LOCUS       NZ_OY725967             5947 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 65, complete sequence.
ACCESSION   NZ_OY725967
VERSION     NZ_OY725967.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725967.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5947
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="65"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            463..1494
                     /locus_tag="UHF62_RS17860"
                     /old_locus_tag="BFTSDC17_03691"
     CDS             463..1494
                     /locus_tag="UHF62_RS17860"
                     /old_locus_tag="BFTSDC17_03691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675757.1"
                     /GO_function="GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0006270 - DNA replication initiation
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_008675757.1"
                     /translation="MKKKLPITKNKDVVVSWVYTWSKQQDMSIHEQRIVLRILEACQAE
                     LKGVKLKDYAGTKRKFEHGLWDVDAQMHVSDVIFSGRDYNEIIAALDSLAGRFFTYEDD
                     EEWWKCGFISNPKYKKHTGIITFRVSNDLWDVFTKFAKGYREFELNKALALPTGYSLRF
                     YMLMSGQVYPLDISLDNLKERLGIPADKYKDKNGKDRIDNFEERVLKPAKAALDESCPY
                     TFNYVKVRENPNNKRSKVTGFRFYPVYQPQFRDEELEVKELQAKVTARHQIDSHVYEYL
                     RYSCGFTSEEINRNKETFITAQENITDLIRELAILNGKSREKNNPKGWIINALKGKIKE
                     YSA"
                     /name="replication initiation protein"
     gene            1547..2710
                     /locus_tag="UHF62_RS17865"
                     /old_locus_tag="BFTSDC17_03692"
     CDS             1547..2710
                     /locus_tag="UHF62_RS17865"
                     /old_locus_tag="BFTSDC17_03692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_154275601.1"
                     /translation="MKKFYYVILSMIAIALVSCTSELDEINNTVHQQETLSGNELGANL
                     MKSFQNAVSRSSEIKHLSYPSYYGGAYLNKEGKLVVKVVNKTSEEIEKDLITRCGGNGS
                     IVDICEYSYSELLNAAEKMDNYLLSKKNADNPFEFYGFSICDTDNNIEVYLGDISESNI
                     QDFKKEVLEEPFLKFVKSEKPAFLSEILTGQSIVSGTRSYGSVGFRAKRKDSHVVPVTG
                     FVTAGHVVQKAGTYVYENESMSTPIGCAEISQTSGDTDAAFCYSMNGYTFSNHLYSDFL
                     SVNPKLSSYLVNSKVAIRGRHSASTGYINSTYATSTFKWPSQGISVTLTGIVKMTCNSQ
                     SGDSGCIVYTPDDMNIAGTLIGGVTNSNPSYFMPASRTVEKYGLELY"
                     /name="hypothetical protein"
     gene            2691..3197
                     /locus_tag="UHF62_RS17870"
                     /old_locus_tag="BFTSDC17_03693"
     CDS             2691..3197
                     /locus_tag="UHF62_RS17870"
                     /old_locus_tag="BFTSDC17_03693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_008675760.1"
                     /translation="MVWNCIRIISFAVFIISCSNKKNSNYIDTLTVNEVISNWKNSIKE
                     KGEPPYLGGMYVENGIVYFCITNDTYNIRNDIFERCKSSNGVIIKMCGNSKESLMQQIK
                     ILDSLLLEKDFTKLKYYGHYLDERRNKVVIMLGDTSTSNIASFRKSVIDSPNLIFEKSE
                     EMFFE"
                     /name="hypothetical protein"
     gene            complement(3333..3785)
                     /gene="mbpC"
                     /locus_tag="UHF62_RS17875"
                     /old_locus_tag="BFTSDC17_03694"
     CDS             complement(3333..3785)
                     /gene="mbpC"
                     /locus_tag="UHF62_RS17875"
                     /old_locus_tag="BFTSDC17_03694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpC"
                     /protein_id="WP_008675763.1"
                     /translation="METPSNPKTEDYTYKQGQYSPRKRKDTTPKVNPQLAVELVFQELK
                     RVESYTKRIEDATAKKVEVDRGSLESAENRLKSVLAEFERLGNRMKNGGYVDKRVSFYS
                     ILCAVISLLFACLMCYLWVDAAKERDRYQPFYEYYQQMQEQKEGKE"
                     /name="mbpC"
     gene            complement(3742..4536)
                     /gene="mbpB"
                     /locus_tag="UHF62_RS17880"
                     /old_locus_tag="BFTSDC17_03695"
     CDS             complement(3742..4536)
                     /gene="mbpB"
                     /locus_tag="UHF62_RS17880"
                     /old_locus_tag="BFTSDC17_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008675765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpB"
                     /protein_id="WP_008675765.1"
                     /translation="MIAKGKSISHGTAALEYDLAKEINGEAAATEIHRHELFGCTGEEM
                     VQEMKPYFVDFPNVKNNCLRFEVSPSVEESAGMTDADWAKLGNDFMQRMGLMNHQYIIV
                     KHSGTEKNRRQAHLHILANRVSLSGELYKDNWIGKRATEAANGIARERNLVQSKDIGKA
                     NREEIKQAMDGILARMQGFDLAGFSRELEKLGFRVREARASTGKLNGYYVTSRSGTEYK
                     ASEIGKGYTLAHIEKTQKNLKYNSISRNYGNTLKPKDGGLHL"
                     /name="mbpB"
     gene            complement(4533..4832)
                     /gene="mbpA"
                     /locus_tag="UHF62_RS17885"
                     /old_locus_tag="BFTSDC17_03696"
     CDS             complement(4533..4832)
                     /gene="mbpA"
                     /locus_tag="UHF62_RS17885"
                     /old_locus_tag="BFTSDC17_03696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein MbpA"
                     /protein_id="WP_005783246.1"
                     /translation="MEVNRTEKITFRCTALEKAALAEQAARCGISTSEYCRTLALGGRP
                     KERYTEEERELFREIARLKGTLQRLNNYFGGRQYREVFEENQALINELKKILSR"
                     /name="mbpA"
     gene            complement(5138..5320)
                     /locus_tag="UHF62_RS17890"
                     /old_locus_tag="BFTSDC17_03697"
     CDS             complement(5138..5320)
                     /locus_tag="UHF62_RS17890"
                     /old_locus_tag="BFTSDC17_03697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008671561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_008671561.1"
                     /translation="MAVINLTSEEFANRIEEMLDLASKGDNVLIHHEGKTYTVIPISDE
                     ELENLTAKEKVLLNK"
                     /name="hypothetical protein"
     gene            complement(5350..5619)
                     /locus_tag="UHF62_RS17895"
                     /old_locus_tag="BFTSDC17_03698"
     CDS             complement(5350..5619)
                     /locus_tag="UHF62_RS17895"
                     /old_locus_tag="BFTSDC17_03698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008671563.1"
                     /GO_process="GO:0008219 - cell death [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Txe/YoeB family addiction module toxin"
                     /protein_id="WP_008671563.1"
                     /translation="MYEIEFSKEAAKHVLLLRKSSPQLFKKLERLLDELKEHPYTGTGH
                     PEQLKYLQGVWSRQLDKKNRIRYTVNETTIVVFVISVWGHYDDK"
                     /name="Txe/YoeB family addiction module toxin"
     gene            complement(5612..5878)
                     /locus_tag="UHF62_RS17900"
                     /old_locus_tag="BFTSDC17_03699"
     CDS             complement(5612..5878)
                     /locus_tag="UHF62_RS17900"
                     /old_locus_tag="BFTSDC17_03699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008671564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="WP_008671564.1"
                     /translation="MQIITTREFRANQKKYFELAEKETIFVSRRNAAPIVVYAATEEDF
                     PSREELEAIQRGIEDIKQGRTFKMRKDESLDDFLNRIEDECNV"
                     /name="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
     Typing          complement(3746..4536)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.455"
                     /coverage="100.0"
                     /evalue="6.729999999999999e-171"
ORIGIN
        1 ccagttcaaa atatttcttc tgattggcac gaaattcacg cgttgtaatt atctgcataa
       61 tatttatata tttgatttac accgcaaata tagctataaa agttcaacct ccaaactatt
      121 tgtgtaccta tttgtgtaca cgccattaaa agccatattc aagcctaccg cccgttggtt
      181 ggtgttgctt tgctttttcc cctcttttcg agttgatttt cagccttttt ccctctaaat
      241 tccccttgtc tgttataagc atcgtctgta atatgctcta tcacttttgc ggaaacaccg
      301 ataaataaag ggattaaaac atgcgtttcc ctacactttg ggagttttaa tcctacactt
      361 tgggagtttt taagacgaac tttccctaca ctttgggagt ttcacccttc tttttttgtt
      421 tatatgtagg tattttatat ctttgcagca aatcaaatag ttatgaaaaa gaagctacct
      481 attaccaaaa ataaagacgt agttgtatca tgggtatata catggtccaa acagcaagac
      541 atgtccatac acgaacaaag aatagttctt cgcatactgg aagcctgcca ggctgaacta
      601 aagggagtaa agctgaaaga ttatgcaggc acgaaacgca aatttgagca tggactttgg
      661 gatgttgatg cgcaaatgca tgtgtctgac gttatttttt ccggacgtga ctacaacgaa
      721 atcatagctg cactcgattc actggctgga cgttttttca cttacgaaga tgatgaggaa
      781 tggtggaaat gtggatttat atctaacccg aaatacaaaa agcataccgg tattataaca
      841 tttcgtgtat ctaatgacct ttgggacgtg tttaccaaat tcgcaaaagg atatagggaa
      901 tttgaactaa acaaggctct tgcgctgcct acaggctatt cacttaggtt ttatatgctc
      961 atgagtgggc aggtgtaccc tttggatata tcactggaca acttaaaaga acgacttggc
     1021 atacctgcgg acaaatacaa agacaaaaac ggaaaagata gaatcgacaa cttcgaggaa
     1081 agagtattaa aaccagcaaa ggctgcgctt gatgaaagct gcccatacac attcaactac
     1141 gtaaaagtgc gtgaaaaccc taacaacaaa cgtagtaaag taactggatt tagattttac
     1201 cctgtatatc aacctcaatt cagggatgaa gaactggaag taaaagaact tcaagcaaaa
     1261 gtaacggcac gtcaccaaat agatagccat gtgtatgaat acctccgtta ttcctgcggt
     1321 ttcacttcag aagaaataaa ccggaacaag gaaacattta taactgcaca agaaaatatt
     1381 actgacctta taagagaact ggctatccta aacggaaaat cacgagaaaa gaataatcca
     1441 aaaggttgga ttatcaatgc actaaagggg aaaataaagg agtatagtgc ttgattttca
     1501 aaaggaattg ctatatttgt ggatattaac tttaaattat accattatga aaaagtttta
     1561 ttatgttatt ttaagcatga tagcaatagc tttagtatca tgcacgtctg aattagacga
     1621 gataaataac actgttcatc agcaagaaac cttatccgga aatgaacttg gtgctaatct
     1681 aatgaaatct tttcaaaatg cagtatctcg aagtagtgag ataaagcatt tatcatatcc
     1741 ttcatattat ggaggagcct atttaaacaa agaaggcaaa ctggttgtaa aggtagtcaa
     1801 taaaacttcg gaagagatag aaaaagattt aatcactcga tgtggtggaa atggatccat
     1861 tgtggatatc tgtgaatatt cttattcaga actattaaat gcagcagaaa agatggataa
     1921 ctatttgtta tctaaaaaga atgcagataa tccttttgaa ttttatggtt tttctatctg
     1981 cgatacagac aacaacatag aagtctattt aggtgacatt tcagaatcaa atatacaaga
     2041 cttcaaaaaa gaagttttag aagaaccctt cttgaagttt gtgaaatcag aaaaaccagc
     2101 tttcctaagc gaaatactaa cagggcaaag tattgtttcc ggaacacgtt catatggttc
     2161 tgtcggattc cgagctaagc gaaaagatag tcatgttgta cctgttacag gatttgttac
     2221 cgcaggacac gttgtacaaa aagctggaac ttatgtatac gaaaatgaat cgatgagtac
     2281 tcctataggt tgtgctgaaa tttcacaaac gtcaggagat acggatgctg ccttttgtta
     2341 ttcaatgaat ggatatacat tttcaaatca tttatatagc gattttttat ctgttaatcc
     2401 aaaactatct tcttatttag ttaattcaaa agtcgcaatt cgtggtaggc atagcgcaag
     2461 tactggttat attaactcca cttatgcaac atccactttt aaatggccct ctcaaggcat
     2521 atcagttact ttaactggca tagtaaaaat gacctgtaat tcacaaagcg gagatagcgg
     2581 atgcattgtt tacactcctg atgatatgaa tatagccgga acattaatag gaggtgtcac
     2641 aaattccaat ccttcatatt ttatgcctgc ttctcgtacc gtggaaaaat atggtttgga
     2701 attgtattag aattataagc tttgctgttt tcattatatc ctgttcgaat aaaaaaaaca
     2761 gtaattatat agacacgtta actgtaaatg aagtaatttc caattggaag aattctatta
     2821 aagagaaagg agaaccacct tatttaggag gtatgtatgt ggaaaatgga attgtctact
     2881 tttgtattac aaacgacaca tacaatatac ggaatgatat ttttgaaaga tgtaaaagtt
     2941 ccaatggagt aattataaaa atgtgtggaa acagtaaaga gtccttaatg cagcaaataa
     3001 agattttaga ctccttatta cttgaaaaag attttacaaa attaaagtat tatggtcact
     3061 atttagatga aagaaggaat aaagtagtca taatgttggg cgacacatct acaagtaata
     3121 ttgcctcctt tagaaaaagt gttatagact ctcccaattt aatttttgag aaatcagaag
     3181 aaatgttttt tgaataaaga gcaagccgcc ggaactccat agattcccgg cggcttttat
     3241 atataggaat ggcatcagtg ccatttaaga gtttgcaaag aattactatc tttgcaaata
     3301 tttggttttc tacccattta actcgtacat ttctattcct tcccttcttt ctgctcttgc
     3361 atctgctggt aatattcata aaagggctgg tatctgtccc gttccttggc agcatccacc
     3421 cacaaataac acatgaggca ggcaaacaag agggagataa cggcacaaag aatggagtag
     3481 aacgaaaccc gtttatccac atagccgcca tttttcattc tgttccccag ccgttcaaat
     3541 tccgccaata cgctttttag gcgattttcg gcactttcaa ggcttcctct atctacttct
     3601 acctttttgg ctgttgcgtc ctctatgcgc ttcgtatagg attctacgcg cttcaactct
     3661 tgaaacacca gctctaccgc aagttgcgga tttactttgg gcgtggtgtc ctttctcttt
     3721 cgggggctgt actgtccctg cttataggtg taatcctccg tctttgggtt tgagggtgtt
     3781 tccataattc ctgctgattg agttatactt taagtttttc tgtgtctttt cgatgtgggc
     3841 aagcgtatag cctttcccta tctcgcttgc cttgtattcc gttccgctcc ggctcgttac
     3901 atagtagccg ttaagtttgc cggtactcgc acgggcttcc cttaccctga agcccagttt
     3961 ttcgagttcc cggctgaatc cggcaaggtc aaatccctgc atccttgcaa ggataccgtc
     4021 catagcctgt tttatctctt ccctgttggc tttgcctatg tcctttgact gtaccaagtt
     4081 ccgctctctg gctataccgt tggcggcttc cgttgctctc ttccctatcc agttgtcttt
     4141 gtagagttct cccgataacg acacacggtt tgccagtata tgcaggtggg cttgcctgcg
     4201 gttcttctcc gttccgctgt gcttcacaat gatgtactgg tggttcatca agcccatgcg
     4261 ctgcatgaaa tcgttgccga gcttcgccca gtccgcatcg gtcatgcctg cactttcttc
     4321 cactgaaggg ctgacctcaa accgaaggca gttgttcttt acgttcggaa aatcaacaaa
     4381 gtaaggtttc atctcctgca ccatctcttc acctgtacag ccgaaaagct catggcggtg
     4441 tatctcggtg gctgctgcct ccccgtttat ctctttggca agatcgtact ccagtgctgc
     4501 cgtgccatga gatatgctct ttccttttgc tatcatcgtg aaagtatctt tttaagttca
     4561 ttgattagtg cctggttctc ttcgaacact tccctgtact ggcgcccacc gaaatagttg
     4621 ttcagacgct ggagtgttcc tttcagtcgg gctatctccc gaaacagttc cctttcttct
     4681 tccgtgtacc tctctttggg gcgtccgccc agtgcgagtg tacggcagta ctccgatgta
     4741 ctgatgccgc atcgggctgc ctgttccgca agtgccgcct tttcaagtgc cgtgcagcgg
     4801 aatgttatct tctccgttcg atttacttcc atgtcgcaaa ggtaatctta aaatcctttt
     4861 gagcaaagcg agaaaggcaa gaatgtccga caaggacact tcttgctata tatacacatg
     4921 ccgcatggga atacacacaa cgctgacacg ctgcataggc acacattttt ttctcttttt
     4981 cctgcctttt tcacaacgga atacggagaa ctgtcaaggg gacgggctgg aaaaaccgca
     5041 cgagcctgcg agcgcaggat ttttccggat ccggacttgc gaagcccttg acggttacgg
     5101 agtatggagt tacatttgca gacaaaaaag agaaaaatta cttattcagt aatacttttt
     5161 ctttcgcggt taagttctcc aattcttcat cacttatagg aataacagta taggttttcc
     5221 cctcgtgatg aataagtaca ttgtcgcctt tactcgccaa atcaagcatt tcctctattc
     5281 ggttagcaaa ttcctcggat gtaagattta taactgccat atctttaatt tttacattgt
     5341 ttttttacgt catttatcgt catagtgccc ccaaacagaa ataacaaaaa caacaatggt
     5401 ggtttcgttc accgtatatc taatacggtt tttcttatca agttgccttg accatacacc
     5461 ctgcaaatac ttcaactgtt cggggtgtcc agtcccggtg tatggatgtt ctttcagctc
     5521 atccaatagc ctctctaact ttttgaagag ttgcggagag gactttctta gcaacagtac
     5581 atgttttgca gcttcttttg aaaattctat ctcatacatt gcactcatcc tctatacggt
     5641 tcaaaaaatc atctaatgat tcatccttcc gcattttaaa agttcgtccc tgcttaatat
     5701 cctcaatacc cctctgaata gcctccaatt cttcccttga ggggaaatcc tcttccgtag
     5761 ccgcatatac gactatgggg gcggcattac gacgggaaac aaagattgtc tctttttcag
     5821 ccagttcaaa atatttcttc tgattggcac gaaattcacg cgttgtaatt atctgcataa
     5881 tatttatata tttgatttac accgcaaata tagctataaa agttcaacct ccaaactatt
     5941 tgtgtac
//
