LOCUS       NZ_OY725892             1057 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 82, complete sequence.
ACCESSION   NZ_OY725892
VERSION     NZ_OY725892.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725892.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="82"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     misc_feature    1..394
                     /note="16S ribosomal RNA rRNA prediction is too short"
     gene            578..654
                     /locus_tag="UHF62_RS00650"
                     /old_locus_tag="BFTSDC17_03724"
     tRNA            578..654
                     /locus_tag="UHF62_RS00650"
                     /old_locus_tag="BFTSDC17_03724"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:612..614,aa:Ile,seq:gat)
                     /name="tRNA-Ile"
     gene            724..797
                     /locus_tag="UHF62_RS00655"
                     /old_locus_tag="BFTSDC17_03725"
     tRNA            724..797
                     /locus_tag="UHF62_RS00655"
                     /old_locus_tag="BFTSDC17_03725"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:758..760,aa:Ala,seq:tgc)
                     /name="tRNA-Ala"
     misc_feature    937..1057
                     /note="23S ribosomal RNA rRNA prediction is too short"
ORIGIN
        1 ctgaggactc tggagagact gccgtcgtaa gatgtgagga aggtggggat gacgtcaaat
       61 cagcacggcc cttacgtccg gggctacaca cgtgttacaa tggggggtac agaaggcagc
      121 tacctggtga caggatgcta atcccaaaaa cctctctcag ttcggatcga agtctgcaac
      181 ccgacttcgt gaagctggat tcgctagtaa tcgcgcatca gccatggcgc ggtgaatacg
      241 ttcccgggcc ttgtacacac cgcccgtcaa gccatgaaag ccgggggtac ctgaagtacg
      301 taaccgcgag gagcgtccta gggtaaaact ggtaattggg gctaagtcgt aacaaggtag
      361 ccgtaccgga aggtgcggct ggaacacctc ctttctggag cgatgccgta agtgtcacaa
      421 ccgtgacagt cacttataga ctttacaggt tctgtttttt gtactactgg tacttgttta
      481 tttatagata tagatcaacc atctatagta ttatagatag agataaacaa gagaaaaaag
      541 aagccgagtc tagacgaaag gtagacaagg ttgaactagt cctatagctc agttggttag
      601 agcgctacac tgataatgta gaggtcggca gttcaactct gcctgggact accaagctca
      661 agaaggagga atagtgagag ccaaaagcta aaaactaaaa acaacattct tgaataacct
      721 cttgggggat tagctcagct ggctagagca tctgccttgc acgcagaggg tcaacggttc
      781 gaatccgtta ttctccacga tctctgaaaa gagaaacgat ctttgacatg atgatacaaa
      841 aagtaaaatt ttagtaagag ctaaaagtat atatcgaacc gtacgtttcc ggtatacaga
      901 ctagcaatag ttaaatatgc ctggaagtca gtttgaaaga aagtaagcaa gggcgcatgg
      961 cggatgcctt ggctctcgga ggcgatgaag gacgtgataa gctgcgataa gcttcgggta
     1021 ggtgcaaata acctttgatc cgaagatttc cgaatgg
//
