LOCUS       NZ_OY725799             1584 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 54, complete sequence.
ACCESSION   NZ_OY725799
VERSION     NZ_OY725799.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725799.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="54"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(205..612)
                     /locus_tag="UNS60_RS18375"
                     /old_locus_tag="PDTSDC17_04562"
     CDS             complement(205..612)
                     /locus_tag="UNS60_RS18375"
                     /old_locus_tag="PDTSDC17_04562"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_249931987.1"
                     /translation="MEENIKEKSIKLAIEAMRPLPVNSFAGYCSVGDDRSPEEKHKDDM
                     RYCKEFNELQSEMLIGLANKIKDFLSSSKQMETGQKQMPPLGVMPKDIYYKNVHRARFH
                     ELCGAVSRYYNAGFPIKLEWIEEYNELLGKI"
                     /name="hypothetical protein"
     gene            complement(629..841)
                     /locus_tag="UNS60_RS18380"
                     /old_locus_tag="PDTSDC17_04563"
     CDS             complement(629..841)
                     /locus_tag="UNS60_RS18380"
                     /old_locus_tag="PDTSDC17_04563"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_211744470.1"
                     /translation="MKARELEKNSPSLDLIYNAIKEANKRNEYKIFFPHWVYLSDECKL
                     ELMRQGFKLYQGEWHRGDYGLIIEW"
                     /name="hypothetical protein"
     gene            complement(886..1209)
                     /locus_tag="UNS60_RS18385"
                     /old_locus_tag="PDTSDC17_04564"
     CDS             complement(886..1209)
                     /locus_tag="UNS60_RS18385"
                     /old_locus_tag="PDTSDC17_04564"
                     /inference="COORDINATES: protein motif:HMM:NF016343.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF551 domain-containing protein"
                     /protein_id="WP_320643417.1"
                     /translation="MSKIDTGQTVEEAAHLFAESRSSGSAFPAYYQGFIAGAEWQAKQS
                     PWVSVKERLPENQDIVLVRGEYGGKATAYLHGKDSGFIVYGEDAYKVFGEVTHWCHIPD
                     LEE"
                     /name="DUF551 domain-containing protein"
     gene            complement(1196..1498)
                     /locus_tag="UNS60_RS18390"
                     /old_locus_tag="PDTSDC17_04565"
     CDS             complement(1196..1498)
                     /locus_tag="UNS60_RS18390"
                     /old_locus_tag="PDTSDC17_04565"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_008771580.1"
                     /translation="MTKQEYQQRFQDLNNQIEKLKLEYVNSLPFKKGDFVRVNNKGKYI
                     EAYIEDVFMPIYDLSGNRFNLLVEDNENDEYCYVIAYIQIEDIEVIKRGKDNEQD"
                     /name="hypothetical protein"
ORIGIN
        1 gacgtgaact agatcggttg gttgattctc tcgatttcga gcctgtcaac tttcatgagg
       61 tgatggcccg gatacggcac ttgatgtgcc tgttatagcc caatatcgct tattattctc
      121 cggcctatac gccgttggca ggggaatcac ccccggcata gtttaagtaa aatgtaatag
      181 ttaagacttg ttctgacatt tgttttatat ctttcctaat aattcgttat actcctctat
      241 ccattcaagt tttattggaa aaccagcatt gtaataacgc gatacagccc cacataattc
      301 atgaaatcta gccctatgaa catttttata ataaatatcc tttggcatta cccctaacgg
      361 aggcatttgt ttttgtcctg tttccatttg ttttgaactt gataaaaaat cttttatttt
      421 attggctagt cctatcagca tttctgattg gagctcattg aactccttgc agtacctcat
      481 gtcatcttta tgcttctctt ccggagaccg atcatcgcct acgctgcaat atccggcgaa
      541 agagtttacc ggtagtggtc tcatagcctc tatagctagt ttgatcgatt tctctttgat
      601 gttttcttcc atgatttatt attatttgtt accattctat tattaatcca taatcccctc
      661 ggtgccattc tccttgatag agcttgaatc cttgtctcat gagttcaagt ttgcactcat
      721 cggataagta tacccaatgc gggaaaaata ttttatactc gtttcgttta ttcgcttctt
      781 ttatagcatt atatatcaga tctaacgatg gtgagttttt ttctaattct ctagctttca
      841 tatatttttt taattatgag ccttcatggg aaggctcggt taatactatt cctctagatc
      901 gggaatatgg caccaatggg taacctcccc gaatacctta taagcgtcct ccccgtaaac
      961 gataaagccg ctatccttac catgtaaata agcggtggct ttgcctccgt actcacctct
     1021 aaccaagact atgtcttgat tttccggcaa tcgttccttc acgcttaccc acggggattg
     1081 ctttgcctgc cattcggcac cggctataaa tccctgataa tacgcaggga atgcactacc
     1141 gctactcctg ctttcagcga ataaatgagc cgcttcttct acagtctgcc ccgtatcaat
     1201 cttgctcatt gtcttttcct ctttttataa cttcaatatc ttcaatctgt atatacgcta
     1261 taacatagca atattcatca ttttcattat cttccaccaa aagattaaat cgattccccg
     1321 acaaatcata tatcggcata aatacatctt cgatatatgc ttcaatatac ttgcctttgt
     1381 tgtttacccg aacaaaatcc ccctttttga atggtagaga atttacgtat tcaagtttta
     1441 gtttctcaat ctgattattc agatcttgaa atcgttgttg gtattcttgt tttgtcataa
     1501 cttatatata ttttccatat caatatctct tttcatgatt ttaaataata tttaaatatt
     1561 gctaaccaca cattgttagt acat
//
