LOCUS       NZ_OY754388             1547 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Escherichia coli isolate F138 plasmid pF138-6, complete sequence.
ACCESSION   NZ_OY754388
VERSION     NZ_OY754388.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542932
            Assembly: GCF_963575405.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 10:22:05
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,099
            CDSs (total)                      :: 4,981
            Genes (coding)                    :: 4,739
            CDSs (with protein)               :: 4,739
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 9
            Pseudo Genes (total)              :: 242
            CDSs (without protein)            :: 242
            Pseudo Genes (ambiguous residues) :: 0 of 242
            Pseudo Genes (frameshifted)       :: 72 of 242
            Pseudo Genes (incomplete)         :: 158 of 242
            Pseudo Genes (internal stop)      :: 47 of 242
            Pseudo Genes (multiple problems)  :: 34 of 242
            Pseudo Genes (short protein)      :: 3 of 242
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY754388.1.
            Complete genomic sequence of E. coli strain F138.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F138"
                     /db_xref="taxon:562"
                     /plasmid="pF138-6"
     gene            804..944
                     /locus_tag="R8951_RS25495"
     CDS             804..944
                     /locus_tag="R8951_RS25495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016240737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_042863642.1"
                     /translation="MDCKHEPPVQSDRCALPGNYRLESNPERHDKTPLAAAIGRGCTRD
                     Y"
                     /name="hypothetical protein"
     Typing          571..921
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.591"
                     /coverage="81.0"
                     /evalue="2.93e-164"
ORIGIN
        1 taagtatgac agtaaaaagt ggttatcaac tgcccccgcg ctgcggattg cgcagtttta
       61 gggctttggc cagtgcaggc aggcccggcc ggaatcaggg gatctggtaa cggtgaacgg
      121 gtgcacagtt gactgtgcgg ccgtgaggcg ttggccaagc cgccaggcgc ggcagcttcc
      181 ggtgggtaca aacgccagca ctttgcgaat cctgccctag atctcaacag cagagaaatt
      241 tcgtacgcac gaaactcagc gtatcgggcg gcgcctgatg aaacattctg gagtgtcggc
      301 ggtactccaa aaacacatct tgtcccgctg attttgtcac tggcgcaaag cggcggtaat
      361 gacaagacat ttcctgtccg catcaatacg tgcagaaaac gtaagtggtg aaagatgata
      421 gtacggagcg acaggagcct aagcagccac cggagaaatt acgcttcctc ggtcattcgc
      481 tcactgcgtt cggtcatgac tctgcggcga gcgttacggg atcaatcaaa gggcgtggag
      541 gtatgaagtg tgagaagaga cttaagggct gccggttttc cataggctcc gcccccctga
      601 caagcatcac gaaatctgac gctcaaatca gcggtggcga aacccgacag gactataaag
      661 atcccaggcg tttccccctg gtagctccct cgtgcgctct cctgttcctg cctttcggtt
      721 taccggtgtc attccgctgt tatggccgcg tttatctcat tccacgcctg acactcagtt
      781 ccgggtaggc agttcgctcc aagctggact gtaagcacga accccccgtt cagtccgacc
      841 gctgcgcctt acccggtaac tatcgtcttg agtccaaccc ggaaagacac gacaaaacgc
      901 cactggcagc agccattggt agagggtgta caagagatta ctgatgcaga gttcttgaag
      961 ttagagccaa actacggcta aactggaagg acaaatttgg tggcagcggt cttgtacacc
     1021 ctgttaccac ggttcagaag ttccccagct tactgaacct tcgaaaaacc acctccccag
     1081 gtggtttttt cgtttctgga taagagacta cgacgacaga cggatgatct caagaaaatc
     1141 ctctctaaca ggttatattc agagtaaaaa agtgagctta aatatgactt tttcaataac
     1201 agaagtgcgt gaggggcgta ttcgccgcaa cctttaataa ctccgttggt aatgattaag
     1261 tgttatttac cataacatcc cttgcccgca ccccctgaga ggccctcagc gcgtttctgc
     1321 cgcgtcctct gcgtttccgg cacctttccc tgtccatatc gtgaaaaaac gcgcctgatg
     1381 atttctgcgc gcctgcatgg ctatgcacgg aagtgaatgg cggccggttt cggacgaatg
     1441 ctggcactaa aggcgaattt tgaacaaaaa aaacggacat cgagggtcag gatgtccgac
     1501 aaaatttgca caaacagtca gccggtaccg atcagagagc cggcaaa
//
