LOCUS       NZ_OY725973             2571 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 71, complete sequence.
ACCESSION   NZ_OY725973
VERSION     NZ_OY725973.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725973.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2571
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="71"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(join(1763..2571,1..349))
                     /locus_tag="UHF62_RS18505"
                     /old_locus_tag="BFTSDC17_03714"
     CDS             complement(join(1763..2571,1..349))
                     /locus_tag="UHF62_RS18505"
                     /old_locus_tag="BFTSDC17_03714"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="WP_320582670.1"
                     /translation="MADTGYFDSVSANLKTGVGAQVKGISEGVKANSDAGVSPSVNALD
                     TGVKAAAAIGGLADGLSEAAMLPVLGAMGMKGMACLPISKQLDPVIGVDIHLVTIPPSP
                     VVPMPHPYVGVLLMEDRWNTDTERRDLTVWIFDEESFVPIAMIKEGSSYSILTDQLGTP
                     TEAYDAEGNEVWSRVLDMDGNVIEETGNKGMIPFLFQGQYYDCETGLAYNRFRYYSPQM
                     GMYVSQDPIGLAGGILNLYGYVDNTNTWIDILGLGKESQARRIREQGKHTRNSEYPHGN
                     SPKIREEVIKRHTGADGKIRGEDGVIIPKSEVTVEHRMPVVTHWNQEGYNQSREQRAAW
                     YNSSENLTVLRKSSNSSAGAQLGETYRQDVGSQYTSKRKKKQTYD"
                     /name="RHS repeat-associated core domain-containing
                     protein"
     gene            complement(364..1770)
                     /locus_tag="UHF62_RS18510"
                     /old_locus_tag="BFTSDC17_03713"
     CDS             complement(364..1770)
                     /locus_tag="UHF62_RS18510"
                     /old_locus_tag="BFTSDC17_03713"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_149947630.1"
                     /translation="MINMHSELEEYNAVAIDGYKNIFIAKEPYTAYTYIYTVFNKLIFR
                     ISKRSCLDQEKFIKDCLVIFDIIANQNISAVEVKKISSITGISNFSSLILIPYEYCNHN
                     PVSEKVLKKTIVVAPIYNCEFSGDENKEELEAMVNGPLATINLDNWEREISPKLKMSYV
                     NYSTQSGSRSKIFKIAKSQNLHWAISVLKDHVSYIGFENFKHEKYKVALSNNCPFLTPT
                     IEYTKGDFYQIINDILWGNIDYPKQVALSEKINIDAVEANNSKLIKLVDNYLNEFILKS
                     YHFDKIKQKKNSYTFHNDNKQIIGALEYSFVSSNYYKDNGCSLTMCLEAHISKCKVSDI
                     LDKIGLFCNNECFIFNNPIGDYSKNSTLLKFYIAHGIYDDIISNASFMIKLIQKMNNLI
                     EGNMEVIKDIETYPSLYKYPLATSLVILYLNNCNTEQSINQLLEVAKNMQFSDLDKFTH
                     ILTEVSRYFN"
                     /name="hypothetical protein"
ORIGIN
        1 ggagaacccc gacataaggg tgaggcatgg gcacgacggg ggacgggggt atcgtcacga
       61 ggtggatgtc cacgccgatg accgggtcga gctgcttgga gatgggcagg caggccatgc
      121 ccttcatgcc catggcaccc agcacgggga gcatcgcggc ctcgctcagg ccgtcggcaa
      181 ggccgccgat ggcggctgcc gccttgaccc ccgtgtcgag ggcattgacg gacggtgata
      241 cgccggcgtc ggagttcgcc ttgacgcctt ccgagatacc cttgacctgc gcgcctacgc
      301 cggtctttag gttggcactt acgctgtcga aataacctgt gtccgccata acctttataa
      361 tggttagtta aaataacgag atacctccgt taatatatga gtaaatttat ctaaatcact
      421 aaattgcata tttttagcaa cttctaataa ttgatttatt gattgctctg tgttacaatt
      481 attcagataa agaattacta atgatgtggc taaaggatac ttatacaaac tcgggtatgt
      541 ttcaatatcc tttataactt ccatatttcc ttctatcaaa ttattcattt tctgtatcaa
      601 tttaatcata aaagaagcat ttgaaatgat gtcatcataa attccatgcg caatatagaa
      661 ttttagtaaa gtactatttt tagaataatc cccaatagga ttattaaaaa taaaacattc
      721 attattacaa aacaatccta ttttatccaa aatatcagaa accttacatt tactaatatg
      781 tgcctctaaa cacattgtca gggaacatcc attatcttta taataatttg aagaaacaaa
      841 agaatactct aaagcaccta ttatttgctt attatcatta tgaaatgtat aactattttt
      901 cttttgctta attttgtcaa aatggtagga ttttaaaata aattcattca aataattatc
      961 aactaatttg attaatttgg aattgtttgc ttcaactgca tcgatgttga ttttttctga
     1021 taaagcaact tgtttaggat aatcaatatt tccccataag atatcattta taatttgata
     1081 aaaatcacct ttagtatatt ctattgttgg tgttagaaat gggcaattat tacttaatgc
     1141 aactttatat ttttcatgtt taaaattttc gaatccaata taagaaacat gatcttttaa
     1201 cacactaata gcccaatgta aattttgaga ttttgcaatt ttaaatatct tactacgact
     1261 accactctgt gtcgaataat taacatatga cattttcaat ttaggagaaa tctccctttc
     1321 ccaattatca agatttattg ttgcaagagg accattaacc atagcttcta attcttcttt
     1381 gttttcatca ccagaaaact cacagttgta tataggagca acaactatcg ttttttttaa
     1441 tactttttca cttactggat tgtgattaca atattcataa ggaatcaata ttaaagacga
     1501 gaaattagaa ataccggtta ttgatgaaat tttctttact tctactgcac taatattttg
     1561 gttcgcaata atatcaaata taactaagca atccttgata aacttttctt gatcaagaca
     1621 actcctttta gaaattctga atattagttt attaaatact gtatatatgt atgtatatgc
     1681 agtatatggc tcttttgcaa taaagatatt tttatatcca tctattgcta cagcattata
     1741 ttcttcaagt tctgaatgca tattaatcat aagtttgttt tttctttcgt ttactggtat
     1801 actgtgagcc aacatcttgc ctataagttt cacccaattg tgctccagca ctactatttg
     1861 atgattttct taatacagtt aaattttccg agctattata ccaagcagca cgttgttctc
     1921 gtgattgatt atatccttcc tgattccaat gggtaactac gggcattcga tgctctactg
     1981 taacttcgct tttagggata attacaccat cttcacctct aatttttcca tcagctccag
     2041 tgtgacgctt tataacttct tctcttattt ttggagaatt tccatgagga tattcactat
     2101 ttctggtatg cttcccttgt tctctaattc ttcttgcttg gctctctttt cctaatccca
     2161 gaatgtcaat ccacgtatta gtgttatcga catatccgta aaggtttagt attccgccag
     2221 ccagtccaat cggatcttgc gagacataca ttcccatctg tggcgagtag tacctgaatc
     2281 tgttgtacgc caaccctgtc tcacagtcat aatactgccc ttggaacagg aacggtatca
     2341 ttcccttgtt acccgtctcc tcgatgacgt tcccgtccat gtcgagcacc cggctccata
     2401 cctcgttgcc ctcggcatcg tatgcctccg tcggcgttcc gagttggtct gtcagtatcg
     2461 agtaggagct gccttccttt atcattgcta tcggtacgaa ggactcctcg tcgaagatcc
     2521 ataccgtcag gtcacggcgt tccgtgtccg tgttccacct gtcctccatg a
//
