LOCUS       NZ_OY754355             2885 bp    DNA     circular CON 01-NOV-2023
DEFINITION  Escherichia coli isolate F1005 plasmid pF1005-2, complete sequence.
ACCESSION   NZ_OY754355
VERSION     NZ_OY754355.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA113542995
            Assembly: GCF_963575355.1
KEYWORDS    RefSeq.
SOURCE      Escherichia coli
  ORGANISM  Escherichia coli
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Escherichia.
REFERENCE   1
  AUTHORS   Leclercq,S.
  TITLE     Direct Submission
  JOURNAL   Submitted (24-OCT-2023) INRAE, ISP, Centre INRAE Val de Loire, Site
            de Tours, Bat 213, 37380 Nouzilly, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/01/2023 10:00:34
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,750
            CDSs (total)                      :: 4,630
            Genes (coding)                    :: 4,443
            CDSs (with protein)               :: 4,443
            Genes (RNA)                       :: 120
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 87
            ncRNAs                            :: 11
            Pseudo Genes (total)              :: 187
            CDSs (without protein)            :: 187
            Pseudo Genes (ambiguous residues) :: 0 of 187
            Pseudo Genes (frameshifted)       :: 57 of 187
            Pseudo Genes (incomplete)         :: 118 of 187
            Pseudo Genes (internal stop)      :: 39 of 187
            Pseudo Genes (multiple problems)  :: 30 of 187
            Pseudo Genes (short protein)      :: 5 of 187
            CRISPR Arrays                     :: 2
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY754355.1.
            Complete genomic sequence of E. coli strain F1005.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2885
                     /organism="Escherichia coli"
                     /mol_type="genomic DNA"
                     /isolate="F1005"
                     /db_xref="taxon:562"
                     /plasmid="pF1005-2"
     gene            147..467
                     /locus_tag="R8832_RS23740"
                     /old_locus_tag="FGAF1005_45500"
     CDS             147..467
                     /locus_tag="R8832_RS23740"
                     /old_locus_tag="FGAF1005_45500"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_097344119.1"
                     /translation="MHTQHDVFIDAIHTKKKLRIRFYSEEDGGYIERVCAPMDYAAGKR
                     IHDGIPRYWVWDFESDKANHSLPLRSERIEYMRNEGEDFDPASFVTWTTAWVIGRNWES
                     YS"
                     /name="hypothetical protein"
     gene            608..1321
                     /locus_tag="R8832_RS23745"
                     /old_locus_tag="FGAF1005_45510"
     CDS             608..1321
                     /locus_tag="R8832_RS23745"
                     /old_locus_tag="FGAF1005_45510"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_135778405.1"
                     /translation="MADYIKSNILSQSYVHVEPEWLNSVSDSEKRKAIVEIHNKVSSFS
                     EERIRFFLDDDVHIEIKFEDGSIRAWVTTYGPVLLLIGSTITNYSSFRESIKHLVSDSQ
                     RVADIINAEVLFQSKSRSKKEVLRVESRKGVIGSIDRINNKIDAIEGRLKRGDCSPTLI
                     NEDLLDLNKLILELFSNIKDDDDAKLIAMALHDGIASLNIKKGRFKIKDSVDQYMYKSL
                     SDEKKLILKNLGSHK"
                     /name="hypothetical protein"
     Typing          complement(1515..1940)
                     /name="rep_cluster_2373"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="81.439"
                     /coverage="96.0"
                     /evalue="3.2599999999999995e-89"
ORIGIN
        1 gaaaggtgcc ggaaacggcc cgttcgcctc aaaatggctc tgaggcgttt tcagcggtgc
       61 gggcaaggga tgttatggta aatactacat gtttagcgta ttttttagtg gttttacctc
      121 tgtgaaaacc atacaaggaa atgactatgc acactcagca tgatgttttt attgatgcaa
      181 tacatactaa aaaaaaattg agaatccgat tttattctga agaagatggc ggttatatcg
      241 agcgagtatg tgctccaatg gattatgctg ccggaaagcg catacatgat gggatccctc
      301 gttactgggt ttgggatttt gagagtgata aagctaacca ttctttgcca ttaagaagtg
      361 agcgtattga gtatatgcgc aatgaaggcg aggatttcga cccagcatct ttcgtaactt
      421 ggactactgc atgggttatt ggcagaaact gggagagtta tagttgagtt agcttttttc
      481 tgaagaggag ggaggcgtca agaagtggcc tctttgcatg aaaaatttcg gatttataag
      541 tatgattttt atgggttttt agactggata gttcctgaga ttttaattta atgtcaagga
      601 cggagttatg gcggattata ttaaaagtaa tattcttagt cagtcatatg ttcacgtaga
      661 acctgaatgg ctgaattcag tgtccgatag tgaaaagcgt aaagcaatcg ttgaaattca
      721 taataaagtc agttcttttt cagaagaaag aattaggttt tttctcgatg atgatgttca
      781 catagagatt aaatttgaag atggatctat tagagcatgg gttacaacgt acgggcctgt
      841 tttactatta attggatcaa cgatcaccaa ttacagtagt tttagggaaa gtatcaagca
      901 cttggtttct gactctcaga gagttgcaga tattattaat gcggaagtgc tttttcagtc
      961 aaaatcaaga agtaagaaag aggttttgcg agttgaatca cgcaagggtg tcattggctc
     1021 tatagataga attaataaca aaatagatgc catagagggg aggctgaaaa gaggtgattg
     1081 ctcgccaact ttaataaatg aagatctatt ggatttgaat aaacttatac tggagttgtt
     1141 ttcaaatatt aaagatgatg atgatgccaa gcttatagct atggcattac atgacgggat
     1201 tgcaagcctt aatataaaga aggggaggtt taaaataaag gattccgttg atcagtatat
     1261 gtataagtct ctctccgacg aaaaaaaatt aattttgaaa aacttaggtt cgcataagta
     1321 gctgcattgt ctcagcttat tgactttagc gaagaggaaa gcgtaacctt cggtaaacga
     1381 aaaaaccacc ctggcaggtg gttttttcga aggttagaaa atcctggcag attttttaac
     1441 cgaggtaact ggctttaacg gagcgcagta accaaatctg tccttccagt gtagctgtag
     1501 tctggccagc acttcaagaa ctctgtgtgt acttgaatgt actttaccgc tccgtaaacc
     1561 agttaccttt ggctaccgcc aatggcgatt tgtcgtgtct ttcagggttg gattcaagag
     1621 tacagttacc tggacaagac gtggtagtcg ggctgaacgg ggagttcgtg catacagccc
     1681 agcttggagc gaaccaccta accagacctc agcatcaggc gtggaatgaa aaaacgcggc
     1741 caataacagc ggagtgatgt gggtaatctg taaggtggga acaggagagc gcacgaggga
     1801 gctacctgcc ggaaacagtg gggatcttta agtcctgtcg ggtttcgcca cttctgattt
     1861 gagcgccgga aatcacctga tttctgggat gctcatcagg agggcgaagc ctatggaaaa
     1921 ccggcaacgc cgcggccttt tttatctctc ttccatcgcc cttcatcgct ttatcctttg
     1981 atatgactgc ccccaccgct cgccgcagcc gaacgaccga gcgtagcgag tcagtgagcg
     2041 aggaagcgga atatctccga gcttatgttc ggcaccgtac acgtcatagc tgcatttttt
     2101 aatacgatgc aggatagggc gaacgccgca aagtgacgtc atctgacgtt cttggattac
     2161 aaaagttaaa gcagcggaca ggaaatgttt tgtgctcaca gccagttctc cagtgttaca
     2221 acacagcggg acaagatgtg tctttggagt accgccggta cgtcaaagac tcttggtcag
     2281 gtttctcccg acatcgcttg atttgctacc cttttgctat ttttttgcta tctcttgagc
     2341 ctttgaggct ttcggttgct ctccttttgc tatctttttg ctactttttt gctatcagac
     2401 tgctacctgt tccttttggc cataaataac caaggcacgt tagcgatgta tacatcgccg
     2461 cgccgcaagg gtgccccttc cgaatcccgt tcatcactgc gtgctgattg atccacgtta
     2521 aatccgcccc cttggcaata aatcctgcga tgcctgacgg cctggccaac gcttcacggg
     2581 cacacagtaa actgcgtacc cgtgaagcgt taagcaggta cacatttacc aagtgctacg
     2641 tctcttctcc gatgcatacc gttcaacacg ggttttgacc ggttttagtc agaccaaaag
     2701 ttgttttgga agaggtttta agcggtgaat caggtacaga ttaaccaacg aacttcgcca
     2761 cgtttactgc cgaaaatccc ccaccggtta cgatatccgc ctgaaaccgc gcgccattca
     2821 cctgcgtgca tagtcatgca ggtgcacaga aatcatcagg cgcgtttttc aggggttggt
     2881 gctgg
//
