LOCUS       NZ_OY725797             2307 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 52, complete sequence.
ACCESSION   NZ_OY725797
VERSION     NZ_OY725797.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725797.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2307
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="52"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(31..441)
                     /locus_tag="UNS60_RS18345"
                     /old_locus_tag="PDTSDC17_04556"
     CDS             complement(31..441)
                     /locus_tag="UNS60_RS18345"
                     /old_locus_tag="PDTSDC17_04556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_214504922.1"
                     /translation="MRLDAYDKFPTGMREYLKAYGWHFSKAMCDFAVSRMWTEDDSGER
                     KETRGYTKEDVDKILRQYGIKLNKSEGYDYVYVANMCLFDFQSRLPLNEQGLARYIKAV
                     IDDPDGYDGMVFTRYYADCIGSGTPIIWEEMM"
                     /name="hypothetical protein"
     gene            complement(489..794)
                     /locus_tag="UNS60_RS18350"
                     /old_locus_tag="PDTSDC17_04557"
     CDS             complement(489..794)
                     /locus_tag="UNS60_RS18350"
                     /old_locus_tag="PDTSDC17_04557"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_214504921.1"
                     /translation="MGTYSRKLKELIEEFDAMEDEDMLELAKEAYKLGCKEGKRKAMEG
                     YGNRMEEDDDDEFEDDDEFREMWERGGYGNRGGGRGSSSGGYGNRRGVRGSGRGRR"
                     /name="hypothetical protein"
     gene            complement(796..1341)
                     /locus_tag="UNS60_RS18355"
                     /old_locus_tag="PDTSDC17_04558"
     CDS             complement(796..1341)
                     /locus_tag="UNS60_RS18355"
                     /old_locus_tag="PDTSDC17_04558"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_154397911.1"
                     /translation="MFKNQRQGNPLYILHKGNTPFCEVGSIVSVSPPRPENPNFNMYGP
                     QAKIVVDIKAKVGEDNVSFSNVLSDVTITDYPTTNGEKLVVSCDLGALNTEINAMMQQS
                     RQALDSIDYHKSVIEGCEKMLVILNPEFAREKERESEIANMRNEMSDLKEANARLVAMM
                     EQLVGSVNGNNNNNKKTE"
                     /name="hypothetical protein"
     gene            complement(1395..1739)
                     /locus_tag="UNS60_RS18360"
                     /old_locus_tag="PDTSDC17_04559"
     CDS             complement(1395..1739)
                     /locus_tag="UNS60_RS18360"
                     /old_locus_tag="PDTSDC17_04559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004327664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_057319714.1"
                     /translation="MAFISPFIMANKNGIPRLESTGVTVGTTNVRFSFRNHPFLSAPFS
                     GLILFRLAQPIPAGTTGTLPVVFDTNGSTQALTTINGADVTASDITGTGIYLCYYESGN
                     NTLQIMTGVV"
                     /name="hypothetical protein"
     gene            complement(1768..2307)
                     /locus_tag="UNS60_RS18365"
                     /old_locus_tag="PDTSDC17_04560"
     CDS             complement(1768..2307)
                     /locus_tag="UNS60_RS18365"
                     /old_locus_tag="PDTSDC17_04560"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_320643416.1"
                     /translation="MSSQQIINAVQSGNNQLLSQIAECCCTVNNNITKMGYENQLASCN
                     QTNTLVNTMNNNTLTLRDSGLQNTRDIINEVRDFKNLYQQDKMDRLTAENLALKGQISQ
                     SNQNAYFAATLQAQTAPLGNALGDLSSRLAKIECNQPEVAKVPYSPVVGIPTCVAAQYG
                     LGLGLGNWGNFGNGWG"
                     /name="hypothetical protein"
ORIGIN
        1 tgatcctcag tatgtagccc cagcctccca tcacatcatc tcctcccaga ttataggcgt
       61 accagatcct atgcaatccg cataatatct agtgaacacc atgccatcat aaccgtctgg
      121 atcatctatc acggccttga tatatctcgc tagtccttgc tcattcaatg gcaatctaga
      181 ttgaaaatca aacaggcaca tattggctac atagacatag tcatatccct cggacttgtt
      241 tagcttgatg ccgtattgcc tcaatatctt atccacgtcc tccttggtat aacctctagt
      301 ctcttttctc tctccggaat cgtcctccgt ccacattcgg gaaacggcga aatcgcacat
      361 ggccttggag aaatgccagc catacgcctt taagtattct ctcattcccg taggaaattt
      421 atcatatgcg tctaatctca tgatctgtag atttaagaaa ggggcgaaag cccctctcat
      481 tattattatt acctacgtcc acgtccggaa cctcttactc cccgacgatt accataacct
      541 ccactagatg atccacggcc accgccacga ttgccgtagc cgccacgttc ccacatctca
      601 cggaactcgt cgtcgtcctc gaactcatca tcatcgtctt cctccatacg gttgccatag
      661 ccttccatgg ccttccgctt tccttcctta cagccaagct tataggcctc cttagccagt
      721 tccaacatat cctcgtcttc catggcgtcg aattcctcga tcagctcctt cagttttctg
      781 ctatatgttc ccatatcact ctgttttttt attattgtta ttattaccgt tcacggaacc
      841 gacaagttgc tccatcatgg caaccaacct tgcgttagcc tccttcagat cggacatctc
      901 gtttctcatg ttagcgatct cactctccct ctccttctcc cgggcaaact cagggttcag
      961 tattaccagc atcttctcgc acccctcaat cacggattta tggtaatcga tgctgtcaag
     1021 tgcctgtcgg ctttgctgca tcatggcgtt gatctccgta ttcagggcac ctagatcgca
     1081 tgacacaacc agtttctccc catttgtagt ggggtaatcc gtaatggtaa cgtcggacaa
     1141 gacgttagag aagctgacgt tgtcctcacc taccttggcc tttatgtcca ccacgatttt
     1201 agcttgcgga ccatacatat tgaaatttgg attctccggt ctcggagggg acacgctgac
     1261 tatgcttcca acctcacaaa aaggcgtatt ccccttatga aggatatata aaggattccc
     1321 ttgtctctga ttcttgaaca tatttattgg tttttatgag agccggatcg ctccggtctc
     1381 tcgttgatac tctctcacac cactcccgtc attatctgga gcgtattatt gcccgactca
     1441 tagtaacaca agtagattcc ggtgccggtt atatcggatg ccgtgacatc tgcgccgtta
     1501 atggtcgtta gcgcctgcgt ggagccgttc gtgtcaaaca ctaccggcaa cgtcccggta
     1561 gtaccagccg ggataggctg ggccagacgg aacaagatca acccgctaaa cggggctgac
     1621 aggaacgggt gattgcggaa ggagaaacga acgttggtcg tcccgaccgt aacgcccgtg
     1681 ctctccaaac gtgggatacc gttcttgttc gccattatga aaggactaat gaatgccata
     1741 actctttatt tttaggttat taactcatta tccccatccg ttgccgaagt ttccccagtt
     1801 accgagacct aggcctaatc cgtactgggc ggccacgcaa gtgggtatgc ctaccacggg
     1861 ggagtaagga acctttgcca cctccggctg gttacactcg atcttggcca atcttgagct
     1921 caaatcaccc aaggcgttac ctagaggggc ggtctgcgcc tgtagagtag cggcgaaata
     1981 ggcgttctgg ttgctttggg agatctgtcc tttcaaggct aggttctccg ccgtcaagcg
     2041 atccatcttg tcttgttgat acaagttctt gaaatcacga acctcgttga tgatatcacg
     2101 ggtgttctgc agacctgagt cacggagagt caacgtgttg ttgttcatcg tattcaccag
     2161 cgtgtttgtc tggttgcagc tagccaattg gttctcgtag cccatcttag tgatgttgtt
     2221 gttaaccgtg cagcagcact cggcgatctg gctcaataat tgattgttac cactttggac
     2281 ggcgttaatg atttgttggg aactcat
//
