LOCUS       NZ_OY725972             2643 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 70, complete sequence.
ACCESSION   NZ_OY725972
VERSION     NZ_OY725972.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725972.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2643
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="70"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            186..1751
                     /gene="istA"
                     /locus_tag="UHF62_RS18495"
                     /old_locus_tag="BFTSDC17_03711"
     CDS             186..1751
                     /gene="istA"
                     /locus_tag="UHF62_RS18495"
                     /old_locus_tag="BFTSDC17_03711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010535746.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21 family transposase"
                     /protein_id="WP_055279371.1"
                     /translation="MKIRIKHILRCYQSGMSIRSISSSLQISRNTVKRYIHIYEDMGIE
                     LERLLKMDEHHLHELFGTETDNESTGSAEYKYLQEHIPEYIKRLKSRGTTRRSLYEEYL
                     RNRPQGYSYCSFCLYLRREREVKVPVGRIDHIAGDQMYVDFAGDKLYISDRNTGDKVPV
                     EVFAAILPCSQITYYEAVPSQKKEYLIQACENAFHYFGGVPNAIVPDNLKSAVTKPGGI
                     EPVINDDFAAFADHYGCVVFPARVRKPKDKALVENAVRLLYREVYSKMTGLKFNDLEAL
                     NIEIMKHTDALNSRKMYNRSYSRKERFIEVEKDRLHTLPTTRFISKSRKTATVMRNSYV
                     SLNNHYYSVPKEYIGDTVELLYDGDTVEIYHKFRHITTHRRDDTPFTYSEKPSHKLPGV
                     LHEYRIRMDDVYCKARKIDPIVEEYIKLVAVAKKYPAQAVRSADGILSLVERFGHDRMV
                     LACQIAMESCMFGFNELESILVNREDEKYHVQMEGQAPELTPKHRNLRGKDYFNSKNVD
                     KNDK"
                     /name="istA"
     gene            1741..2514
                     /gene="istB"
                     /locus_tag="UHF62_RS18500"
                     /old_locus_tag="BFTSDC17_03712"
     CDS             1741..2514
                     /gene="istB"
                     /locus_tag="UHF62_RS18500"
                     /old_locus_tag="BFTSDC17_03712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007760225.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS21-like element helper ATPase IstB"
                     /protein_id="WP_055279370.1"
                     /translation="MTSNNKTNRTVEKNMDRIMELLSKLRFYGMLETYRNDCRTTSSDG
                     MTNDEFLKWLLESEYDYRRNVSIERLIRSANFRYKAYMEKIDYTIKRNLDRNQLERLAS
                     LDFIKDGQNVFITGSSGTGKSYIASAIGYEACKNGVRTLYSNASKLMGQLKMAKNKGTI
                     ESEMKKIEKCSLLILDDLFLIGLDARERSILMEIIEDRHGLKSIIITSQLPVESWYDAI
                     GDPTVADAILDRIVHTAHKIELTGDSVRKINAKKK"
                     /name="istB"
ORIGIN
        1 tggaaaatat aaagtcactt gacccactat tgtaaaagtg acctgaccca cctttataac
       61 cgaaactgag ccactaagat tataataaaa attgacccta tagaattacc acatttcagt
      121 cttgtttttt gtactttaaa aagcatttta acccggtatt attaaccgaa taaaaatttt
      181 aaagaatgaa aataagaatc aaacacatac tgcggtgcta ccagtcagga atgagtatcc
      241 gtagtatcag ttcttctctt cagatttcac gtaatacagt aaaacgatat atccatatat
      301 acgaagatat gggtatagag ttggaacgcc tgttgaaaat ggacgagcat catctgcacg
      361 agcttttcgg tacggagact gacaacgaat caacaggatc tgcagagtat aagtatcttc
      421 aagaacatat acctgagtac attaaacgac ttaaatcccg tggaacaaca agaaggtcct
      481 tgtatgagga atatctgaga aaccgtcccc aaggttacag ctattgttca ttctgcctgt
      541 atctcagacg tgaaagggag gtaaaagtac cggttggacg catagatcat atagccggag
      601 atcagatgta tgtggatttt gccggtgaca aactctatat ttcagacagg aatacaggtg
      661 ataaggttcc cgtagaagtc tttgctgcaa tacttccttg cagccagatt acttattacg
      721 aggctgtacc atcacaaaag aaagaatatc ttatccaggc gtgtgaaaat gctttccatt
      781 attttggagg tgtaccaaat gccatagttc ccgacaacct caaatctgcc gtaacaaagc
      841 ccggtggaat agagcctgta ataaatgatg attttgcagc ttttgcagac cattacggat
      901 gcgtagtctt tccggcaagg gtgcgcaagc ccaaagacaa ggctttggtt gaaaatgccg
      961 taagactgct ttacagggag gtctattcaa agatgacagg attgaaattc aatgatcttg
     1021 aagccttgaa catagaaata atgaaacata cggatgcatt gaacagccga aagatgtaca
     1081 accgcagcta cagccgtaag gagcgtttca tagaggtaga gaaagacagg ctgcatacat
     1141 taccgactac aagatttata tcaaaaagtc ggaaaacggc aactgtcatg agaaacagtt
     1201 atgtgtcgct taacaatcac tattacagtg tccctaaaga gtatatcggc gatactgtag
     1261 aattactgta tgatggggat acagtggaga tatatcataa attcaggcac attacgacac
     1321 atcgcaggga tgatacacct ttcacatatt cagaaaaacc ttcccataaa cttcccggag
     1381 tactacatga atacagaatc agaatggatg atgtatactg caaggcacgt aaaatcgatc
     1441 cgatagtaga ggagtacata aagcttgtgg ccgtagccaa aaaatatccg gctcaagcag
     1501 tacgttcagc tgatggtata ttaagtcttg tggaacgttt cggacacgac agaatggttc
     1561 ttgcatgcca gatagcaatg gaatcctgca tgttcggatt caacgagctt gaaagtattc
     1621 ttgtaaacag ggaagatgaa aagtatcatg tccaaatgga aggacaggct ccggaactta
     1681 cccctaaaca cagaaatctc agaggtaagg attattttaa ctctaaaaac gtagataaaa
     1741 atgacaagta ataataaaac aaatagaaca gtcgaaaaaa atatggacag aataatggaa
     1801 ttactctcca aattacgttt ttacggtatg cttgaaacat acagaaatga ctgtaggaca
     1861 acatcctctg atggtatgac aaatgatgaa ttccttaaat ggcttctaga aagtgagtat
     1921 gattacagac gcaatgtaag cattgagcga ctgataaggt ctgccaactt cagatataag
     1981 gcatatatgg agaaaataga ctataccata aaacgtaacc ttgaccgtaa ccagcttgag
     2041 agacttgcat ctcttgattt tataaaagac ggacagaatg tttttatcac gggaagttct
     2101 ggtacaggta aaagctatat tgcttcagca ataggatatg aagcatgcaa aaatggagtc
     2161 agaactttat actccaatgc gtcaaagctt atgggacagc ttaaaatggc caaaaacaag
     2221 ggaactatag aatctgaaat gaaaaaaatt gaaaagtgtt cactgcttat tctagacgat
     2281 ctgtttctta taggactgga tgccagggaa aggtcaatcc ttatggaaat aatagaagac
     2341 agacacggat taaaatcaat cataataaca tcacaacttc ctgtcgaaag ttggtatgat
     2401 gcaattggtg atcctacggt agcagatgca atcctggaca gaattgtaca tactgcacac
     2461 aaaattgaac taacaggaga ttctgtaaga aagattaatg ctaaaaagaa gtagtatctg
     2521 ctataaagaa ttataactga aactgatccg ggttaaaatg catttttctc tacttaaatc
     2581 tcatattttt ttgatgggtc aatcaggagt ataatagtgg gtcaagtgac tttatatttt
     2641 cca
//
