctga
      121 cgcaatgaga catcgaattg atggaattgc gttagcgcaa tgaaaaaacg cgcctgagcg
      181 cgttttagag gccttagaat cgattttgag atgttatttc tgttctggct tatccattgt
      241 gcgatcgcgg cgatactttt tagcctccac ccgccatgaa aacgcaagac gagatccgtc
      301 atcctgcccg tctgcaggat cgtcgaccat cagcaaatcc tcgttcgtct cccgttccag
      361 cttcagcacg tctttcagtg ccccacccgc agccacaaac cgccgtttgt agacctgctg
      421 cgtcagttcc aaaaaccagc caggatccgc cgtcatgtcg gcaggcttcg tggaatattt
      481 gagtgtctct gccactgcac cgcgcaacgc atccgccacc acacatggca gcgattcgcc
      541 atccttcggc ttacgtggct ttaccgtcct gatatcgacg ttcgggtcat actccacacg
      601 caggcaattg cgccacagtt caacccagcg ggtatgcttc acgtactcac gaccggacaa
      661 catcgaaggg ggaaccatta acaaggtgtg aaaatgggga tgcgcgttgc catccctgtc
      721 acgagtcact tctgtagttc gtatccagcc cagaacattg cgaaactctt tgcgatcttt
      781 cagacgctgg aaggccgcat tcattgcggt caaggtgtcg ccaagttctg taaccggaca
      841 gttgcggaca gtcagagtca ggaacagcca gcgggcatca ggatgttccg caacgatctt
      901 cggcagggac tgatagaaac gggcttgcca catcagggag cgcctccact ggcaaatcgg
      961 acagtgcctg acccgacaga aacgcgcatc acgtaatcgc aaacgcgttt cgccggtctc
     1021 cgtgtttgtt gaccacccga agcgcagaat accgctacag gaagccacgc gttcgccgta
     1081 acgttcaaat ccggcagctc gcagataaat tccacccaca tcgtcggaaa tactccggtg
     1141 ctcatcccac ggtttgtccg caggggaata atccgccagg taccgaagct caagattttt
     1201 catgcccatc accccattct gggcgatggc tagattgacg tgttatcatt gccatatcac
     1261 ctgttactct catcaagaat ccagtttctg caggtggtca tacccccgaa cgacgcccat
     1321 cgttgcgggg gtcacttttt gaccgcgcag aaccaaaata cactcaaaac catttccgcg
     1381 caaattgccg ttcagcccag ttctgacaag gcctagagcc aaataccaat cccagagtta
     1441 tcccttaagt ataaatacaa ggatcgcgcg cgtgatttgc ttgaattttg agcgggattt
     1501 tcagcaaccc aaaacctccc aaccccaccc acttacaccc atctcatcca cagactttca
     1561 ccccgatttt gtgaacaaca aaaaaccgtc ttgcaggtgg ttggcctcac tgcgtgacac
     1621 caaccaccat ccccagtgtt tttcccgcgc cgtcgtcaat cacaaaatcg gaacccacgc
     1681 cggaggcgcg ggaccccgcg attttctgtt tgacgaattc gggaacggcg agcggtacgc
     1741 ggaatttttt cgcgtgccgt aaggcgttgg cggggtgtcg gggcgcagcc ctgacctggt
     1801 ggagtttgga ttaccgaccg tgtggcggga atacaaacat gtatcttgtc ccgatttttt
     1861 caccagaacg ctggcagagc gtcggcagtt ctgcgccgtt aagccctccg caggagcgca
     1921 cagtttcccg acgaaggaga gaaacgtcta agtgcgcatc cgcacttaac gcgcggatga
     1981 attctggcaa ccggacagca aatcattttg ccgttttcgt cgcgtagccc tgccacgcga
     2041 tcgacaaacc tgcggtcggg gaaacccacg aagtgcgcac ttatacaaac ttcacttcgt
     2101 ttcgtttgtc gtgcggtctg cgacgctcaa aaaaccgaga aacggcggga attttcggga
     2161 caggatgtgt aattgtaata ccgtcgcacg cgacgctatc acaattaccc ctggtcaggg
     2221 ctgcgccc
//
