LOCUS       NZ_OY725968             4404 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 66, complete sequence.
ACCESSION   NZ_OY725968
VERSION     NZ_OY725968.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725968.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4404
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="66"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            <117..386
                     /locus_tag="UHF62_RS17905"
                     /pseudo=""
     CDS             <117..386
                     /locus_tag="UHF62_RS17905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015546403.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA];
                     GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /name="tyrosine-type recombinase/integrase"
     gene            412..1530
                     /locus_tag="UHF62_RS17910"
                     /old_locus_tag="BFTSDC17_03700"
     CDS             412..1530
                     /locus_tag="UHF62_RS17910"
                     /old_locus_tag="BFTSDC17_03700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004323783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDDEXK nuclease domain-containing protein"
                     /protein_id="WP_237924710.1"
                     /translation="MDFEALVKHISTIQNTLQAQAAHAVNLTLTSRNWLMGCYIVEFEQ
                     NGEERATYGEQLLKKLEQRLNTKGLNERRFREFRRLYLVYPQLREEILQYIMTGNEIRH
                     TLSAEFTEPIRHSMCAELQASELQHNKWSIPAERLFNKLPYSHLKFISKIENPTKRAFY
                     EMEAIRGCWSARELERQISSLYYERSGLSKNKEALSALVQQQVTLLQPKDVINTPISLE
                     FLGLNECALVTENDLEQSILDNLQRFLLEMGHGFCFEARQKRILIDEDYYFADLVFYHR
                     ILKCHVIVELKIDKFRYEYASQLNMYLNYFKAEVMQPDDNPPIGILLCTEKGDTLVKYA
                     TAGLDPNIFVQKYMIELPSEEEIKAFIASSNY"
                     /name="PDDEXK nuclease domain-containing protein"
     gene            1692..2249
                     /locus_tag="UHF62_RS17915"
                     /old_locus_tag="BFTSDC17_03701"
     CDS             1692..2249
                     /locus_tag="UHF62_RS17915"
                     /old_locus_tag="BFTSDC17_03701"
                     /inference="COORDINATES: protein motif:HMM:NF012257.3"
                     /GO_function="GO:0030552 - cAMP binding [Evidence IEA];
                     GO:0003700 - DNA-binding transcription factor activity
                     [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="WP_195399114.1"
                     /translation="MESSELSLLKQFIIKNGTMKSFKKKEPFITEGNKSTYVGFVKSGL
                     FRYVKLDNRGTEHIIGFAFQNEYIAEYHSYICKIPSLLTIEAATNSVAYVISLETLHAF
                     WETDIQTLRLRSIVAEKLYAQFYERVISLHCDTAEERYLKLIQQYPEVTNKLSLKDIAS
                     YLSVTPETVSHIRKKITTSRIS"
                     /name="Crp/Fnr family transcriptional regulator"
     gene            2316..3089
                     /locus_tag="UHF62_RS17920"
                     /old_locus_tag="BFTSDC17_03702"
     CDS             2316..3089
                     /locus_tag="UHF62_RS17920"
                     /old_locus_tag="BFTSDC17_03702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009860066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="WP_195588793.1"
                     /translation="MQKRQSDRAMYFKELAATSRKYYIPYIQTYKAIKTGMNILEIGCG
                     DGGNLLPFSEMGCNTTGIDIAESRIKDAKRFFKEVNAKGMFIASDVFKINDLENCFDIV
                     ICHDVLEHIDNKERFLIDLKKFLSKDGIIFMSFPAWQMPFGGHQQICKSWLASHLPFIH
                     LLPKLLYVGLLRLCHEKQETINELLSIKHTQCSIESFRKIALGEYKIINQQFYFINPHY
                     EIKFGIKPRKLSPIISSIPFIRNYFTTSFFCILKI"
                     /name="methyltransferase domain-containing protein"
     gene            complement(3743..>4102)
                     /locus_tag="UHF62_RS17925"
                     /old_locus_tag="BFTSDC17_03704"
                     /pseudo=""
     CDS             complement(3743..>4102)
                     /locus_tag="UHF62_RS17925"
                     /old_locus_tag="BFTSDC17_03704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007479988.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /name="hypothetical protein"
     gene            complement(4230..>4403)
                     /locus_tag="UHF62_RS17930"
                     /pseudo=""
     CDS             complement(4230..>4403)
                     /locus_tag="UHF62_RS17930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007760225.1"
                     /GO_function="GO:0005524 - ATP binding [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /name="ATP-binding protein"
ORIGIN
        1 cttaatgatg tggtgtcttt aaagttacta aaaagcaaac atatctacaa cttttaatag
       61 gattaagaaa gaagaagacc ggtgaaataa aaaagagatt accaccaaat ttgacgaaga
      121 accgtttgat attcgatttg cctacatacg aaagctgctg caaatcagta aagcgttggg
      181 taaaaagagc cggaatagac aaacacataa gctggcattg cgcccgacat tcatttgccg
      241 tgaatattct gaacaatggg gcaaatatca agaccgtagc cagcctttta gggcacagcg
      301 gattgaagca taccgagaaa tacacccgtg ccgtggataa attgaaagag gaagcaataa
      361 acagcttgcc tgaactaaag ttttaaccac aaaagactta tctttgcaac tatggacttt
      421 gaagcattag taaaacatat cagtacgata cagaacacgt tgcaggcaca agccgcacac
      481 gctgtaaacc tcacccttac ttcccgtaac tggcttatgg ggtgctatat cgtggaattt
      541 gagcagaacg gggaagagcg tgccacctac ggtgaacaat tgttgaaaaa gctggaacaa
      601 cggctgaata caaaaggtct gaatgaacgt agattccgag agtttagacg gctgtacctt
      661 gtttatccac agctaagaga agaaatattg caatatataa tgactggaaa tgaaattcgg
      721 cacacgctgt ccgccgaatt caccgaacca attcggcact caatgtgtgc cgaattacaa
      781 gcatcagaat tacaacataa taagtggagt attcctgctg aaaggttgtt caataaatta
      841 ccttattctc atttaaaatt catatccaaa atcgaaaatc cgacaaagcg tgctttctat
      901 gaaatggaag caatacgtgg ctgttggtct gcaagagaac tggaacggca aatatcatct
      961 ttgtattatg aacgtagtgg actctccaaa aacaaagaag ccctctccgc tttagtccag
     1021 caacaagtga ccttattaca gcctaaagat gttatcaaca cccctatttc tttagagttc
     1081 ttaggattaa acgagtgtgc attagtaaca gaaaacgatt tggaacaatc cattcttgac
     1141 aacctacaac gcttcttgtt ggaaatggga catggtttct gctttgaagc ccggcaaaaa
     1201 cgcatcttga ttgatgaaga ttactatttt gccgacctcg tattctatca ccgcatcttg
     1261 aagtgccacg ttattgtgga attaaagata gacaagttcc gctatgagta tgcttcacaa
     1321 ctcaatatgt atctgaacta tttcaaggcg gaagtgatgc agccagatga taatccgcct
     1381 atcggaattc tgctttgcac tgaaaaggga gatacattag taaagtatgc cactgccgga
     1441 ttagacccga acatcttcgt acaaaaatac atgatagagc ttccaagtga ggaagaaata
     1501 aaagcattca tagcttcctc aaattactaa cctatcatcc cccaataata ctggcgaaaa
     1561 aagaatactg tttttctttt cgccagtaca tatataatag atataagtcc gtttttggat
     1621 gtataaagaa acaaactaaa cttatcaaga aacgttttat ttttgcaata atgaaaactt
     1681 ttaatctgta tatggaaagt tccgaacttt ctttattaaa acaatttatc attaagaacg
     1741 gaacaatgaa gtcattcaag aaaaaagaac ctttcataac agagggaaat aaatccactt
     1801 atgtggggtt cgttaaaagc ggtttattcc gttatgtcaa gctggataat agaggaactg
     1861 aacatatcat tgggtttgct tttcaaaatg aatatatagc agaataccat tcctatatat
     1921 gcaaaattcc gtcattgctt acaatagaag ctgcaacgaa tagcgttgcc tatgttatat
     1981 ctttagaaac attacatgct ttttgggaaa cagacataca aacgctacgg ttgagaagca
     2041 tagttgcaga gaaactctat gctcaatttt atgagcgagt gatttccctc cactgtgata
     2101 cagccgaaga acgatatcta aaacttatcc aacagtatcc cgaagtaaca aataaactat
     2161 cactgaaaga tatagcatct tatctttcgg ttaccccgga aacagtcagc cacatacgca
     2221 aaaaaataac gacctcacga atttcttgag atacttcaag gattttgttt ttattatatg
     2281 ttattttgca ccgcttataa aaaaatgaaa tagcgatgca aaaaagacaa tcagacagag
     2341 caatgtattt taaagaactt gccgcaacga gtagaaaata ctacattcca tatatccaaa
     2401 catataaagc gataaaaaca ggaatgaata tactggaaat aggatgtggc gatggcggca
     2461 acttgctgcc tttttcagaa atggggtgta acacaactgg gattgatata gctgaaagcc
     2521 gaataaaaga cgcaaaacgt tttttcaagg aagttaatgc aaaaggaatg ttcatcgcat
     2581 ccgatgtgtt taaaatcaat gatttagaaa actgttttga catagttatc tgccacgatg
     2641 tattggaaca tattgacaat aaagagcgat tccttattga tttgaaaaaa tttctatcca
     2701 aagatggaat tatatttatg tcttttcctg catggcaaat gccttttgga ggacatcagc
     2761 aaatttgtaa aagttggtta gcttcacact tgccattcat ccatttactg cctaaactgc
     2821 tttatgtagg tttgctccgg ttatgccatg aaaaacaaga aacgataaat gagttactaa
     2881 gcataaaaca tactcaatgt tccattgaat catttagaaa aatagcttta ggagaataca
     2941 agattatcaa tcaacaattt tatttcatca atcctcatta cgagattaag ttcggtataa
     3001 aaccacgtaa actatcacct attataagtt caattccctt tatccgtaat tattttacaa
     3061 catcattctt ttgcatctta aaaatttaac aagaaaaaaa tattgtgcag agatatagaa
     3121 tacctaaata cacaacatcg atatgcttaa gattgtagaa acatgtaaat gagtagcgtg
     3181 aacctaagtt tttcaatcca tatgtccaaa caggttgtag taggtagtcc catgaaattg
     3241 tggaaagtga ttataggcaa gtgaaaatga gctctgcata gattgtgtag atttgcaatc
     3301 gggatttatc aaggctaaga aatatatcga cagagaaaag ttgttaagta catctgtagg
     3361 gaaacgaata gaattaagca tatttgttaa acccgttaag gatgacaaat ctgctatatc
     3421 tttgacaatc tatactgtat ctttagataa gaatcctgca tatcatcagg aaggaatctg
     3481 taaagatgat aaactataca aaactattat tcagggtata aaatcgacaa acatcaggag
     3541 aactgaatca gaagaatgaa tggaaaattt atattgggtt tactttgctt aaactattct
     3601 tcttaatttg cgtgttgatt gtccaaaagt caaaacacat cacattacgc aatgttcgag
     3661 aaagaacact gtacaaagca aaaaatgaat ttgaaaaaag ccgaagcggt gaacatcgtt
     3721 catcactcca gctttacttc gtttatggtt tacccaactt atcggcttct ttctttagct
     3781 gttcggcttg ctcgttcaac agccttgcac gttccaatgc ttccgcctgt ttcttgctgc
     3841 gatattcaaa atctatcaca gaatcggtca gaatttgaat gaaatcatta tccctctgcc
     3901 agttgaattt ggtttccagt atatcaagga cttctccgtt tgcccaaccc tgcatcagca
     3961 aataacggta tttcatatca ttgtcctgta actgctgcat ccgtgtagcc aaatggatat
     4021 ttaaccatat ggaagcggaa cagagaacca gcactgccca aaaaataaac aatcccggac
     4081 gaatccaaga agtaaccttg ttggaaaata taaagtcgat tgacccatta ttatactctt
     4141 aattgaccca tcaaaatatc ttagaattaa gtagagaaaa atgcatttta acccgggtca
     4201 gtttcaatta taattcttta cagtagatac tacttctttt tagcattaat ctttcttaca
     4261 gaatctcccg ttagttcaat tttgtgtgca gtatgtacaa ttctgtccag gattgcatca
     4321 gctacagtag gatctccaat tgcatcatac cagctttcaa ctggaagttg tgatgttatt
     4381 atgattgatt ttagtccgtg tctg
//
