LOCUS       NZ_OY725886             1665 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 76, complete sequence.
ACCESSION   NZ_OY725886
VERSION     NZ_OY725886.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725886.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1665
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="76"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            114..1559
                     /locus_tag="UHF62_RS00035"
                     /old_locus_tag="BFTSDC17_03721"
     CDS             114..1559
                     /locus_tag="UHF62_RS00035"
                     /old_locus_tag="BFTSDC17_03721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611265.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISBf8 family transposase"
                     /protein_id="WP_005642186.1"
                     /translation="MEAKIEKISELSKLLSVKTRMSDDLFHLFGKFGIGHLLSRLSLEK
                     QDGVSASELLLSLCLFRIVGESIHSICKHKIYELSNHGKNCFYRMMIRPQMDWRRLMNH
                     FALRYMCLLRKYGEVPQSDTTTCFIIDDTVLEKSGVRMEGISRVFDHMKGRCVLGYKLL
                     LCAFFDGKTTIPFDFSLHQEKGKQGNYGLTRQQLKKAYHTKRNTGNPDYKRFQECKMSK
                     LEVAMDMLRRGWKMGLHAKYVITDSWFTCEQLMTCVRSIGKGAMHFVGLAKMGKTKYTI
                     SGKKKNAAELIATYERERGKNCRKYKCRYIQLNGNLGDIPIRIFLIKYGRNSAWNVLLT
                     TDTTMSFVKAFEVYQIRWNIEVMNKETKQYLGLGGYQGCDFNGQIADATLCYLTYTVMA
                     LEKRFTEYQTMGELFSDMEGDLMALTLWKRVLTCIERILRILGEILGMTPQYLMATISG
                     NDKEMSKILVMAEALEKWDEVCG"
                     /name="IS4-like element ISBf8 family transposase"
ORIGIN
        1 actaaagttt cccacccaaa taaatagata gaaaaataac agtttgtcga attttctttg
       61 taaattagta atcgctaaag aactgatttt aaagacaaga caacaaaact gttatggaag
      121 caaaaataga gaaaataagt gagttatcca aacttttgag tgttaaaacc cgaatgagtg
      181 atgatttatt tcatcttttt ggcaagtttg gcatcggtca cctattatct cgcctttcat
      241 tggagaaaca ggacggagtt tcggcttcgg agttgctcct ctctctttgc ctcttccgca
      301 ttgtgggcga gagcatccat agtatatgca aacataagat atatgagctt tcaaatcatg
      361 gtaagaactg tttctatcgc atgatgattc gcccacagat ggattggaga cgattgatga
      421 accactttgc actgcgttat atgtgcctat tgcgtaagta tggcgaagtt cctcaatcag
      481 ataccactac atgtttcatt atagatgaca ccgtacttga gaagagtggt gtgaggatgg
      541 agggtatcag tcgtgttttc gaccatatga aaggcagatg cgtattgggc tacaagctgt
      601 tactttgtgc cttctttgac ggcaagacaa ctataccctt tgatttttca ctacatcaag
      661 aaaaggggaa gcaaggcaac tacgggctga caagacagca actcaaaaag gcatatcaca
      721 ccaagaggaa caccggcaat cctgattata agcgctttca agagtgtaag atgtctaagc
      781 tggaagttgc catggatatg cttcgccgtg gatggaagat ggggttacat gcgaagtatg
      841 tgattaccga tagttggttc acctgcgagc aacttatgac atgtgttaga agcataggta
      901 aaggggcaat gcactttgtt ggacttgcaa aaatgggaaa gacaaaatac actatatcgg
      961 gcaaaaagaa aaatgctgca gaactcattg ccacctatga acgtgaacga ggaaagaact
     1021 gtcgtaaata caaatgtcga tatattcagc tcaacggcaa cttaggagat atacctatca
     1081 gaatcttcct catcaagtat ggtagaaact ccgcatggaa cgttctgctc accacggata
     1141 caacgatgtc tttcgtaaaa gcctttgaag tgtatcagat tagatggaac atagaggtga
     1201 tgaacaagga gactaagcaa tatctcggat taggaggtta tcaaggttgt gactttaatg
     1261 gtcagatagc cgacgcaacg ctgtgttacc ttacatatac cgtcatggct ttggaaaaga
     1321 gattcacaga atatcaaacc atgggcgaac tcttttcgga tatggagggt gatctcatgg
     1381 cactcacgtt atggaagcga gttcttacct gcatcgaacg cattcttcgc attttaggag
     1441 aaatacttgg aatgacgccc caatacctta tggctacaat cagcggaaac gacaaagaga
     1501 tgagcaaaat ccttgtaatg gctgaagcgt tggaaaaatg ggacgaagta tgtggatagt
     1561 ctgcataact tctgttaggc atgtgttaac agtcaatgga tatgggggaa gacagacaaa
     1621 ggaaaatgag aaaagttagt gttttaaggg gtgggaaact ttagt
//
