LOCUS       NZ_OY725798             1664 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 53, complete sequence.
ACCESSION   NZ_OY725798
VERSION     NZ_OY725798.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725798.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..1664
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="53"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(107..1552)
                     /locus_tag="UNS60_RS18370"
                     /old_locus_tag="PDTSDC17_04561"
     CDS             complement(107..1552)
                     /locus_tag="UNS60_RS18370"
                     /old_locus_tag="PDTSDC17_04561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_076611265.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /GO_process="GO:0006313 - DNA transposition [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS4-like element ISBf8 family transposase"
                     /protein_id="WP_005642186.1"
                     /translation="MEAKIEKISELSKLLSVKTRMSDDLFHLFGKFGIGHLLSRLSLEK
                     QDGVSASELLLSLCLFRIVGESIHSICKHKIYELSNHGKNCFYRMMIRPQMDWRRLMNH
                     FALRYMCLLRKYGEVPQSDTTTCFIIDDTVLEKSGVRMEGISRVFDHMKGRCVLGYKLL
                     LCAFFDGKTTIPFDFSLHQEKGKQGNYGLTRQQLKKAYHTKRNTGNPDYKRFQECKMSK
                     LEVAMDMLRRGWKMGLHAKYVITDSWFTCEQLMTCVRSIGKGAMHFVGLAKMGKTKYTI
                     SGKKKNAAELIATYERERGKNCRKYKCRYIQLNGNLGDIPIRIFLIKYGRNSAWNVLLT
                     TDTTMSFVKAFEVYQIRWNIEVMNKETKQYLGLGGYQGCDFNGQIADATLCYLTYTVMA
                     LEKRFTEYQTMGELFSDMEGDLMALTLWKRVLTCIERILRILGEILGMTPQYLMATISG
                     NDKEMSKILVMAEALEKWDEVCG"
                     /name="IS4-like element ISBf8 family transposase"
ORIGIN
        1 actaaagttt cccacccctt aaaacactaa cttttctcat tttcctttgt ctgtcttccc
       61 ccatatccat tgactgttaa cacatgccta acagaagtta tgcagactat ccacatactt
      121 cgtcccattt ttccaacgct tcagccatta caaggatttt gctcatctct ttgtcgtttc
      181 cgctgattgt agccataagg tattggggcg tcattccaag tatttctcct aaaatgcgaa
      241 gaatgcgttc gatgcaggta agaactcgct tccataacgt gagtgccatg agatcaccct
      301 ccatatccga aaagagttcg cccatggttt gatattctgt gaatctcttt tccaaagcca
      361 tgacggtata tgtaaggtaa cacagcgttg cgtcggctat ctgaccatta aagtcacaac
      421 cttgataacc tcctaatccg agatattgct tagtctcctt gttcatcacc tctatgttcc
      481 atctaatctg atacacttca aaggctttta cgaaagacat cgttgtatcc gtggtgagca
      541 gaacgttcca tgcggagttt ctaccatact tgatgaggaa gattctgata ggtatatctc
      601 ctaagttgcc gttgagctga atatatcgac atttgtattt acgacagttc tttcctcgtt
      661 cacgttcata ggtggcaatg agttctgcag catttttctt tttgcccgat atagtgtatt
      721 ttgtctttcc catttttgca agtccaacaa agtgcattgc ccctttacct atgcttctaa
      781 cacatgtcat aagttgctcg caggtgaacc aactatcggt aatcacatac ttcgcatgta
      841 accccatctt ccatccacgg cgaagcatat ccatggcaac ttccagctta gacatcttac
      901 actcttgaaa gcgcttataa tcaggattgc cggtgttcct cttggtgtga tatgcctttt
      961 tgagttgctg tcttgtcagc ccgtagttgc cttgcttccc cttttcttga tgtagtgaaa
     1021 aatcaaaggg tatagttgtc ttgccgtcaa agaaggcaca aagtaacagc ttgtagccca
     1081 atacgcatct gcctttcata tggtcgaaaa cacgactgat accctccatc ctcacaccac
     1141 tcttctcaag tacggtgtca tctataatga aacatgtagt ggtatctgat tgaggaactt
     1201 cgccatactt acgcaatagg cacatataac gcagtgcaaa gtggttcatc aatcgtctcc
     1261 aatccatctg tgggcgaatc atcatgcgat agaaacagtt cttaccatga tttgaaagct
     1321 catatatctt atgtttgcat atactatgga tgctctcgcc cacaatgcgg aagaggcaaa
     1381 gagagaggag caactccgaa gccgaaactc cgtcctgttt ctccaatgaa aggcgagata
     1441 ataggtgacc gatgccaaac ttgccaaaaa gatgaaataa atcatcactc attcgggttt
     1501 taacactcaa aagtttggat aactcactta ttttctctat ttttgcttcc ataacagttt
     1561 tgttgtcttg tctttaaaat cagttcttta gcgattacta atttacaaag aaaattcgac
     1621 aaactgttat ttttctatct atttatttgg gtgggaaact ttag
//
