LOCUS       NZ_OY725884             1828 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 74, complete sequence.
ACCESSION   NZ_OY725884
VERSION     NZ_OY725884.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725884.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1828
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="74"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(31..1698)
                     /locus_tag="UHF62_RS00030"
                     /old_locus_tag="BFTSDC17_03719"
     CDS             complement(31..1698)
                     /locus_tag="UHF62_RS00030"
                     /old_locus_tag="BFTSDC17_03719"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ISL3 family transposase"
                     /protein_id="WP_195591494.1"
                     /translation="MQQVISTTYKYTSKKENTPTNRGLFHDFRFSLGYDNLQQDGISEA
                     VGSLTVFLHTAGKGASCPYCGHFSHRLHSYYSRHIEDLEVYGHTLELVIKVGKYYCDNV
                     SCPQKIFCEPLSFLARRYGRRSYLVEERIRSISLELTSRKASSLLQLFHITASSSSCLR
                     ILQQCGQHNPMHNKSIYVGIDDFAYKKGKDYMSVVVDQMTHIPIALLEDRNGEALDNWL
                     IRNPQIQYITRDRGRCFTEAINRIIPGVTQICDRFHLIKNMTDTMIPEIEKMIRQTKKK
                     LKYEYPDRDTASSLILQDIFNMGDVRHREKLKIYRESLNLKMQGMTIEQTATHLGKKSR
                     YIYKIIHNRRIGAYLNEQQKTALKYVSELATIISAGCITRKILAQKMGSKISGALIGRI
                     TSSLRKRYQQKRKEIKEHNESIENGSKIQRVSQNQIRKYILKGESDNPKLAELYKSSPQ
                     IKELLSVCQNFRDMINGNTYDKDIRKWIEKAKATRNMPLTNFAYGIEKDWEAVQAAIDI
                     PFSNGLLEGTVNKIKAVKRQMYNRAGIKLLRAKIIYSQ"
                     /name="ISL3 family transposase"
ORIGIN
        1 ggttcttcgt caaatttggt ggtacttctt ctattgtgaa taaataatct tcgctctcag
       61 tagtttaatt cctgccctat tgtacatctg tctttttacc gctttaattt tattcactgt
      121 cccctccagt aatccgttac tgaaggggat atcaatagct gcctgtactg cctcccagtc
      181 tttttcaata ccatatgcaa agttcgtcag tggcatattc cgtgttgcct tcgctttttc
      241 aatccacttt ctaatatcct tatcataagt gttcccatta atcatgtctc tgaaattttg
      301 acacacgctt aagagttctt ttatctgtgg tgaggactta tacagttccg ctagtttagg
      361 attatccgat tctcccttta gaatgtattt gcgtatctga ttctgtgaaa ctctctgtat
      421 tttacttccg ttttcaatgc tctcattatg ctccttgatt tccttcctct tttgttgata
      481 cctttttcgc aagctggatg ttatccttcc aataagtgcg ccactgattt tactccccat
      541 tttttgcgcc aatatttttc gagtaataca gcccgcacta atgattgtag ccagttcgga
      601 tacatattta agagctgtct tctgttgctc attcaagtat gcccctattc ttctgttgtg
      661 aataatctta taaatgtagc gacttttctt acccaaatgt gtggctgtct gctcaatggt
      721 catcccctgc atttttaagt tcaagctttc cctgtatatc ttcaattttt ctctgtgtcg
      781 gacatctccc atgttaaata tgtcctgaag aattaacgaa gaagccgtgt ctctgtcagg
      841 atattcgtat ttgagctttt tcttggtctg acggatcatt ttctctattt ccggtatcat
      901 cgtgtccgtc atattcttga ttagatgaaa ccggtcacag atttgtgtaa caccagggat
      961 tattctgttt atagcttctg tgaaacatct tccacggtct ctcgttatat attgtatttg
     1021 aggattccgg atgagccagt tatcaagtgc ttctccgttt ctatcctcta acaaagcaat
     1081 aggtatgtgt gtcatctggt ctacgaccac actcatataa tccttacctt ttttataggc
     1141 aaaatcatca atacctacat aaatactttt attatgcata ggattatgtt gtccgcactg
     1201 ttgtaggatg cgtaagcagg aagaactact ggccgttata tggaacagtt gtaaaagaga
     1261 agaggccttt cgggaagtaa gttccaagct tatcgatctg atgcgttcct caacaagata
     1321 gctccgtcta ccataccgac gagccagaaa agacaacggt tcgcagaata ttttttgtgg
     1381 acaagaaaca ttatcacaat aatatttgcc aacctttatg actaactcca aagtatgacc
     1441 gtaaacttca agatcctcaa tatggcggga gtagtaactg tgcaatcggt gactgaaatg
     1501 tccgcaataa ggacaggaag cccccttgcc agccgtatgt agaaagaccg tcaatgagcc
     1561 aacagcttca gagataccat cttgttgcag attatcgtag ccaagactga atctgaaatc
     1621 atggaataat cccctatttg taggagtatt ttcttttttt gatgtatatt tgtacgttgt
     1681 agatatgact tgttgcattg taactcttaa tgatgtggtg tctttaaagt tactaaaaag
     1741 caaacatatc tacaactttt aataggatta agaaagaaga agaccggtga aataaaaaag
     1801 agattaccac caaatttgac gaagaacc
//
