LOCUS       NZ_OY725882             2286 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Bacteroides finegoldii strain Bacteroides finegoldii TSDC17.2-1.1
            plasmid 72, complete sequence.
ACCESSION   NZ_OY725882
VERSION     NZ_OY725882.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266237
            Sequence Read Archive: ERR11835631, ERR11835633
            Assembly: GCF_963360665.1
KEYWORDS    RefSeq.
SOURCE      Bacteroides finegoldii
  ORGANISM  Bacteroides finegoldii
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae;
            Bacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 03:29:57
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 3,702
            CDSs (total)                      :: 3,627
            Genes (coding)                    :: 3,479
            CDSs (with protein)               :: 3,479
            Genes (RNA)                       :: 75
            rRNAs                             :: 5, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 5, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 66
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 148
            CDSs (without protein)            :: 148
            Pseudo Genes (ambiguous residues) :: 0 of 148
            Pseudo Genes (frameshifted)       :: 40 of 148
            Pseudo Genes (incomplete)         :: 119 of 148
            Pseudo Genes (internal stop)      :: 22 of 148
            Pseudo Genes (multiple problems)  :: 28 of 148
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725882.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2286
                     /organism="Bacteroides finegoldii"
                     /mol_type="genomic DNA"
                     /strain="Bacteroides finegoldii TSDC17.2-1.1"
                     /db_xref="taxon:338188"
                     /plasmid="72"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            30..341
                     /locus_tag="UHF62_RS00005"
                     /old_locus_tag="BFTSDC17_03715"
     CDS             30..341
                     /locus_tag="UHF62_RS00005"
                     /old_locus_tag="BFTSDC17_03715"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_237924663.1"
                     /translation="MAESQSLGQNGYLKCSNGLLIQWGKHSGSTSPSVTIYLTESFLDA
                     DYIIQGSIIKDASDNNVYSALPIANPTKSSFKLDRNFSSTNTGVSSAKFNWIAIGRWK"
                     /name="hypothetical protein"
     gene            358..897
                     /locus_tag="UHF62_RS00010"
                     /old_locus_tag="BFTSDC17_03716"
     CDS             358..897
                     /locus_tag="UHF62_RS00010"
                     /old_locus_tag="BFTSDC17_03716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="WP_237924662.1"
                     /translation="MKQKMYWKNGFYDTAQEGAIEITKKYWQELLDGQSAGLIIVENEK
                     GYPVLKEYKQTLLELKAQKISELQAYDSSESVNSFSIDNVSGWLNKATRVGLMNSISIE
                     RESGRSETTIWLNDAKLVLSIEKAIDMLQQIELYALACYHTTQGHIKAINQLETKEEIE
                     AYNFKTGYPGKLSFFG"
                     /name="DUF4376 domain-containing protein"
     gene            complement(867..1406)
                     /locus_tag="UHF62_RS00015"
                     /old_locus_tag="BFTSDC17_03717"
     CDS             complement(867..1406)
                     /locus_tag="UHF62_RS00015"
                     /old_locus_tag="BFTSDC17_03717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4376 domain-containing protein"
                     /protein_id="WP_237924661.1"
                     /translation="MKQKMYWKNGFYDTPIDGAVEITIENYKELLDGQSSGKLIVTNDE
                     GYPVLVENEYSLEDMRKIKVSEIQLFDKSKEVNSFDLQAKSMWLDKSTRVGLFNSINIE
                     KEAGKTETVLWYDAVKYIIPISDALAMLNALEMYALECYNVTQSHIAAVKALNTIGEIE
                     SYDYTVGYPKKLSFPG"
                     /name="DUF4376 domain-containing protein"
     gene            complement(1521..1907)
                     /locus_tag="UHF62_RS00020"
                     /old_locus_tag="BFTSDC17_03718"
     CDS             complement(1521..1907)
                     /locus_tag="UHF62_RS00020"
                     /old_locus_tag="BFTSDC17_03718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007759404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_237924660.1"
                     /translation="MKHFSRKLVAILVLIIWLSSLGTNYAKSDMSNIVTKSFGQNGYIK
                     FSNKFIVQWGFATDNQTYYKQTVYLPISFLDGSSYVVVTSARSAYTDYYVGRTIASLSA
                     SSFVVSVNQANKEPFYWIAIGYGR"
                     /name="hypothetical protein"
ORIGIN
        1 tactaagtac tctcggaact aagtcaattt tggcagaaag tcaaagctta ggacaaaatg
       61 ggtatctgaa atgtagtaat ggattgctaa tccaatgggg aaaacattcc ggctctactt
      121 ctccaagtgt aacgatttac ttaactgaat cctttttgga tgcagattat atcattcagg
      181 gaagtatcat taaggatgct tctgataata atgtatattc agctttgccg attgccaatc
      241 ctacaaagag ttcgtttaag ttagatagga atttctcttc tactaacact ggagtttcga
      301 gtgctaagtt taattggata gctattggac gttggaaata aaacaaaata gataagtatg
      361 aagcaaaaaa tgtattggaa gaatggtttc tacgacacag cccaagaagg tgcaatagag
      421 attacgaaaa agtattggca agaattatta gacggtcaat ctgccggact cataatcgta
      481 gagaacgaga aaggatatcc cgtattgaag gaatacaaac aaacgttatt agaattgaaa
      541 gcccaaaaga tatcggaatt acaggcgtat gactcatccg aatcggtgaa tagttttagt
      601 attgataatg tatccggttg gctaaacaag gctacacgtg taggtctcat gaactcaatt
      661 agtattgaaa gggaatccgg acgatccgaa acgactatct ggctaaatga tgcaaagtta
      721 gtcttatcaa tcgagaaagc cattgatatg ctacaacaga tagaattata cgcccttgcg
      781 tgttaccata caacacaagg gcatatcaaa gccattaatc aactggaaac gaaagaagaa
      841 atcgaagcct acaactttaa aaccggctat cccggaaagc taagcttctt tggataacca
      901 acggtataat cgtagctttc aatctctccg attgtattca atgccttgac tgctgcaata
      961 tgtgattgtg ttacattgta gcactcaagc gcatacattt ccagagcatt caacatagcc
     1021 aaagcatctg atattggaat gatatatttt actgcatcat accaaagcac agtctccgtt
     1081 ttgcccgcct ctttttcgat attaattgag ttaaataatc caacacgtgt agacttatcc
     1141 aaccacatac ttttagcctg taaatcaaaa gaattgacct cttttgattt gtcaaacaat
     1201 tgaatctcag atacttttat ttttcgcata tcttcaaggg agtactcgtt ttctaccaat
     1261 acaggatacc cttcatcatt ggtaacaatg agcttcccgg atgactgccc atccagaagt
     1321 tccttataat tttctatagt tatttctacc gcaccgtcta tcggtgtgtc gtagaaacca
     1381 ttcttccaat acattttttg cttcatactt atctatttta ttatttccaa attccaatgg
     1441 caaaccaatc aaaggattca ccaggaaacc ctttattact attataggga tcataaaaag
     1501 ttcctatgtt taaaataaaa tcatcttcca taacctattg caatccaata aaaaggttct
     1561 ttgtttgctt gatttacaga tactacaaac gaactagcac ttaaactggc aatcgttcta
     1621 ccaacataat aatcagtata ggcgcttcga gcactagtta ctacaacata tgatgatccg
     1681 tcaagaaatg atataggcaa gtaaacagtt tgtttataat aagtttggtt atctgttgca
     1741 aatccccatt gaactataaa tttattgcta aactttatat atccattctg cccaaacgat
     1801 tttgtaacga tattagacat atctgattta gcgtaattgg ttccgagaga acttagccaa
     1861 attatgagca ctaaaattgc taccaatttt ctactaaaat gtttcatgac ttaaataatg
     1921 ttgtgatatt atactatttc caacttccta tcgctatcca tctgaatggt ggagcagaaa
     1981 aaaacacccc tgattcattt gcatatcttc tataaaccgt aaaatatgaa gtatatatag
     2041 aaccataatt cacagaccat atagaattat ccgtattatc cgcagaacta gaaaaagcta
     2101 gggaaaaaca agatttaaaa gataatggga aattaacaga ctgattatcc gaagtgccag
     2161 cactaaaata cccccactgt atcaacagtc catccggaaa cttataatat ccatttaatc
     2221 ctagcgattt tgtaatgaca tttgagaagt cagatttggc aaaattggtt ccgagagtac
     2281 ttagta
//
