LOCUS       NZ_OY725891             1078 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 81, complete sequence.
ACCESSION   NZ_OY725891
VERSION     NZ_OY725891.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725891.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="81"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            358..>1077
                     /gene="tnpA"
                     /locus_tag="UHF62_RS00645"
                     /pseudo=""
     CDS             358..>1077
                     /gene="tnpA"
                     /locus_tag="UHF62_RS00645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004292844.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="transposon Tn4555 protein TnpA"
                     /name="tnpA"
ORIGIN
        1 tgtatttata accatagaac aaccaaaact aatcagaaat atccgagtgt aaatctttaa
       61 ttaccagcat attctaaaat ttaacacttt tcggttgcca tttgtcgctt cccaaatttc
      121 cacatatttt tgagacgtat ttctgacgtg gagaatttgc ggggcttgtt ttttgtcaca
      181 ccgtgcagac agttgacaag ggtttacaac cgtttacgac aagcgacaat aaccgccccg
      241 atatgcggaa acagtcacac tgtgtagaaa agcgacaatg gttgacttcc gttcacatcc
      301 gtttaccatt tcagagatat aggattgaag aaatgaacca ttaaacgata aaacggtatg
      361 aaagcaacca gaaaatgcag tttttgcggc aagtcctttg taacccgaag cggtatgcaa
      421 agatattgca gtgaggcttg tcaggcagaa gccaaacgag ccagagtgat gcagaagaac
      481 aacctcttca aagtcgccca acccttgatg gagatacagc atcaggagta tctcaccttt
      541 tccaaagcag ccatcctcat gggctgttcc cgacagtaca tttacaaact tgtagccatc
      601 ggcaagctga aagcctcacg catcagcaac cgcatggcat tcatccgcag agccgacatc
      661 gagcagatgt tggagggcaa tccctatcac cgcatcctgc ccggcaacac ctccacacca
      721 aggaaatcat cttcatcttc cttacctgcc aaaagagaaa aaagggaaaa ggaaagcgaa
      781 gaagtgttgg acttctattc gggcgaggag gtgatgtccc tttttaaggt aaagcagtca
      841 tggctttaca cttccgccaa gcgtaaccat atccccatct gccgtatcgc aggaaagaac
      901 tattacagca agaagcatat tgacgagttt ttcggtgtgg cagttgatat tagcgaaatt
      961 accgactggc tactgaccga ggaggtggag gaactgttcg gcatgaagcc gaccgcactc
     1021 cgtgcctaca cctatcgcca taagataccc actaaaagag agtacgggcg tacctatt
//
