LOCUS       NZ_OY725800             1565 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 55, complete sequence.
ACCESSION   NZ_OY725800
VERSION     NZ_OY725800.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725800.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="55"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            1..1326
                     /locus_tag="UNS60_RS18395"
                     /old_locus_tag="PDTSDC17_04566"
     rRNA            1..1326
                     /locus_tag="UNS60_RS18395"
                     /old_locus_tag="PDTSDC17_04566"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
                     /name="16S ribosomal RNA"
     gene            1477..1550
                     /locus_tag="UNS60_RS18400"
                     /old_locus_tag="PDTSDC17_04567"
     tRNA            1477..1550
                     /locus_tag="UNS60_RS18400"
                     /old_locus_tag="PDTSDC17_04567"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1511..1513,aa:Ile,seq:gat)
                     /name="tRNA-Ile"
ORIGIN
        1 atatttgcta aagattcatc gctgatagat aggcatgcgt tccattaggc agttggcggg
       61 gtaacggccc accaaaccga cgatggatag gggttctgag aggaaggtcc cccacattgg
      121 tactgagaca cggaccaaac tcctacggga ggcagcagtg aggaatattg gtcaatggcc
      181 gagaggctga accagccaag tcgcgtgagg gatgaaggtt ctatggatcg taaacctctt
      241 ttataaggga ataaagtgcg ggacgtgtcc cgttttgtat gtaccttatg aataaggatc
      301 ggctaactcc gtgccagcag ccgcggtaat acggaggatc cgagcgttat ccggatttat
      361 tgggtttaaa gggtgcgtag gcggcctttt aagtcagcgg tgaaagtctg tggctcaacc
      421 atagaattgc cgttgaaact ggggggcttg agtatgtttg aggcaggcgg aatgcgtggt
      481 gtagcggtga aatgcataga tatcacgcag aaccccgatt gcgaaggcag cctgccaagc
      541 catgactgac gctgatgcac gaaagcgtgg ggatcaaaca ggattagata ccctggtagt
      601 ccacgcagta aacgatgatc actagctgtt tgcgatacac tgtaagcggc acagcgaaag
      661 cgttaagtga tccacctggg gagtacgccg gcaacggtga aactcaaagg aattgacggg
      721 ggcccgcaca agcggaggaa catgtggttt aattcgatga tacgcgagga accttacccg
      781 ggtttgaacg cattcggacc gaggtggaaa caccttttct agcaatagcc gtttgcgagg
      841 tgctgcatgg ttgtcgtcag ctcgtgccgt gaggtgtcgg cttaagtgcc ataacgagcg
      901 caacccttgc cactagttac taacaggtaa agctgaggac tctggtggga ctgccagcgt
      961 aagctgcgag gaaggcgggg atgacgtcaa atcagcacgg cccttacatc cggggcgaca
     1021 cacgtgttac aatggcgtgg acaaagggag gccacctggt gacagggagc gaatccccaa
     1081 accacgtctc agttcggatc ggagtctgca acccgactcc gtgaagctgg attcgctagt
     1141 aatcgcgcat cagccatggc gcggtgaata cgttcccggg ccttgtacac accgcccgtc
     1201 aagccatggg agccgggggt acctgaagtc cgtaaccgaa aggatcggcc tagggtaaaa
     1261 ctggtgactg gggctaagtc gtaacaaggt agccgtaccg gaaggtgcgg ctggaacacc
     1321 tcctttctgg agctttagga ttccgtaccg aggtcatacg aggtatcgat cgccttgtgc
     1381 tgctgttgag attatgttta ttatatagat caatgaccgg aaggccggtc ggagagaaaa
     1441 agatgacgct gggacgtaag tcttggcaaa gttgacagtc ctatagctca gttggttaga
     1501 gcgctacact gataatgtag aggtcggcag ttcaactctg cctgggacta ctccgaatga
     1561 ggggg
//
