LOCUS       NZ_OY725896              911 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 86, complete sequence.
ACCESSION   NZ_OY725896
VERSION     NZ_OY725896.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725896.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="86"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(join(25..911,1..7))
                     /locus_tag="UHF62_RS00665"
                     /old_locus_tag="BFTSDC17_03727"
     CDS             complement(join(25..911,1..7))
                     /locus_tag="UHF62_RS00665"
                     /old_locus_tag="BFTSDC17_03727"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="WP_320582538.1"
                     /translation="MLHLHWDQLVHAEDWLLFEKNIGAYICIDEVALSRGELYTVLTNK
                     EAHGGKGSMIAIIKGTDVHTVTSVLLKLSRRRRYQVRETTLDMAPNMEQIARICFPAAK
                     RVTDRFHVQKLAYEAVQEMRVKARWEALDEESTQIAYAKACGKMYHAPVFANGDTRKQL
                     LARSIYLLYKKESLWTQSQRIRAEILFKEYPDIKKGYYLSMRLGLIYHQCKFKDIALTR
                     LARWYDEVDKSGFLTFGRVARSIQTHYLDIINFFERRATNAAAESFNAKIKAFRAQFRG
                     VRDRAFFLYRLAKLYA"
                     /name="transposase"
ORIGIN
        1 gtaacaatct gagggattct atatttaagc atataattta gcaagtctat ataagaaaaa
       61 agctctatct cttactcctc tgaactgtgc tctaaatgct ttgattttag cattgaatga
      121 ctctgctgcg gcattggttg ccctcctttc aaagaaattg attatatcca gataatgtgt
      181 ttgtatagaa cgtgcgaccc ttccaaaggt gaggaacccc gatttatcta cttcatcata
      241 ccaccttgcc agccttgtca aagcaatatc cttaaactta cactgatgat agattaagcc
      301 taaccgcata gacagataat atcctttctt tatatcggga tattccttga aaagaatttc
      361 agcccgtatt ctttgagact gagtccataa ggattccttc ttgtaaagca aataaatact
      421 tctcgctaac aactgctttc ttgtatctcc attagcgaaa acaggtgcat gatacatctt
      481 tccacaggcc tttgcataag caatctgagt ggactcttca tccaaagcct cccagcgagc
      541 ttttacccgc atctcctgca cagcttcata agctaacttc tgtacgtgaa agcgatcggt
      601 aacacgtttg gccgcaggaa agcagatgcg tgcaatctgc tccatgttag gagccatatc
      661 caaggttgtc tcgcgcactt ggtaacggcg gcgacgggag agcttaagca ggacagaagt
      721 gaccgtatga acgtccgtac ctttaatgat ggcaatcata ctacctttac caccgtgagc
      781 ttctttattg gtcagtacag tatagagttc cccacgcgag agggctacct catcaataca
      841 gatataagca ccgatattct tttcgaatag tagccaatcc tctgcatgaa caagttggtc
      901 ccaatggaga t
//
