LOCUS       NZ_OY725889             1318 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 79, complete sequence.
ACCESSION   NZ_OY725889
VERSION     NZ_OY725889.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725889.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1318
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="79"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            125..1288
                     /locus_tag="UHF62_RS00635"
                     /old_locus_tag="BFTSDC17_03722"
     CDS             125..1288
                     /locus_tag="UHF62_RS00635"
                     /old_locus_tag="BFTSDC17_03722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007568430.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4 family transposase"
                     /protein_id="WP_320582536.1"
                     /translation="MFQDKYVFAQLASFLNRSKFNRIVAKYDGDKYVKHFTCWNQLLAL
                     MFGQLSNRESLRDLIVALEAHHSKCYHLGMGKNVSKSSLARANQDRDYHIFEEYAYYLV
                     SEAREKRVTHIFKLSGNVYAFDSTTIDLCLSVFWWAKFRKKKGGIKVHTLYDIETQIPA
                     FFHITEASVHDSKVMNEIPYEPGSYYIFDRGYNNFKMLYKIHQIEAYFVVRAKKNLQYK
                     SIKWKRRLPKNVFSDASILLTGFYPKQYYPEPLRLVKYWDEEQEREFTFITNAMHISAL
                     QVAELYKNRWQVELFFKWLKQHLKIKRFWGTTENAVRIQIYAAICTYCLVAIIQHDMQL
                     DRSTYEVLQILSISLTDKTHLRDLFDKTKFQNDKERFGPNGPSLFNF"
                     /name="IS4 family transposase"
ORIGIN
        1 tcattgctgt cccattaaaa tctaaaatag ttctttgaaa tatttgaaat ttagttagtt
       61 acagaggttt ttcgagcgaa cggacttgaa ttcgtagctt tgtatcagat taatctgata
      121 gcatatgttc caagacaaat acgtttttgc tcagttggct tcgtttctga atcgaagtaa
      181 gtttaaccgc attgttgcca agtatgatgg cgacaaatat gtgaagcatt tcacctgctg
      241 gaatcaacta cttgctttga tgttcggtca actttctaat cgtgaaagtc tgcgagattt
      301 aatagttgcg cttgaagccc atcattccaa atgttatcat ttaggaatgg gtaaaaacgt
      361 atcaaagtca tcgctggcac gagcaaatca agatagggac tatcatatct ttgaagaata
      421 cgcttactac ctagttagcg aagcacgaga aaagcgtgtt actcatattt tcaaacttag
      481 tggcaacgtt tatgctttcg attcgacaac tattgacctg tgcctttcag tcttttggtg
      541 ggctaaattc cgcaagaaga aaggtggtat caaagtgcat acattatatg atatagaaac
      601 acagatacct gcattctttc atatcacgga agcatccgta cacgattcta aagtaatgaa
      661 tgagattcct tatgaaccag gctcttatta catctttgac cgcggttata acaacttcaa
      721 gatgctgtat aagattcatc agattgaagc ctacttcgtt gtcagagcaa aaaagaacct
      781 tcaatacaaa tccatcaaat ggaaacgtag gctgcctaag aatgtgtttt cagacgcgag
      841 catacttcta actggattct atcctaaaca atattatccg gagccactta gactggttaa
      901 atattgggat gaagaacaag aacgagaatt tacattcata accaatgcca tgcatatatc
      961 tgcacttcaa gttgctgaac tttataaaaa tcgttggcag gtagagctgt ttttcaagtg
     1021 gctaaagcag caccttaaaa tcaaaagatt ttgggggact acagagaatg ctgttcgaat
     1081 acagatatat gctgcaatat gcacttactg tttggtggca atcattcaac acgatatgca
     1141 actggataga agtacatacg aagtgctaca aatattgagc atctcattga ctgataaaac
     1201 tcatctgaga gacctctttg ataaaactaa atttcaaaat gacaaagaac gattcggacc
     1261 aaatgggcca agtttattta atttttaatt cgtcccaatt ttaatgggac actagtga
//
