LOCUS       NZ_OY725804             1037 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 59, complete sequence.
ACCESSION   NZ_OY725804
VERSION     NZ_OY725804.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725804.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="59"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(join(886..1037,1..43))
                     /locus_tag="UNS60_RS19340"
     CDS             complement(join(886..1037,1..43))
                     /locus_tag="UNS60_RS19340"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_320643421.1"
                     /translation="MKKGKQHTEKRESSMKGESPKDVLASMPEKDFDKVSEVVGNLKAT
                     NLTRQQRRRIEREFKTVRR"
                     /name="hypothetical protein"
     gene            complement(154..435)
                     /locus_tag="UNS60_RS19345"
                     /old_locus_tag="PDTSDC17_04570"
     CDS             complement(154..435)
                     /locus_tag="UNS60_RS19345"
                     /old_locus_tag="PDTSDC17_04570"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_211744471.1"
                     /translation="MVTKADLKIEAARLATESVNEAREKGEKLEFTPLAEEIYNFLQKD
                     LDLKDTDDPQGMVSQVASMIGGMNWNNISPKQTEDGSDTKEDVAGETA"
                     /name="hypothetical protein"
     gene            complement(407..889)
                     /locus_tag="UNS60_RS19350"
                     /old_locus_tag="PDTSDC17_04571"
     CDS             complement(407..889)
                     /locus_tag="UNS60_RS19350"
                     /old_locus_tag="PDTSDC17_04571"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_211744472.1"
                     /translation="MIRRDYHIKRYDWVIHVLYNVTCSRISDIIALLRRAGCPESKIRE
                     AYGNVGSCKLDVGLTYSNYRSRESVMVIGRTSSYREFSNSLFHECRHLTDHMAIALNMD
                     VGGEEIAYLSGYIGGKLAPDIQLFICDCNCHKNEINRHIYQQKKRKENGNKSRFKN"
                     /name="hypothetical protein"
ORIGIN
        1 tggaggattc tctcttttct gtatgttgct tacctttttt cattattaac gagtggacac
       61 cataagaaaa acaataagat tatccacata taccctgtac ctgttgtgtc cctttgataa
      121 gggagaggtc taaccaaatg cgaggatgat cgtttaagcc gtttcgcctg caacatcctc
      181 tttcgtgtct gatccatctt ctgtttgttt aggtgatata ttgttccaat tcattccccc
      241 aatcatagaa gccacttgcg aaaccatacc ttgaggatca tccgtgtcct tcaaatccaa
      301 atccttttga agaaagttat atatttcttc cgctaaagga gtaaactcca atttttcccc
      361 tttttcgcgc gcctcattta cggattccgt cgcaagacga gcggcctcaa tttttaaatc
      421 tgcttttgtt accattttct tttctttttt tttgttgata aatatgtctg tttatctcgt
      481 ttttatgaca attgcaatca caaatgaaca gctggatatc gggagctagc tttcctccta
      541 tgtacccgct taggtaagct atctcttctc cacccacatc catatttaag gctatagcca
      601 tgtgatcggt caagtgccgg cactcgtgga acaacgaatt ggagaactcc ctgtaagacg
      661 aggtccggcc tatcaccatg acggattccc ggctgcggta attcgaatag gtcagtccca
      721 cgtccagctt gcaggatcct acgttgccat aagcctcccg tatcttgctt tccgggcaac
      781 cggccctcct caatagggct atgatatcgg atatcctcga gcaggtgacg ttatacagca
      841 cgtggatcac ccaatcgtat ctcttgatat ggtaatcccg tcgtatcatc tccttaccgt
      901 cttgaactcc cgctctatcc tcctcctttg ttgccgggtg agattggttg ccttgagatt
      961 gcccaccacc tcggatacct tgtcaaaatc cttctccggc atactcgcca gcacgtcctt
     1021 gggggactct cccttca
//
