LOCUS       NZ_OY725894             1033 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 84, complete sequence.
ACCESSION   NZ_OY725894
VERSION     NZ_OY725894.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725894.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="84"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(join(994..1033,1..704))
                     /locus_tag="UHF62_RS00660"
     CDS             complement(join(994..1033,1..704))
                     /locus_tag="UHF62_RS00660"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="phage integrase SAM-like domain and Arm
                     DNA-binding domain-containing protein"
                     /protein_id="WP_320582537.1"
                     /translation="MKSTFSVIYYLKRQVVKKDGTVPVMGRITVDGSQTQFSCKLTVDP
                     KLWDTKGGRVTGRSTAALETNRMLDKMRVRINRHYQEIMERDNFVTAEKVKNAFLGLEH
                     RYHTLMQVFRQHNEDYEKQVEAGMKAKGTLLKYRTVYKHMQEFLDIRYHVKDIALKELT
                     PAFISDFEMFLRTDKHCCTNTVWLYVCPLRTMVFIAINNEWLTRDPFREYEIKKEETTR
                     SFLTKDEIRLLMEQSYYKKVKCGKI"
                     /name="phage integrase SAM-like domain and Arm DNA-binding
                     domain-containing protein"
ORIGIN
        1 tccatcagca ggcggatctc atctttggtc aggaaactgc gtgttgtttc ctccttcttg
       61 atttcatact cgcggaacgg gtcgcgcgtc agccactcgt tgttgatggc gatgaatacc
      121 atcgtccgta acgggcagac gtacagccac acggtattgg tgcagcagtg cttgtccgtg
      181 cgcaggaaca tctcgaagtc ggagatgaaa gccggggtaa gctcttttag ggcgatgtcc
      241 ttcacatggt agcggatgtc gaggaactct tgcatgtgct tgtaaacggt gcggtacttc
      301 agcagcgtgc ctttggcttt catgcctgcc tccacctgct tctcgtagtc ctcgttgtgc
      361 tggcggaaca cctgcatcag cgtgtggtag cggtgttcca gtccgagaaa ggcgttcttc
      421 accttctccg ccgtgacgaa gttgtcacgc tccatgattt cctgataatg cctgttgatg
      481 cgtacccgca tcttgtcaag catacggttc gtttcgagtg ccgccgtgct tctgcccgtg
      541 acacgtccac ctttggtgtc ccacagtttc ggatcgacag tcagtttgca gctgaactgt
      601 gtctggctgc cgtccaccgt gatgcgtccc atgacgggaa ctgtcccgtc ctttttcact
      661 acctgacgct tgaggtagta gattactgaa aatgtactct tcattgtcct taatttttgg
      721 gtttcaaaat tagttggtga agagtccggt gttggtacgc aaaacgggga ggaacggcgc
      781 aatctttttc cgtaacctga tttttcgcat gagttatgga taactcacta ttccttagag
      841 ccttgtttcg ctattcgtac ccgtttgtcg cattttcggg catggttacg aacaagtaac
      901 gtagcggcgt caggatttgg cttcggcagg gattgtaatg gcttcacgga ttatcgccac
      961 ttcaaccaaa acccttgtaa ctcaattcta tcactatatc tttccgcatt tcactttttt
     1021 gtagtaactt tgc
//
