LOCUS       NZ_OY725796             2394 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 51, complete sequence.
ACCESSION   NZ_OY725796
VERSION     NZ_OY725796.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725796.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2394
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="51"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(31..441)
                     /locus_tag="UNS60_RS18320"
                     /old_locus_tag="PDTSDC17_04551"
     CDS             complement(31..441)
                     /locus_tag="UNS60_RS18320"
                     /old_locus_tag="PDTSDC17_04551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008617542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_154397913.1"
                     /translation="MRLDMYDDFPSGMRSYLKAYGWHFSKAMCDWAVSMMEKEDGNGKK
                     VKITPFTKEQVDEMLKKYSVDVKKKGGYDYVYAANMCKADYLGSSVPNEQYAALYVKNV
                     CDDPDAYDGIVFTRFYADCIGSGTPIIWEEMM"
                     /name="hypothetical protein"
     gene            complement(486..803)
                     /locus_tag="UNS60_RS18325"
                     /old_locus_tag="PDTSDC17_04552"
     CDS             complement(486..803)
                     /locus_tag="UNS60_RS18325"
                     /old_locus_tag="PDTSDC17_04552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007847384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_211744473.1"
                     /translation="MGTYSRKLRELIEEFDAMEDEDMLELAKEAYKLGCKEGKRKAMEG
                     YGNRMEEDEDDEFEDDDEFREMWERGGYGNRGGGRGSSGGGYGNRRGVPGTGRYSRRYR
                     R"
                     /name="hypothetical protein"
     gene            complement(805..1353)
                     /locus_tag="UNS60_RS18330"
                     /old_locus_tag="PDTSDC17_04553"
     CDS             complement(805..1353)
                     /locus_tag="UNS60_RS18330"
                     /old_locus_tag="PDTSDC17_04553"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_211744474.1"
                     /translation="MTFKELREGNQYFILHKTDKPFCEVGSVVETKNLRPKPQNFNTGY
                     PPLQPEMVIDLTVKVGDDMVKLSSVPADKSIADYKPDNGEKLVLACDLAMMNQEISSML
                     QNSRQVLDSIEAHKSIIDNCELMLTQLNPQFKKEKEQEDKIANLESEIAEMKRLFGGGI
                     EEIKQILFDKQGNNNKKSG"
                     /name="hypothetical protein"
     gene            complement(1399..1920)
                     /locus_tag="UNS60_RS18335"
                     /old_locus_tag="PDTSDC17_04554"
     CDS             complement(1399..1920)
                     /locus_tag="UNS60_RS18335"
                     /old_locus_tag="PDTSDC17_04554"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_211744475.1"
                     /translation="MTARLNVRTCVPRVDQNGIYVVSTTGKAVSTPDGEEPRIDFGLNP
                     FVWCALPDVGVLIWRVRHPVTTTEASYPVNVIVPNGYATTVPSQGVQAGTSRIPVVDHH
                     NVQVTGNDVNVPVDSANGSPMLGGYTEHIVWFNKPQGIFRLLGVKASSNPTPSAQVGDT
                     RAEANVTRNK"
                     /name="hypothetical protein"
     gene            complement(1933..2343)
                     /locus_tag="UNS60_RS18340"
                     /old_locus_tag="PDTSDC17_04555"
     CDS             complement(1933..2343)
                     /locus_tag="UNS60_RS18340"
                     /old_locus_tag="PDTSDC17_04555"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_320643415.1"
                     /translation="MSQIASCCCDVRNAITTQGYENQLAIVNQTNTLSGNANTQFNILG
                     AKIDAQTQIINDKFCQLEMREMQNKIDTLRQEKSALELGISQAAQTANIVSQLKAPCPI
                     PAYFVPNPNCCNPMQVQVTREGCGCAYNGGLV"
                     /name="hypothetical protein"
ORIGIN
        1 agatcctcag tatgtagccc cagcctccca tcacatcatc tcctcccaga ttataggcgt
       61 gccggacccg atgcaatcag cgtagaaccg ggtgaacact atcccgtcgt aagcgtccgg
      121 atcgtcgcag acgttcttga cataaagagc ggcgtactgc tcgttaggca cggaggagcc
      181 aaggtaatcg gccttgcaca tgttggcggc gtaaacataa tcgtatccac cctttttctt
      241 cacgtcaacg ctatacttct tcagcatctc atccacctgc tccttggtga aaggggttat
      301 cttgaccttc ttcccgtttc cgtcctcctt ctccatcatg gatacggccc aatcgcacat
      361 ggccttggaa aaatgccagc catacgcctt caggtaggat cgcatcccgg aagggaaatc
      421 atcatacata tctagtctca tattcctctg ttttttagga gggggaaacc ggtcccccct
      481 catggttatc tacgatatcg tctcgagtag cgtccggtgc ccggcacccc acggcgattg
      541 ccataaccgc caccggatga tccacgaccg ccgccacggt taccgtagcc gccacgctcc
      601 cacatctcac ggaactcgtc gtcgtcctcg aactcatcgt cttcgtcttc ctccatgcgg
      661 ttgccatagc cttccatggc cttccgcttt ccttccttac agccaagctt ataggcctcc
      721 ttcgccagtt ccaacatatc ctcgtcttcc atggcgtcga attcctcgat cagctctctc
      781 agttttctgc tatatgttcc catattatcc tgatttttta ttgttattac cttgtttatc
      841 aaaaagaatc tgcttaattt cctcgatacc gccaccaaac aatcttttca tctccgcaat
      901 ctcgctctca agattggcaa tcttatcctc ctgctctttc tccttcttga actggggatt
      961 gagttgggta agcataagct cgcaattatc tatgatggac ttatgggcct ctatgctatc
     1021 caatacctgt cggctattct gcaacatgga gcttatctct tggttcatca tggccagatc
     1081 gcacgccaat accagtttct cgccgttgtc aggcttatag tccgctatgg acttatcggc
     1141 cggtacggaa gatagtttaa ccatgtcgtc gcctaccttg accgttagat cgataaccat
     1201 ctccggttgc aagggagggt agcccgtatt gaaattttgc ggtttaggtc tcaggttttt
     1261 agtttccacc acgctaccta cctcgcagaa aggcttgtct gtcttatgaa ggataaaata
     1321 ttggttgcct tctcttagtt ccttaaatgt cattttcttc ttgatttaaa gagaaccggg
     1381 tattatcccg ggttctcgtt atttatttct cgttacgttc gcctccgctc tggtatcgcc
     1441 cacttgggcg gacggagtag gattgcttga tgccttaacc cctagaagac ggaatatccc
     1501 ctgaggctta ttgaaccaaa caatatgctc tgtataacct cctaacatag gcgatccgtt
     1561 agcggagtcc acagggacgt taacgtcatt ccctgtcacc tgtacgttat ggtggtcaac
     1621 aaccggaatc cggctagtac ccgcctgaac gccttgtgac gggactgtcg tggcgtatcc
     1681 gttgggaact ataacgttca cgggataaga agcctccgtg gtcgtaaccg gatgtctaac
     1741 tctccagatc aataccccaa catctgggag ggcgcaccat acgaacggat tgagtccgaa
     1801 atcgatcctt ggttcctctc catcgggggt ggatacggcc ttgcccgtcg ttgacacgac
     1861 atagatgccg ttctggtcaa ccctcgggac gcaagtcctt acgtttaatc tcgctgtcat
     1921 gacagggcct ccttatacta agcctccatt atacgcgcat ccgcacccct cacgggttac
     1981 ttgtacctgc atcgggttgc aacagttggg attcgggacg aaataggccg gtatcggaca
     2041 tggagccttt agctgggaca cgatgttggc ggtctgtgcg gcctgagaga ttccaagctc
     2101 tagggctgac ttctcttgac gcaacgtgtc gatcttgttt tgcatctctc tcatctccaa
     2161 ctggcagaac ttgtcattga tgatctgggt ttgagcgtca atcttggctc caaggatgtt
     2221 aaactgcgta ttggcgttac cggacaaggt gttcgtctga ttgacaatgg ccaattgatt
     2281 ctcataacct tgcgtagtga tagcgttacg aacgtcgcag cagcaagagg cgatctggct
     2341 caacaattgg ttgttaccgg attgaacggc gttgatgatt tgctgagagg ataa
//
