LOCUS       NZ_OY725883             1971 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 73, complete sequence.
ACCESSION   NZ_OY725883
VERSION     NZ_OY725883.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725883.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1971
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="73"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(join(1956..1971,1..1391))
                     /gene="ltrA"
                     /locus_tag="UHF62_RS00025"
     CDS             complement(join(1956..1971,1..1391))
                     /gene="ltrA"
                     /locus_tag="UHF62_RS00025"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_function="GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="WP_320582535.1"
                     /translation="MKKQQRSKAKAECASSAKHSNTWKEIDFSKCECKVRKLQIRIAKA
                     QKKKRYNKVRALQHLLVTSYEAKALAVRKVTSNKGKRTAGVDHVLWDTDARKVNALCSL
                     KRRGYRALPLKRVNIPKKNGKMRPLGIPTMRDRAMQALYLMALEPVTETTADANSYGFR
                     KFRSTADAIDALHRWLSRDCSPQWILEGDIKGCFDHISHEWLLDNVRIDKHILGKWLKS
                     GVVFNKLLQPVVEGTPQGGIISPTLANAALDGMERILKEKYKVSYIDGRLYHPKVNCVR
                     YADDFIVTADKRKTLEDIKHMLTRFLEKRGLMLSEEKTLITHISEGFDFLGFNVRKYNG
                     TLIIKPSKKSQKRFTVKLHEIILAKGKALSQQELIGKLNPIIQGWGNYYSHVVSKEVFC
                     RCDQVLINQIKRWAYRKHTDKSREWIRNKYFIRDGNRSWIFGLEYVCGGIKDKFILRKL
                     ADIPISFLYL"
                     /name="ltrA"
ORIGIN
        1 ctgattggaa tgtctgccag tttacgtagt atgaacttat cctttatacc accacataca
       61 tattcgagtc cgaatatcca gcttctgttt ccatcacgga taaagtattt gttccgtatc
      121 cattctcttg acttgtcggt atgcttgcga tatgcccatc tctttatctg atttatcagg
      181 acctgatcac atcggcagaa cacttccttt gaaaccacat gactataata gttcccccat
      241 ccctgtatta tagggttgag tttccctatc agttcctgct gcgacaatgc tttgcctttg
      301 gctaggatta tttcatgcag tttgacggtg aaccgttttt gacttttctt agatggtttg
      361 attatcaatg taccgttata cttccggaca ttgaacccca aaaagtcaaa tccctcgctg
      421 atgtgtgtta tcagtgtctt ttcttcggat agcatgagac cacgcttctc aagaaacctt
      481 gtcagcatgt gttttatatc ctccaatgtt ttccgtttgt ctgctgtaac gatgaagtcg
      541 tccgcataac gcacgcaatt cactttcgga tgatagagcc tcccatcgat ataacttacc
      601 ttatacttct ctttcagtat tctttccatg ccatcaagtg cggcattggc aagtgtcggt
      661 gagatgatac cgccttgcgg agtaccttct acgaccggtt ggagcagttt gttgaatacg
      721 actccacttt tcagccattt ccctaagata tgcttgtcga ttcgtacgtt atcgagaagc
      781 cattcgtggc tgatgtggtc gaagcaccct ttgatgtccc cctccaatat ccattgggga
      841 gaacaatccc tgcttagcca tctgtgcaag gcatcaatgg cgtctgccgt gctcctgaac
      901 tttctaaacc cataagagtt agcatccgct gttgtttccg taactggttc caatgccatc
      961 agataaagag cctgcatagc cctgtccctc atggttggaa tcccgagcgg tctcatcttt
     1021 ccgttcttct tgggtatgtt gacccttttc agtgggaggg ctctgtaccc tctccgtttc
     1081 aaagaacaca atgcgtttac cttcctggca tcagtgtccc ataatacatg gtcaacccct
     1141 gccgtacgtt tgcctttatt ggaggtcacc ttccttacag ccaatgcctt ggcttcgtaa
     1201 gaagtgacaa gaaggtgttg caaggctctg accttgttgt accttttctt tttctgagcc
     1261 tttgctattc ggatttgcag ctttctaacc ttgcactcac atttggaaaa atctatttct
     1321 ttccatgtat tgctgtgctt ggctgaagat gcacactcgg ctttcgcctt gctcctttgc
     1381 tgtttcttca tttctttcga gttctacaat cgtttcacaa agaattaccc tgcggaagtc
     1441 tgcctgcttt cgcatgaggt gacgtttaaa cctctatcct ccgcattaca cggaagcttt
     1501 cgctttctcc gcaatccttt acccgcacct cgttcggctt ttcttgcgat tagcttacct
     1561 acccgaatac agctaggaga aactacgggc ttaccaagtt ccatacaagt aactgacgat
     1621 tgacttagag tccgcctctc caccggcagt atgatgtccg tgtagcctta catcccaaaa
     1681 agactatcct gactgcccgc cttttggcta tagcttgtaa atatccgtaa gctatttctt
     1741 tattacgatg gtgcagcgat tcacatatgt tactcatatc agtcagccta acagcccata
     1801 cattggatat ttctgtaaag gacagcattg tcaagagggc ttcgcaccaa accattacta
     1861 gtaaagcacg cctctttagg ctactattga cggaacaata ggtttagacg cagtgctaaa
     1921 caattactta tacgacttct tgtcgcacgg aatgcttaaa gatacaaaaa a
//
