LOCUS       NZ_OY725897              702 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 87, complete sequence.
ACCESSION   NZ_OY725897
VERSION     NZ_OY725897.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725897.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="87"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            1..597
                     /locus_tag="UHF62_RS00670"
                     /old_locus_tag="BFTSDC17_03728"
     CDS             1..597
                     /locus_tag="UHF62_RS00670"
                     /old_locus_tag="BFTSDC17_03728"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_process="GO:0006397 - mRNA processing [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="WP_320582539.1"
                     /translation="MELTNRNGKEIWKPKCKSGLIFNDDLEILDSYNREIVGFYNYYSI
                     ANNCAHALNNFKYIMEYSMYKTFAGKYKCRTRKVNKKYRKNGRFIVTHMTKTGVKERYF
                     YDGGFKRKKPTYKSECDIMPRTIYTAGRTSLVERLKARECELCGATDDLVMHHVRKLKN
                     LQGKESWERHMIARKRKTIAVCRSCHKKIHDGKID"
                     /name="group II intron reverse transcriptase/maturase"
ORIGIN
        1 ttggaactga caaaccgtaa cggaaaggaa atatggaaac cgaaatgtaa atcgggactg
       61 atattcaatg acgaccttga aatccttgat agttataatc gggaaatcgt ggggttctat
      121 aattactact ccatagccaa caactgcgcc catgccttga ataatttcaa gtacatcatg
      181 gaatacagca tgtacaaaac gtttgcaggc aaatataagt gccgaacacg taaggtaaac
      241 aagaaatatc gtaagaacgg taggtttatc gtaacgcaca tgactaaaac tggtgtaaag
      301 gaaagatact tttacgacgg tggcttcaaa cgaaagaagc ccacctataa atcggaatgt
      361 gacattatgc cacgaacaat ttatactgcg gggcggacaa gccttgttga aaggctgaaa
      421 gcccgtgagt gtgaattatg tggagcgaca gacgaccttg ttatgcacca tgtaaggaaa
      481 ctaaagaact tgcagggaaa ggaaagctgg gaacgacaca tgattgcccg taaacgcaag
      541 acgattgccg tgtgcaggag ttgtcacaag aagatacatg acggaaagat agactgaaat
      601 tagtggagag ccggatacgc tgagaggtgt aagtccggtt cgggggcgag catttggaaa
      661 cctaccatag aaatatgata aggcgctggg tgcttagcct ac
//
