LOCUS       NZ_OY725808              631 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 63, complete sequence.
ACCESSION   NZ_OY725808
VERSION     NZ_OY725808.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725808.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="63"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            <2..538
                     /locus_tag="UNS60_RS19370"
                     /old_locus_tag="PDTSDC17_04573"
                     /pseudo=""
     CDS             <2..538
                     /locus_tag="UNS60_RS19370"
                     /old_locus_tag="PDTSDC17_04573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009276318.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA]"
                     /GO_process="GO:0015074 - DNA integration [Evidence IEA];
                     GO:0006310 - DNA recombination [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /name="site-specific integrase"
ORIGIN
        1 aaggaagaca cagttggccc tttgtttgat gtttcaatat gggggaatgt cgttcgttga
       61 tttcgcccat ttgaatagag gtaatatcaa gaacggcata ttggattaca atcgccagaa
      121 gaccgggacc tctatgcggt tggaggtctt ggatacggcg gaagctatgt ataaggaact
      181 ggcaggtgag agggcgggag gctccggcta tttatttccc tttttaagtg ggacgaagaa
      241 cggccatgag gaatatctcg agtacaatgc ggccttgtcc cggtttaacc ggaacttgaa
      301 gacgttgaaa gaggttgccg gaatagtctc ggatgtgact tcttacacga tccgtcattc
      361 ttttgccatg gcattgaagg aacaaaatgt ccccatagag atgatcagcg agttattagg
      421 ccataaatcc atcaagacaa cccagattta tctgagaagt ttctcgttgg agaaaatgac
      481 ggtggtaaac aagtcttgct ttgagaatgt atataattat atgccagagg tgggatgagg
      541 ctacttgggg agtagcgttc atttcacggt gcaaatgtag caaaaaatag caaataacaa
      601 gcaatcatta gttttagttt gtgctccggc c
//
