LOCUS       NZ_OY725902              543 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 92, complete sequence.
ACCESSION   NZ_OY725902
VERSION     NZ_OY725902.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725902.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="92"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     misc_feature    complement(1..121)
                     /note="23S ribosomal RNA rRNA prediction is too short"
     gene            complement(283..356)
                     /locus_tag="UHF62_RS01130"
                     /old_locus_tag="BFTSDC17_03731"
     tRNA            complement(283..356)
                     /locus_tag="UHF62_RS01130"
                     /old_locus_tag="BFTSDC17_03731"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(320..322),aa:Ala,seq:tgc)
                     /name="tRNA-Ala"
     gene            complement(427..503)
                     /locus_tag="UHF62_RS01135"
                     /old_locus_tag="BFTSDC17_03732"
     tRNA            complement(427..503)
                     /locus_tag="UHF62_RS01135"
                     /old_locus_tag="BFTSDC17_03732"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(467..469),aa:Ile,seq:gat)
                     /name="tRNA-Ile"
ORIGIN
        1 ccattcggaa atcttcggat caaaggttat ttgcacctac ccgaagctta tcgcagctta
       61 tcacgtcctt catcgcctcc gagagccaag gcatccgcca tgcgcccttg cttactttct
      121 ttcaaacgtt ttattctcat attggtattg acttgggaat tgcttccggc tgtcaatatt
      181 gcatattcga acacgtacgg tttgatatat acttttagct cttactttta attttacttt
      241 ttgtacatca tgtcaaagat cgttttctct tttcagagag agtggagaat aacggattcg
      301 aaccgttgac cctctgcgtg caaggcagat gctctagcca gctgagctaa tcccccaaga
      361 ggttgttcaa gaatatcgtt ttttagcttt tagctttcag ctttcgctgt tcctcattct
      421 tgagcttggt agtcccaggc agagttgaac tgccgacctc tacattatca gtgtagcgct
      481 ctaaccaact gagctatagg actagttcaa ccttgtctac ctttcgtcta gactcggctt
      541 ctt
//
