LOCUS       NZ_OY725805              960 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 60, complete sequence.
ACCESSION   NZ_OY725805
VERSION     NZ_OY725805.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725805.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="60"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(join(927..960,1..767))
                     /locus_tag="UNS60_RS19355"
     CDS             complement(join(927..960,1..767))
                     /locus_tag="UNS60_RS19355"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /GO_component="GO:0016020 - membrane [Evidence IEA]"
                     /GO_function="GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA]"
                     /GO_process="GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="WP_320643422.1"
                     /translation="MKIKRLLLLLALPLLVASCTSYKNVPYLQNPEAVNDFEETLPLYD
                     AKIMPKDLLSITVNTTDPKAATPFNLTVQTPINAALTNISTTTQPTMQQYLVNNKGEID
                     FPVIGRLEVGGLTKNEAEDLIRERLKPYLKESPIVTVRMSNYKISVLGEVARPGSFTIG
                     NEKVNVLEALAMAGDMTIYGVRDNVKLIREDVNGKREIINLNLNNAEVVTSPYYYLKQN
                     DIIYVTPNKTKAKNSDIGNSTTLWVSSLSILVSIVILVVSRTGV"
                     /name="polysaccharide biosynthesis/export family protein"
ORIGIN
        1 atagatacca gaatcgagag tgagcttacc caaagggtcg tgctgttacc gatatcggag
       61 ttcttagcct tcgtcttgtt cggggtcacg taaataatat cgttttgctt caggtaataa
      121 tacggggaag tcacgacttc ggcattattc aaattcaagt taatgatctc acgcttaccg
      181 ttcacgtcct cacggatcag cttgacgtta tcacggacac cgtaaatcgt catatcacct
      241 gccatcgcca aagcctccag aacgttcacc ttctcgttgc cgatcgtgaa gctacccgga
      301 cgggccacct cacccaacac ggagatcttg taattagaca tacggaccgt aacgatcggg
      361 gattccttca aataaggttt caaacgctca cgaatcaagt cctccgcctc gttcttggtg
      421 agaccaccca cttccaagcg accgataaca gggaaatcga tctctccttt attattcacc
      481 aagtattgct gcatggtcgg ttgcgtggtc gtactgatat ttgtcaaagc cgcattgatt
      541 ggagtctgta ccgtcaagtt gaatggggtc gcagccttcg ggtctgtcgt attgaccgtg
      601 atgctcaaca agtcttttgg catgatcttg gcgtcataca acggaagggt ctcctcaaaa
      661 tcgttcactg cctctgggtt ttggaggtat ggtacgttct tgtaagaagt acaactcgct
      721 accaatagag gtagagctaa taaaagtagt aatcttttga ttttcatatt attttgtttt
      781 ctttttttat ttcattgaac acagaatgat atggatttag cgaaacaaac gagagaaaag
      841 gcctttcggt ttctccggtt cgtattccga ctcgtatttc cgcattaaat cctcatagga
      901 aagtctttta ctcaccatct cgtaaatcat accccagtcc gggagaccac caagattacg
//
