LOCUS       NZ_OY754419             5429 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Escherichia coli isolate F1267 plasmid pF1267-3, complete sequence.
ACCESSION   NZ_OY754419
VERSION     NZ_OY754419.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113543026
            Assembly: GCF_963575475.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 10:17:41
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,070
            CDSs (total)                      :: 4,955
            Genes (coding)                    :: 4,641
            CDSs (with protein)               :: 4,641
            Genes (RNA)                       :: 115
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 314
            CDSs (without protein)            :: 314
            Pseudo Genes (ambiguous residues) :: 0 of 314
            Pseudo Genes (frameshifted)       :: 88 of 314
            Pseudo Genes (incomplete)         :: 222 of 314
            Pseudo Genes (internal stop)      :: 52 of 314
            Pseudo Genes (multiple problems)  :: 50 of 314
            Pseudo Genes (short protein)      :: 4 of 314
            CRISPR Arrays                     :: 3
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY754419.1.
            Complete genomic sequence of E. coli strain F1267.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5429
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F1267"
                     /db_xref="taxon:562"
                     /plasmid="pF1267-3"
     gene            315..398
                     /locus_tag="R8807_RS25305"
     CDS             315..398
                     /locus_tag="R8807_RS25305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007772075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_071532987.1"
                     /translation="MHEPPVQSDRCAFSGNYRLESNPERHD"
                     /name="replication initiation protein"
     gene            700..1326
                     /locus_tag="R8807_RS25310"
                     /old_locus_tag="FGAF1267_49130"
     CDS             700..1326
                     /locus_tag="R8807_RS25310"
                     /old_locus_tag="FGAF1267_49130"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_223149424.1"
                     /translation="MSPTLNKQASKERCAVEFATRKKSKTQRKKSKALSYRGLCFFCTL
                     VTGKCQWTSKMSKQDYIQLRTLTDQFYADNKGLQEALDGSNDGKVRGYGIVVIDLNGLV
                     FGIPLRSHLNHKFGFVSERSEGVKKGLDYTKALLIKKEEYVSRAYKIPTPEFTHINDNK
                     EKIQEDFNKFVNRYIEANVKKDENILRNYRYSTLKNYHKELGLED"
                     /name="hypothetical protein"
     gene            complement(1355..1918)
                     /locus_tag="R8807_RS25315"
                     /old_locus_tag="FGAF1267_49140"
     CDS             complement(1355..1918)
                     /locus_tag="R8807_RS25315"
                     /old_locus_tag="FGAF1267_49140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015959180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001749520.1"
                     /translation="MHALSILPSVARANLATKFSSHLKVIELFNTMQDSQVVVLSSLIE
                     GHHLTSSGNSVKADFEVTRLPAIIEMLEKKYFFPIRHLNVSVKSVTTGRMTGQTVYFIE
                     PEHIEQLLADPELVFANQERSLFFRSLEKEGKNLGKLIEKKGSVSQAVLSLLHHAYKDK
                     PLSDEMWKEIEDKFTHMLDELSAA"
                     /name="hypothetical protein"
     gene            complement(2176..2586)
                     /locus_tag="R8807_RS25320"
                     /old_locus_tag="FGAF1267_49160"
     CDS             complement(2176..2586)
                     /locus_tag="R8807_RS25320"
                     /old_locus_tag="FGAF1267_49160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000874179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000874179.1"
                     /translation="MAFISLSNLAAKTGRIIQSQCVTATQTKKSTGAVELGFRLSKSAM
                     DETGITIGDRVDILYDKEENQWMIKKISEGGFGVSGQKNKHGGYSSCAVRLTLRPGFPR
                     LSEDEEDNKKLLSDDSFTQLSEGVIVFRLDDE"
                     /name="hypothetical protein"
     gene            complement(3407..3619)
                     /locus_tag="R8807_RS25325"
     CDS             complement(3407..3619)
                     /locus_tag="R8807_RS25325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_000137423.1"
                     /translation="MTELEKQLLTALEQLHQDYSQRLDEWESAFAEWQKMSGLMQRENA
                     ALNERVTRLSQQVANLSRQLQRLSQ"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(3623..4108)
                     /locus_tag="R8807_RS25330"
     CDS             complement(3623..4108)
                     /locus_tag="R8807_RS25330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001749519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001749519.1"
                     /translation="MSSLLALAKDLEKQSKAQQQNTCEMLKAAFSEHEKSVKAELSASA
                     KRISDAISAHEQGMTAAMQSNRLSVLRMVGRTWLTITLVSVLLIATSGSILWWQGQQIT
                     GNYQTIRAQERTQAMLSEKNHGVQLSLCGEQKLSCVKVNPKAGAYGEEGNWMVLERK"
                     /name="MbeB family mobilization protein"
     gene            complement(<4143..4823)
                     /locus_tag="R8807_RS25335"
                     /pseudo=""
     CDS             complement(<4143..4823)
                     /locus_tag="R8807_RS25335"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(4786..5106)
                     /locus_tag="R8807_RS25340"
                     /old_locus_tag="FGAF1267_49190"
     CDS             complement(4786..5106)
                     /locus_tag="R8807_RS25340"
                     /old_locus_tag="FGAF1267_49190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_000957082.1"
                     /translation="MLTMWVTEDEHRRLLERCDGKQLAAWMRQTCLDEKPARAGRLPSI
                     SPALLRQLAGMGNNLNQIARKVNTGGAGHDRVQIVAALMAIDAGLERLRHAVLEKGGND
                     DR"
                     /name="MobC family plasmid mobilization relaxosome protein"
     Typing          complement(5215..5394)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="86.339"
                     /coverage="83.0"
                     /evalue="7.539999999999999e-48"
     Typing          2..424
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.118"
                     /coverage="82.0"
                     /evalue="0.0"
     Typing          complement(3292..4796)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="93.426"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggcgttacct gcacacggat aagagcaaag gcatacggca tgacaaacag ggcaagaaaa
       61 ggatgcggcg ctgccgtttt tccataggct ccgcccccct gacaagcatc acgaaatctg
      121 acgctcaaat cagtggtggc gaaacccgac aggactataa agataccagg cgtttccccc
      181 tggtggctcc ctcgtgcgct ctcctgttcc tgcctttcgg tttaccggtg tcattccgct
      241 gttatggccg cgtttatctc attccacgcc tgacactcag ttccgggtag gcagttcgct
      301 ccaagctgga ctgtatgcac gaaccccccg ttcagtccga ccgctgcgcc ttttccggta
      361 actatcgact tgagtccaac ccggaaagac acgactaatc gccattggca acggccactg
      421 gtaaacatga tgtgcgagag atgtattgag agttcttgaa gtggtggcct tactgaggct
      481 acactggaag gacggatttg gtgacacgtc tcgcacaaga ctgttaccac ggttagataa
      541 tctgccagga ttaaataacc ttcgaaaaac cacctgccag ggtggttttt tcgtttcagg
      601 agaagattac gctggcaaag taagtccagt caagaacagc tacgaaattg acttcacata
      661 taatttttga tataagtaaa tctagaagtg gcggtaggaa tgagccccac gttaaacaaa
      721 caagcttcca aagaaagatg tgcggtagag ttcgccacac gtaaaaaatc caagactcaa
      781 cgaaagaaaa gcaaagccct ctcttacaga gggctttgct ttttttgtac attggttaca
      841 ggaaaatgcc aatggacatc aaaaatgagc aaacaggatt acatacagtt aagaaccctt
      901 acagaccagt tttatgctga taacaaaggc ctacaagagg ctctcgacgg cagtaatgat
      961 ggaaaagtaa gaggctacgg aatcgtagtt attgatctca acggattggt gttcgggata
     1021 cccttacgaa gccatttaaa ccataaattt ggattcgttt cggagcgatc agaaggtgtt
     1081 aagaaaggac tggattacac caaagcgttg ctaattaaga aagaagagta tgtatcgcga
     1141 gcctataaga taccaactcc tgaatttacc catatcaatg ataacaaaga aaaaatacaa
     1201 gaagatttca acaaattcgt aaacagatac atagaagcga acgtcaagaa agatgaaaac
     1261 atactcagaa actatcgtta ctctacgctg aaaaactatc acaaagaatt aggtttagaa
     1321 gactaaaaag gcggtctaac gaccgccctt gcctttacgc cgcgctcaat tcatccagca
     1381 tatgggtgaa cttatcttct atctccttcc acatctcgtc agaaagaggt ttatctttgt
     1441 aggcgtgatg tagaaggctt aagacggctt gagaaacact accttttttc tcgataagct
     1501 tgccgagatt tttcccttct ttttcgagag aacgaaagaa gaggctcctt tcctgattag
     1561 caaacacaag ctcaggatca gcgagaagtt gctcgatgtg ttcaggctct atgaaataga
     1621 cagtttgtcc agtcatcctt cctgtagtta cagatttaac agatacattt agatgacgaa
     1681 tagggaaaaa atattttttc tctaacatct cgataatcgc cggtaagcga gtgacctcaa
     1741 agtcggcttt gacactgtta ccagaactgg tgaggtgatg gccttcgatc agtgatgaca
     1801 agacaacaac ttgggaatcc tgcatcgtgt tgaagagctc gatcaccttc aaatgagacg
     1861 agaatttagt tgccaggtta gcgcgggcaa ctgaaggtag tattgataaa gcgtgcatat
     1921 gtatagcctc atatgttttt aaaaacataa acttaagaga ccaaagccaa tagcatcgca
     1981 cctatcagaa tagaaaatgt cgtgttcaca tccctcaaaa gaaacgattt tttctttatt
     2041 agaatgcaag tttatgaaca taatgccgcc cataacactc cacccttcca aaggtagtga
     2101 tgtgttgaca agaaggcgga gttagtcgat tgtttggcga cgctcactaa ctctgccttt
     2161 cctttttggt ccttcctatt catcatccag cctgaagacg attacacctt cacttagctg
     2221 agtgaatgaa tcatcggaaa gtagcttctt gttgtcctct tcatcctcag aaaggcgagg
     2281 aaaacctggt cgcaaggtca atctaacagc acacgatgag taaccgccgt gcttgttttt
     2341 ttgcccagac acaccaaagc caccttcact aattttctta atcatccact ggttttcttc
     2401 tttgtcgtaa agaatgtcga cacgatcccc aatggtaata ccagtctcgt ccatagcgct
     2461 cttgctcaag cggaatccca gctcgacagc gcccgtgctt tttttcgttt gcgtggccgt
     2521 aacacactgc gactggatta tccttccagt cttcgctgcc aagttcgata gagagataaa
     2581 agccataata caatccgttt tagacatcga tcagttctta tacggaagtg tacccaggga
     2641 gcgaggtggc tttcaagatc ttttgtattg atttttctag agccgcaaaa aacggcgata
     2701 agaaacctta aatacaaaaa caattgctcg tattgaacct cgtcaagata cacatccaga
     2761 tcgatcttta tgtaagtaaa gggtattttt ctatggtgat ttaaagtcga gcaacgtcag
     2821 cgcatccaaa aaatcaccaa gtaggtgcaa gaaagccgct tatagaaact gatttttatg
     2881 cctgtatagg ttgccgatga gatgaattta acataagagt tcttgcccgc accgcttcgg
     2941 gctggttcgg cgcaaatacg gtgcctgtcg ggtgaaaccc ctagcaaagc acccggtaaa
     3001 ccgccccgtt tacgccagat aaatttcact tggctgcatg gttatgcagc cagatgaatg
     3061 acagcagttt tcgcgtataa atacggtgta aagcactaaa aaggccactt tcccccgaat
     3121 cgctcccaca gatccattgc cagtttgacg cattgcagta tcagactgag cgcttttagt
     3181 atcttcataa atccccctct cttgagccgt gatcttttca tcacgaccgt atttagcagg
     3241 aaatttatga gcccttcttc ttggggtttg tcactggatg cgcgcagtca gcccagcgtc
     3301 ggaccgttat agctccgctg acggaaacgg ggttctgcca gctctttttc atgctgtcgc
     3361 tgctcgtatg cccgttcggc ggccaccgcc atttcatgcc gctgcactac tggctcaaac
     3421 gctgtaactg cctgctcaag ttcgccacct gctgactcaa gcgcgtgacg cgctcgttca
     3481 gcgccgcgtt ctcccgttgc ataagaccag acatcttctg ccattccgcg aaggcgctct
     3541 cccactcgtc cagcctttgc gagtagtcct gatgtagctg ctctaatgcg gtcagcaact
     3601 gtttttccag ttccgtcatg ggctatttcc tctccagtac catccagttc ccttcctccc
     3661 cgtaagctcc cgctttcggg ttcactttga cgcaggacag tttctgttcc ccacagagcg
     3721 acagctgcac gccgtggttc ttctccgaca gcatggcctg cgtccgctcc tgcgcccgga
     3781 tagtctggta attcccggtg atctgctgcc cctgccacca cagaatgctc ccgctcgtgg
     3841 cgatcagcag tactgagacc agggtgatgg tcagccacgt ccggccaacc atacgcagca
     3901 cgctcagccg gttcgactgc atcgccgcgg tcataccctg ctcgtgggcg ctgatggcgt
     3961 cgctgattct cttcgcgctt gcgctcagtt ccgcttttac agacttctcg tgctcgctga
     4021 atgcggcttt cagcatctcg caggtattct gctgctgcgc tttcgattgc ttttccaagt
     4081 ccttcgccag cgctaaaaga ctgctcataa atggctccct tcagtcggat gtttcgcccc
     4141 ccgtccgggt cggcaatgct gatactgttc tttgtggtgc ggaccacctc aaaacctgcc
     4201 gcagtgagcg accctgtgac gtcctcgcgc gttttgagcg ccccggatga ggctaaggcc
     4261 agcaaacccc gtgtaatcgc ctgagcggct tccagcttcg tttccggcag tgcggacggc
     4321 gtgaccagta accgccggtt cttcggggcg tttggatcat gcagccccag tctgccgttc
     4381 accacggtct gccaggcatc gatgcgcggc cggtcggcgc gatcgtaata cggctgcagg
     4441 cgtttcccgg tcagcagctc tgtgttgggg atcaggaaat tcagctccag ccgccccttg
     4501 tcggtgtgct ccacccacag aatgctgtac tggtctttat cgagcccggg catcagaacc
     4561 cgctcaaagc tggccatgat ctgctcccgc tgcccgggcg gcagctcagc ctccgcgaac
     4621 gacagtacgc cggaggtgta ctttttcgca tacggcgagg catcgataag ctcccggact
     4681 tcctccggct ttccctgcag cacggtcgcc ccctcgcgct gccggtcttt tcccagcagg
     4741 taatccaccg gaccggcacc accaccgcgc ccccggggat ggaatttaac gatcatcatt
     4801 cccccctttt tccagcaccg catgccgcag ccgctccagt cccgcgtcga ttgccatcag
     4861 ggcggccacg atctgcaccc ggtcatgacc ggcaccaccg gtattcactt tccgggcgat
     4921 ctggttcagg ttattaccca taccggcaag ctggcgcagc agcgccggcg atatcgacgg
     4981 cagtctgccg gcacgcgccg gcttctcatc gaggcaggtc tgacgcatcc acgccgccag
     5041 ctgcttgccg tcgcaccgct cgagcagccg ccggtgttcg tcttccgtca cccacatcgt
     5101 gagcatcttg ttgcgtttgt ctgccagagt agcctcctga taacaccggg acgggcggga
     5161 aatgtttccc ggtcggcacg gtgttggaca agccgcaggc gcgtcagtgg cttttagcgg
     5221 gtttcggggc gcagccctga accagtcacg tagcgctagc ggagtgtata ctggcttaat
     5281 atgttacggc ggagtaacac tttataaaag tgcttcatgt ggcaggggaa aatgcagctg
     5341 cagggcgtac gggagaacat ggaggttgcg gtgatattac gcctcctcgc tcactcggtc
     5401 gcttccgctc ctgccgttcg gctgcggcg
//
