LOCUS       NZ_OY725970             3850 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 68, complete sequence.
ACCESSION   NZ_OY725970
VERSION     NZ_OY725970.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725970.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3850
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="68"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            <121..336
                     /locus_tag="UHF62_RS18460"
                     /pseudo=""
     CDS             <121..336
                     /locus_tag="UHF62_RS18460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008022120.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            556..2358
                     /locus_tag="UHF62_RS18465"
                     /old_locus_tag="BFTSDC17_03705"
     CDS             556..2358
                     /locus_tag="UHF62_RS18465"
                     /old_locus_tag="BFTSDC17_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional DNA primase/helicase"
                     /protein_id="WP_195398666.1"
                     /translation="MRNFASYDVDVRRRTSGVVKTVCNKCQATRHNKRDRSLRVNVDTG
                     HCHCYHCGADFYVPDEAEEREKAERRAARQRRAAAVPRHFQRPVFDPARTTLSESVERW
                     LVETRCIPQGVIAGLRITEQEEFMPQSGQKERCVCFNYFEDGQLVNTKFRSVDAKHFKM
                     VQGAELIPYNIDSVLGQTSCIIHEGELDAASSLAAGFKSVISVPAGANSNLSWLDRFME
                     THFEDLTEVIIAVDTDSAGLQLRDELINRLGAERCRVVAYGPGCKDANEHLCKYGVASL
                     RVAIEQAAEVPLEGVFTATDLHSDLLALFENGFGPGAETGWEEMDKICTYERGRLIILT
                     GVPGAGKSEWLDELVLRLCLRHQWKIAFFSPENTPIVYHIRKLVEKLTGHRFQKGCGIS
                     EGLLMRSEEFLTDNVSHISLKGNATPERVLAKAHELVVRRGCRILVIDPLNRLDHTPQP
                     GQTETQYLSNFLNMITEFAVQHNCLVVLVAHPRKMNRNPVTNTTPRVEMYDINGSADFF
                     NKADYGIVVERDKGVGVTRVYVDKVKFKHLGMGGMVTFAYDPVSGRYLPCVESHDPAVP
                     VEQRVGGVTFDSSCWLPDKELFES"
                     /name="bifunctional DNA primase/helicase"
     gene            complement(2420..2677)
                     /locus_tag="UHF62_RS18470"
                     /old_locus_tag="BFTSDC17_03706"
     CDS             complement(2420..2677)
                     /locus_tag="UHF62_RS18470"
                     /old_locus_tag="BFTSDC17_03706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4248 domain-containing protein"
                     /protein_id="WP_007753257.1"
                     /translation="MKTDAEPTDDEKKEKTFEYRSYGKGELAMLYLPDIQQQSAVDRFN
                     KWIAAAPGLKERLIATGMNPRSRSYTPAQVRLIVEVLQEP"
                     /name="DUF4248 domain-containing protein"
     gene            2846..3154
                     /locus_tag="UHF62_RS18475"
                     /old_locus_tag="BFTSDC17_03707"
     CDS             2846..3154
                     /locus_tag="UHF62_RS18475"
                     /old_locus_tag="BFTSDC17_03707"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007838333.1"
                     /GO_function="GO:0046872 - metal ion binding [Evidence
                     IEA]; GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing protein"
                     /protein_id="WP_007753256.1"
                     /translation="MKRTDIVHRIAETMHRIAPTARTILYGSEARGEARHDSDIDLLIV
                     VDEKELTPETELTLRRPLSELEAQTGVAINTLVVLKRVWENITTPLTLNINREGIVL"
                     /name="nucleotidyltransferase domain-containing protein"
     gene            3194..3442
                     /locus_tag="UHF62_RS18480"
                     /old_locus_tag="BFTSDC17_03708"
     CDS             3194..3442
                     /locus_tag="UHF62_RS18480"
                     /old_locus_tag="BFTSDC17_03708"
                     /inference="COORDINATES: protein motif:HMM:NF017020.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antitoxin"
                     /protein_id="WP_230325674.1"
                     /translation="MNRHIEANTHNGVKTQLSMHFVRTGLLDLEHSTTFGLLFDKRHSS
                     DYGDFAYCDAALVDVLRPRAEAFINAVEQLVRSERTA"
                     /name="antitoxin"
     gene            3603..>3731
                     /locus_tag="UHF62_RS18485"
                     /old_locus_tag="BFTSDC17_03709"
                     /pseudo=""
     CDS             3603..>3731
                     /locus_tag="UHF62_RS18485"
                     /old_locus_tag="BFTSDC17_03709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008647256.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /name="DNA-binding protein"
ORIGIN
        1 ggggacagtg aataaaatta aagcggtaaa aagacagatg tacaataggg caggaattaa
       61 actactgaga gcgaagatta tttattcaca atagaagaag taccaccaaa tttgacgaag
      121 aaccattata tcgctgccgg atcgcctact tgccgtatgc tgcgcgaaga gttgatgcgg
      181 gaaatcaagg agcgggagag cagggatgtg agccgttttg aaagtgttgt ggatggaaaa
      241 cggatgtatc tgggacgtct tattcccaac agcgcaccgc caagacccga caactcggcg
      301 gtgtgggatg atgcgcacaa aagatggggg cattagttca tcctacgtct ggacaccatt
      361 catcctacgt ctgagtgccg ttcaccccat gcttgaatgt cattcatccc acgcttgagc
      421 gtcattcatc ccacgtccga aagcggttca tcccgtattt gaaagtatca atctctccgt
      481 gttctacacg aagcgtttgt cttcctttcc ctgtgtgtgg gaaatataat tattcattta
      541 aaaataaagc aagttatgag aaattttgcc agttacgatg tcgatgtccg tcggaggaca
      601 agcggcgtag tgaaaactgt ttgtaataaa tgtcaggcca cgcgccacaa caaacgcgac
      661 cgttcgctgc gtgtcaacgt tgatacgggg cattgtcact gttatcattg cggggcggac
      721 ttttacgtcc ccgacgaagc ggaagagcgt gagaaagccg aacggcgtgc tgcccgccag
      781 cgtcgtgcgg cagccgttcc ccgtcatttc cagcgtccgg tgttcgatcc ggcacggact
      841 acgctttccg aatctgtaga acgttggctg gtggagacac gttgcatccc gcagggcgtc
      901 atcgccggac tgcgcatcac ggaacaggag gaattcatgc cgcaatccgg tcagaaggag
      961 cgttgcgtct gcttcaacta tttcgaggac ggacaactgg tcaacacgaa attccgtagt
     1021 gtggacgcga agcatttcaa gatggttcag ggtgccgaac tgattcccta caacatcgac
     1081 tccgtgctcg gacagacttc ctgcatcatc cacgaaggcg aactggatgc cgcctcttcc
     1141 cttgccgccg gattcaagag cgtgatttcc gtccctgccg gagccaactc gaacttgtcc
     1201 tggctcgacc gtttcatgga gacgcatttc gaggatttga cggaggttat cattgccgtc
     1261 gataccgatt ctgccggact gcaactgcgt gacgaattga tcaaccgttt gggtgccgag
     1321 cgttgccgtg tggtggcgta cgggcccggc tgcaaggatg cgaacgagca tctgtgcaaa
     1381 tacggggttg ccagtctgcg ggtagccatc gagcaggcgg cggaggttcc gctcgaaggg
     1441 gtgttcacgg ccaccgacct gcacagcgac ctgcttgctc tttttgagaa tggtttcgga
     1501 ccgggcgcgg aaaccggctg ggaggaaatg gacaagatct gcacttacga acgggggagg
     1561 cttatcatcc tcacgggagt gccgggcgcg ggaaaatcgg agtggctcga tgagctggtg
     1621 ttgcggcttt gtctgcgcca tcagtggaag atcgcttttt tcagtccgga gaatacgccg
     1681 attgtctatc acatccgaaa gttggtggag aagctgaccg gacaccgttt tcagaagggg
     1741 tgcggcattt cggaagggct gctgatgcgg tcggaggagt ttcttaccga taacgtgtcg
     1801 catatctctc tgaaggggaa cgccacgccg gagcgggtgc ttgcgaaggc gcacgagctg
     1861 gtggtgcggc gggggtgccg tattctggtg atcgacccgc tcaaccggct cgaccacact
     1921 ccgcagccgg gacagacgga gacgcaatat ctttccaatt tcctgaatat gattacggaa
     1981 tttgcggtgc agcataattg cctggtggtg cttgtcgccc atccgcgcaa gatgaaccgt
     2041 aacccggtga cgaacactac tccgcgcgtg gagatgtatg atatcaacgg ctctgccgat
     2101 ttcttcaata aggcggatta tggtattgtg gtggaacgtg acaagggggt gggggtgacc
     2161 cgtgtgtatg tggataaggt gaagttcaaa catctcggaa tgggtgggat ggtgactttc
     2221 gcgtatgatc ccgtgagcgg gcgttacctg ccgtgcgtgg aatcgcatga tccggctgtt
     2281 cccgtagaac agcgcgtcgg aggtgtgacg ttcgactcca gttgctggct gccggataag
     2341 gagctgtttg agtcgtaagc ggcactcgta ctcagggttc ttgcggtagt cgtactcaag
     2401 gttcttgcag tagtcgtact caaggttctt gcagtacttc tacgattagc cgtacttgtg
     2461 cgggggtata gcttctgctt cggggattca tgccggtggc gatgagtcgt tctttcagtc
     2521 ccggagcggc ggctatccat ttgttgaaac ggtctaccgc actctgttgt tgtatgtcgg
     2581 ggaggtacaa catggcaagc tccccttttc cgtagcttcg gtattcaaat gttttctctt
     2641 tcttttcgtc atcggtcggc tctgcatctg tcttcatttt ctgattgttt ttagtccgta
     2701 tttatagagt gtaaagttac gcttttttac cggatttgcc aagctgttca ggctgttttt
     2761 gaggatgaga taaaaagaaa atgaaagaaa atataggttt tagctattct tttcttaact
     2821 ttgtgggaga ggaggaaaat agcttatgaa acgtacagat attgttcatc gtattgcaga
     2881 gacaatgcat cgcatagcgc ctacggcacg taccatactt tatggctcgg aagctcgtgg
     2941 ggaagcccgg catgattctg atatagactt gcttatcgta gtggatgaga aggaactgac
     3001 accggaaacc gagcttactt tgcgccgtcc tttaagcgaa ctggaagcgc aaacgggggt
     3061 agctattaat acattggtcg tgttgaaacg tgtatgggaa aatattacta caccactgac
     3121 acttaacatt aatcgggaag gcattgtgtt atgaaagtat tatgcttgtt attatgccgc
     3181 gtctgctctg ttgttgaacc gtcatattga ggctaatacc cataatggag taaaaacaca
     3241 actttcaatg cattttgtcc ggacgggttt gcttgatttg gaacatagta caactttcgg
     3301 tttgcttttt gataaacgcc atagtagcga ctatggtgac tttgcttatt gtgacgctgc
     3361 tctggtggat gtgcttcgtc cgcgtgcgga agcattcatt aatgctgtgg agcaattggt
     3421 aagaagtgag cgcacagctt aaaaaaaact gttttttgct cttattcctt gttatccttt
     3481 cttaatccgt tctaatccct cctagtccgg tgtaatccgt taatccgtct ttcggttgtc
     3541 gtacttttgt tgtaccaaca gaaaggaaga atgtccttct tttcgtagaa acaacaattt
     3601 ttatggcaac agttacagtg gtgcgctata agcgcagaaa acgaatcagc gatgcggatt
     3661 cgccgatggt atttgccctc aaacctaagt cgggggagtc aaaaatctat tcaatagagg
     3721 cgcttggaaa atataaagtc acttgaccca ctattgtaaa agtgacctga cccaccttta
     3781 taaccgaaac tgagccacta agattataat aaaaattgac cctatagaat taccacattt
     3841 cagtcttgtt
//
