LOCUS       NZ_OY725966             6653 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 64, complete sequence.
ACCESSION   NZ_OY725966
VERSION     NZ_OY725966.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725966.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..6653
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="64"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            join(6333..6653,1..>15)
                     /locus_tag="UHF62_RS17830"
                     /pseudo=""
     CDS             join(6333..6653,1..>15)
                     /locus_tag="UHF62_RS17830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008018700.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="ISAs1 family transposase"
                     /name="ISAs1 family transposase"
     gene            complement(128..1927)
                     /gene="typA"
                     /locus_tag="UHF62_RS17835"
                     /old_locus_tag="BFTSDC17_03684"
     CDS             complement(128..1927)
                     /gene="typA"
                     /locus_tag="UHF62_RS17835"
                     /old_locus_tag="BFTSDC17_03684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018669465.1"
                     /GO_function="GO:0005525 - GTP binding [Evidence IEA]"
                     /GO_process="GO:0006950 - response to stress [Evidence
                     IEA]; GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="WP_007755649.1"
                     /translation="MQNIRNIAIIAHVDHGKTTLVDKMLLAGNLFRNNQNSGELILDNN
                     DLERERGITILSKNVSINYNGTKINIIDTPGHSDFGGEVERVLNMADGCILLVDAFEGP
                     MPQTRFVLQKALEIGLKPIVVVNKVDKPNCRPEEVYEMVFDLMFSLNATEDQLDFPVIY
                     GSAKNNWMSTDWQKPTDTITPLLDCIVENIPAPQQLEGTPQMLITSLDYSSYTGRIAVG
                     RVHRGTLKEGMNVTLVKRNGDMFKTKIKELHVFEGLGRVKTTEVSSGDICALVGIDGFE
                     IGDTVCDFENPEALPPIAIDEPTMSMLFTINDSPFFGKDGKFVTSRHIHDRLMKELDKN
                     LALRVKKSEEDGKWIVSGRGVLHLSVLIETMRREGYELQVGQPQVIFKEIDGVKCEPIE
                     ELTINVPEEYSSKIIDMVTRRKGEMVKMENTGERINLEFDMPSRGIIGLRTNVLTASAG
                     EAIMAHRFKEYQPFKGEIERRTNGSMIAMESGTAFAYAIDKLQDRGKFFIFPQDEVYAG
                     QVVGEHSHDNDLVINVTKSKKLTNMRASGSDEKARLIPPVQFSLEEALEYIKEDEYVEV
                     TPKAMRMRKVILDEIERKRANKS"
                     /name="typA"
     gene            2084..2353
                     /gene="rpsO"
                     /locus_tag="UHF62_RS17840"
                     /old_locus_tag="BFTSDC17_03685"
     CDS             2084..2353
                     /gene="rpsO"
                     /locus_tag="UHF62_RS17840"
                     /old_locus_tag="BFTSDC17_03685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007763600.1"
                     /GO_component="GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA]; GO:0000314 - organellar small
                     ribosomal subunit [Evidence IEA]"
                     /GO_function="GO:0003735 - structural constituent of
                     ribosome [Evidence IEA]"
                     /GO_process="GO:0006412 - translation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="WP_007763600.1"
                     /translation="MYLDAAKKQEIFGKYGKSNTDTGSSEAQIALFSYRISHLTEHMKL
                     NRKDYSTERALTMLVGKRRRLLDYLKAKDIERYRAIVKELGLRK"
                     /name="rpsO"
     gene            2534..3109
                     /locus_tag="UHF62_RS17845"
                     /old_locus_tag="BFTSDC17_03686"
     CDS             2534..3109
                     /locus_tag="UHF62_RS17845"
                     /old_locus_tag="BFTSDC17_03686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009132431.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0003700 - DNA-binding transcription factor activity
                     [Evidence IEA]"
                     /GO_process="GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="WP_007755644.1"
                     /translation="MDTSKIVGEKIKALREDKTITIEELAQRSGLAIEQIERIENNIDI
                     PSLAPLIKIARVLGVRLGTFLDDQDEVGPVVCRKKEAKDAISFSNNAIHSRKHMEYHSL
                     SKSKADRHMEPFIIDVMPTEDTDFVLSSHEGEEFIMVMEGIMEISYGKNTYLLEEGDSI
                     YYDSIVPHHVHAYEGQAAKILAVIYTPI"
                     /name="XRE family transcriptional regulator"
     gene            3149..4798
                     /locus_tag="UHF62_RS17850"
                     /old_locus_tag="BFTSDC17_03687"
     CDS             3149..4798
                     /locus_tag="UHF62_RS17850"
                     /old_locus_tag="BFTSDC17_03687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011108477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="WP_022276184.1"
                     /translation="MQLFDRTLGQWLEHWAEETPDKEYIVYSDRNLRFTWSQFNHRVDD
                     MAKGLISIGVERGTHVGIWAANVPDWLTLLYACAKIGAVYVTVNTNYKQSELEYLCQNS
                     DMHTLCIVNGEKDSDFVQMTYTMLPELKTCERGHLKSERFPYMKNVVYVGQEKHRGMYN
                     TAEILLLGENVEDDRLNELKSKVDCHDVVNMQYTSGTTGFPKGVMLTHYNITNNGFLTG
                     EHMKFTADDKLCCCVPLFHCFGVVLATMNCLTHGCTQVMVERFDPLVVLASIHKERCTA
                     LYGVPTMFIAELHHPMFDLFDMSCLRTGIMAGSLCPVELMKQVEEKMYMKVTSVYGLTE
                     AAPGMTATRIDDSFDVRCNTVGRDFEFTEVKVIDPETGEECPVGVQGEMCNRGYNTMKG
                     YYKNPEATAEVIDENNFLHSGDLGIKDEDGNYRITGRIKDMIIRGGENIYPREIEEFLY
                     KLDGVKDVQVAGVPSKKYGEAVGAFIILKEGVTMQEEDVRDFCRNKISRYKIPKYIFFV
                     DEFPMTGSGKIQKFRLKDLGLKLCKEKGIEII"
                     /name="AMP-binding protein"
     gene            complement(4901..5760)
                     /locus_tag="UHF62_RS17855"
                     /pseudo=""
     CDS             complement(4901..5760)
                     /locus_tag="UHF62_RS17855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008022951.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="Rpn family recombination-promoting
                     nuclease/putative transposase"
                     /name="Rpn family recombination-promoting nuclease/putative
                     transposase"
ORIGIN
        1 aacaatattc tacaaaaaag atagaagact gggagagttg aacgaaaaaa tcaagagaaa
       61 agctttgctt tacgtgagct tttctcttga ttttttagaa agaggaacat ttactgaata
      121 tccctaatta gctcttattt gcacgtttgc gttctatctc gtctagaatt actttacgca
      181 tacgcattgc tttcggagta acttctacat attcatcctc cttgatatat tccaatgctt
      241 cttcaagaga gaattgaacg ggaggaatca aacgtgcctt ttcatcggaa ccggaagcac
      301 gcatattcgt caacttcttc gatttggtaa cgttgataac taggtcattg tcgtgagaat
      361 gttcgcctac cacttgtccg gcatacactt cgtcttgcgg gaatatgaag aacttgccgc
      421 gatcctgcaa tttgtcgatt gcataagcaa aagctgttcc gctttccata gcgatcatgg
      481 aaccgttggt acggcgttct atctctcctt tgaatggctg atattctttg aaacggtgag
      541 ccataatcgc ttcaccggca gaagcagtca atacattcgt tcgcaagccg ataataccgc
      601 gtgagggcat gtcaaactca agattgatac gttcgccggt attttccatc ttgaccatct
      661 cacccttacg gcgtgtcacc atatcaatga tcttgcttga atactcttcc ggtacgttga
      721 tagtcaattc ttcaatcggt tcacatttga caccatcaat ctctttgaaa ataacttgcg
      781 gctgccccac ttggagttca tatccctcgc ggcgcatcgt ctcgatcagt acggaaaggt
      841 gaagtacacc acgtccggaa acgatccatt taccatcttc ctcacttttc tttacgcgaa
      901 gagccaagtt tttatctagt tctttcatca agcggtcgtg gatatgacgt gaagtcacaa
      961 acttaccgtc tttgccgaag aacggagaat cgttaatggt gaacaacata ctcatggtcg
     1021 gttcatcaat agcgattggc ggcaaagctt ccggattttc gaagtcgcaa acagtatctc
     1081 cgatctcaaa tccgtcgata cctaccaatg cgcaaatatc tcccgatgag acttctgtcg
     1141 ttttcacacg gcccagacct tcgaaaacat gaagctcctt aattttagtc ttgaacatat
     1201 cgccattgcg ttttacaagc gttacgttca taccttcttt taaagtaccg cgatgtacac
     1261 ggcctacggc aatacggccg gtataggaag aataatccaa agaagtaatc aacatctgcg
     1321 gagtaccttc caactgttgt ggagccggaa tgttttcaac gatacaatcc agcagaggag
     1381 tgattgtatc ggttggcttt tgccagtcgg tactcatcca gttgtttttg gcagaaccat
     1441 agataacggg gaaatccaac tggtcttccg tcgcattaag actgaacatc aagtcgaata
     1501 ccatttcgta aacctcttcc ggacgacaat taggcttatc caccttattg actacgacaa
     1561 tgggtttcaa accgatttcc aatgcttttt gcagtacgaa acgggtttga ggcatgggac
     1621 cttcaaaggc gtctaccaac agaatacagc catcggccat attcaacaca cgttctactt
     1681 caccaccgaa gtcactatgt cccggagtat caataatatt aattttggta ccgttgtagt
     1741 tgatggaaac gtttttagaa agaatcgtta taccacgttc acgttccaga tcgttgttgt
     1801 ccagtataag ttcaccacta ttttggttgt tgcggaacaa gtttcccgcc aatagcatct
     1861 tgtcaaccag cgttgttttc ccatggtcta catgggcaat gattgcaatg tttcgaatat
     1921 tttgcatata atacctatta tttggctgca aaggtacgaa aataggatta gaaatatgtg
     1981 caatgatagc aattttttct tgtaaaacgt tgtgggatat aaagataata cctatctttg
     2041 cacgctcaaa agaataattt actatattaa aattctaaaa gttatgtatt tagacgctgc
     2101 taaaaagcaa gaaatcttcg gaaagtacgg aaagtctaac actgatactg gctcatctga
     2161 ggcgcagata gctttgtttt cctaccgtat ttctcatctg actgagcaca tgaagctcaa
     2221 cagaaaagat tatagtacag agagagcttt gacaatgttg gtaggtaaac gtcgtcgttt
     2281 gcttgactac ctgaaagcaa aagatatcga aagatatcgt gcaattgtta aagaactcgg
     2341 tttgcgtaag taatttactt gctgcggaaa gattgaaaag ccgttccttg ttagggggaa
     2401 cggctttttt atttcttctt ttgggctgat gagcatattt tctcacttat aattgtgccc
     2461 atctaaagaa tttgctattt ttgcagttta attattataa attatcacct ttgatatcta
     2521 aaatgctttc aatatggata caagtaaaat tgtcggcgaa aaaattaaag ctctgcgaga
     2581 agataaaaca ataaccatag aagaactggc gcaacgttcc ggtctggcca ttgagcagat
     2641 tgaacgtatc gagaataata tcgatattcc ttctcttgca ccgctaatta agattgcgcg
     2701 cgtgctggga gtgcgtttgg gtactttcct tgacgaccaa gatgaagtcg gtccggtggt
     2761 atgccgtaag aaagaagcta aagatgcgat tagtttctct aataatgcga ttcattcccg
     2821 caagcatatg gaatatcatt ctttgtcgaa gtcgaaagcg gatcgccaca tggagccgtt
     2881 tattatcgac gtaatgccga ctgaggatac cgactttgtg ctgtcttctc atgagggaga
     2941 ggagtttatt atggtgatgg aaggtatcat ggaaatcagt tatggtaaaa atacctatct
     3001 gctggaagag ggagatagca tttattacga ttccattgtt cctcatcatg tgcatgccta
     3061 cgaggggcag gccgctaaga ttctggcagt gatttacact ccaatttagc gaaatacggt
     3121 aattactaat caattaatca ctaactacat gcaattattt gatcgtactt tgggccagtg
     3181 gctggaacac tgggctgaag agacccctga taaggaatat atcgtatatt ccgaccgcaa
     3241 tctccgtttc acttggagcc agttcaatca ccgtgtggat gatatggcga aaggacttat
     3301 ttctatcggc gtggaacggg gaacccatgt cggcatttgg gcggctaatg ttccggattg
     3361 gctgacgttg ctttatgctt gtgccaaaat cggtgcggta tatgttacgg taaatacgaa
     3421 ctataagcaa tccgagttag aatatctttg ccagaactcg gatatgcata ccctttgtat
     3481 tgtaaatggc gagaaggata gcgacttcgt acagatgact tataccatgc ttccggaatt
     3541 gaagacttgc gaacgcggtc atttgaagag cgagcgtttt ccgtatatga agaatgtagt
     3601 atatgtcggt caggagaaac atcgcggaat gtataatacg gcggagattc ttttgttggg
     3661 agagaatgtg gaagatgacc gtttgaatga gctcaaaagc aaggttgact gtcacgatgt
     3721 ggtcaatatg caatatacgt caggtactac cggattcccg aaaggagtga tgttgacaca
     3781 ttataatatt accaataacg gattcctgac cggcgaacac atgaaattta cggcagatga
     3841 caagctttgt tgttgcgtac cgttattcca ttgtttcgga gttgtgctgg ctactatgaa
     3901 ttgtctgact catggttgta cgcaagtaat ggtggagcgt ttcgacccgt tggtggtgtt
     3961 ggcttctatc cacaaggaac gttgtacggc tctttatgga gtacctacta tgtttattgc
     4021 cgaactacat cacccgatgt ttgacctctt tgatatgtcc tgtcttcgta ccggtattat
     4081 ggcgggttcg ttgtgtcctg tcgaattgat gaagcaggta gaagaaaaaa tgtatatgaa
     4141 ggtgaccagt gtatacggat tgacggaagc ggctcccggt atgacggcta cccgtataga
     4201 tgattcattt gatgtgcgct gtaatacggt agggcgtgat tttgagttta cggaagtgaa
     4261 ggtgattgat ccggagacag gtgaggaatg tccagttggt gtacagggtg agatgtgtaa
     4321 tcgtggatat aacaccatga agggatatta taagaatccg gaagctacgg cggaagttat
     4381 tgatgagaat aatttccttc attcgggcga cttgggcatt aaggatgaag atgggaatta
     4441 tcggattacc gggcgtatca aggatatgat tattcgtggt ggagagaaca tttatccacg
     4501 tgaaatcgaa gagtttcttt ataaacttga tggagtgaaa gatgtgcagg tagccggtgt
     4561 tccgtcaaag aaatacggag aggccgtcgg tgcatttatc attctgaaag aaggtgtgac
     4621 aatgcaggaa gaagatgtgc gtgacttctg cagaaataaa atctctcgtt ataaaatccc
     4681 caaatatatc ttctttgtgg atgaatttcc gatgacgggc agtggcaaga ttcagaaatt
     4741 cagactgaaa gatcttggtt tgaaactttg caaggagaag gggatagaga ttatttaaat
     4801 gaagaatgaa taattttact tttcttaggt ataaaaagag actgtcttct aataggcaaa
     4861 aagaagacag tcttacttta attatatgct tagaggtcat ttataacttc tgaatttctt
     4921 ccggtaataa tcctgtcgct ttttggattg tctctgtgtc caatcccatt gatttcagat
     4981 ttcgggctat ttctatacac ccttccattt ttccttccat gcgtccttct aattttactc
     5041 catccaacac gtcattttgt atcatgatgg cactcaggtg ttcgtcataa gcatagcgtt
     5101 ctgcaggaga catattataa taaatcagtt ttttacgagc ttccgtcaaa ccgggagcct
     5161 gagtgtcaga acggatacag ccggttttta ggtactcaat ccattcctct aaaggagtga
     5221 ctgctacttt attgaactcg tttacgcgga ttaggaagta ctctgggaaa atccctgcag
     5281 gaagtttatg gacgagagcg tccttttctt ttgttgttac ttcaagcgat ctccggtgtg
     5341 tactccagtg aagctattct gtccatgata taaataatca tttccttttc cgatgtcgaa
     5401 gtacagaatg ctaatggaat aaatcttttt cacttcgtag tagcgttcgc caagagaaat
     5461 gtgttctgtg attgctttgg cgacaccgta aaggatacgt tccaagtaat acaactcacg
     5521 cgtattttga atctctacta tgatgatttc gcctttgctg tttttggctt tgatatccac
     5581 gcgattgaac ttgtcatcta cgctttgctg attactttcg ctttccagca gttctatgat
     5641 tttcacttct tcacccaaaa ggaccgttaa gaatccctcg agtacgtcga aattcgcttt
     5701 ttgacggaga aggcatttta cggcccagtc aaaccgtata tatctgtcct gctgctccat
     5761 atcctatctt ttttgattat tgcaaagtta cgattttttt tcagacttta ttacttttcc
     5821 actcaaaaaa caaaatcctt attgctgtta tcctatactg catctgttta caggtttgga
     5881 tggcttatta taatgactgt tggctattga attaagcttc acctttcctt cataacgctt
     5941 tattcattgg tgttagcggg tgaaggacag gtccttcact tgtctttcag agattcttgt
     6001 tgtaaattgc tgtttttttc ttttgagatt attaaaggta ttttgtttgt ttttggcagt
     6061 cagctttcgt ttttcttggt caatcccaat ctttttattc tttgtgtttt acttatcaca
     6121 tatatgataa ttgtatgtca tatatgtgat aagtatttat cattattgag ataagttgtt
     6181 atcatagata tgatcagggc agacgcatta tattttttac tatattattc cttgttgttt
     6241 attttctata ttactgatta ttaatgtatt accatttgtt tctgtcgatt gtttttctta
     6301 tctttataag atatattaaa acataaacta acatgaaaat tggcataatt gacctttgta
     6361 aaccaataga agatcctagg atgaaccgta aaaaagtaca taaaatggaa accattatct
     6421 atatatccat tgctgctgta atctgtggcg cccaatcctg gaatgagatt gaggaatttg
     6481 gcaatgcgaa aattactttt ttcaaaagtc gcatacctga cctggggtcc atccccagtc
     6541 atgatacttt taatagattc ttcagtataa taaagcctga gtattttgag ttgatctttc
     6601 gtaattgggt aaaacaagtc tgccaggagg tgaaaggcgt tgtagctata gat
//
