LOCUS       NZ_OY725971             3008 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 69, complete sequence.
ACCESSION   NZ_OY725971
VERSION     NZ_OY725971.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725971.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3008
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="69"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(124..3002)
                     /locus_tag="UHF62_RS18490"
                     /old_locus_tag="BFTSDC17_03710"
     rRNA            complement(124..3002)
                     /locus_tag="UHF62_RS18490"
                     /old_locus_tag="BFTSDC17_03710"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
                     /name="23S ribosomal RNA"
ORIGIN
        1 gggaagaggt ggaaccctcg tgctataacc acctgaagaa attcaataag gttatgacat
       61 gatgaaaagt aaaacttcag tgtctagcaa gctaaacgta tatatcgcgc cccgtacaag
      121 tccgaaagaa agtgaacggg caattagtaa tgctcggctg tgatgttacc acctttacac
      181 ctgcatccta tcaacgtcat cgtctttgac gaccctaaga aatctaatct tgtggctggc
      241 ttcgtactta gatgctttca gcacttatcc aatcccgact tagataccca gcaatgcacc
      301 tggcggcaca actggtaaac cagaggtcag tccaacacgg tcctctcgta ctagtgtcag
      361 agccacgcaa atttcatacg cccacgatag atagagaccg aactgtctca cgacgttctg
      421 aacccagctc gcgtgccact ttaatgggcg aacagcccaa cccttgggac cttctccagc
      481 cccaggatgt gacgagccga catcgaggtg ccaaacccct ccgtcgatat gagctcttgg
      541 gagggatcag cctgttatcc ccggagtacc ttttatcctt tgagcgatgt cccttccatg
      601 cggaaacacc ggatcactat gctctagttt cctacctgat cgacttgtat gtctcccagt
      661 caagcgccct tatgccatta cactctgcgg acggttacca atcgtcctga gggcaccttt
      721 agaagcctcc gttacacttt tggaggcgac caccccagtc aaactaccca ccaaacagtg
      781 tccccgtacc acgggttaga actcaaataa tcaaagggcc gtatttcaac agcgactcca
      841 caaatactgg cgtacctgct tcaaagtctc cggcctatcc tacacatcaa ttacccaaat
      901 tcaatgttaa gctatagtaa aggttcacgg ggtcttttcg tcccatcgcg ggtaatcggc
      961 atcttcaccg atactacaat ttcactgagc tcacggttga gacagtgtcc agatcattac
     1021 accattcgtg caggtcggaa cttacccgac aaggaatttc gctaccttag gaccgttata
     1081 gttacggccg ccgtttactg gggcttcaat tcaatgcttc tcttgcgatg acatctcctc
     1141 ttaaccttcc agcaccgggc aggtgtcagg ctgtatacgt aatctttcaa tttggcacag
     1201 ccctgtgttt ttgttaaaca gttgcctgga cctattctct gcgcccaact ctcgttggga
     1261 ccctttatcc cgaagttaca gggtcaattt gcctagttcc ttaaccgtga atcactcaag
     1321 cgccttagta tattcaaccc gactacgtgt gtccgtttgc ggtacgggta cctaaaggat
     1381 taagtttagc ggattttctc gggagtatgt ttacacgcac tattaccgtt tcccgaagga
     1441 attggtatac tatcaggttc gactctcttt gtggatttgc ctgcaaagat caacatctac
     1501 acccttcaac ggactattcc gtcagtccgc ggcgctgtca cgactccgtc tccacgtcac
     1561 tccttaaggt agtacaggaa tattaacctg ttctgccatc ggcatcaccg ttcggctgag
     1621 ccttaggacc cgactaaccc tgatccgatt agcgttgatc aggaaacctt agtctttcgg
     1681 cgagggggtt tctcaccccc tttatcgtta cttataccta catttgcttt tccacacgct
     1741 ccagcaaagc tcacgcttca ccttcgacgc agagtggaat gctcccctac cgatgtttac
     1801 acatcccata gcttcggtaa attgcttaat gcccgattat tatccacgcc aaactcctcg
     1861 actagtgagc tgttacgcac tctttaaatg aatggctgct tccaagccaa catcctagct
     1921 gtcttagcaa tctgacttcg ttagttcaac ttagcaatta tttcgggacc ttagctgatg
     1981 gtccggattc ttctccttta ggacatggac cttagcaccc atgccctcac tcccgggata
     2041 gaactactgc gcattcggag tttatcaaga cttgataggc ggtgaagccc tcgcatctta
     2101 tcagtcgctc tacctcacag tagtaattcc cgaggctgca cctaaatgca tttcggggag
     2161 tacgagctat ctccaagttt gattagcctt tcacccccac cctcagttca tccggaagct
     2221 tttcaacgct tatcggttcg gtcctccagt tagtgttacc taaccttcaa cctgaccaag
     2281 ggtagatcac ttggtttcgc gtctactcct tccgactagt cgccctatta agactcgctt
     2341 tcgcttcggc tacacatttt taaatgctta accttgccgg aaaaagtaac tcgtaggttc
     2401 attatgcaaa aggcacgccg tcacttctta cgaagctccg accgcttgta ggcgcacggt
     2461 ttcagggact atttcactct tctgttcgaa gtgcttttca cctttccttc acagtactgg
     2521 ttcgctatcg gtctctcggg agtatttagc cttaccggat ggtcccggct gattcacgca
     2581 agatttctcg tgtcccgcgc tactcaggat accactacgc ttcgtttagc ttcgaatacc
     2641 ggactatcac cgtctatggt cccattttcc aaagggttct tctcactaaa tttcttgcga
     2701 catcgtggtc ctacaacccc aatattgccg taacaacatt ggtttgggct aatccccgtt
     2761 cgctcgccac tacttgggga atcattatta ttttcttttc ctacaggtac taagatgttt
     2821 cagttccctg cgttagcctc ttgccatgca agatgtcatt ccttcagaat gacgggttgt
     2881 cccattcgga aatcttcgga tcaaaggtta tttgcaccta cccgaagctt atcgcagctt
     2941 atcacgtcct tcatcgcctc cgagagccaa ggcatccgcc atgcgccctt gcttactttc
     3001 tttcaaac
//
