LOCUS       NZ_OY725795             2471 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 50, complete sequence.
ACCESSION   NZ_OY725795
VERSION     NZ_OY725795.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725795.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2471
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="50"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            join(2332..2471,1..>1)
                     /locus_tag="UNS60_RS18310"
                     /pseudo=""
     CDS             join(2332..2471,1..>1)
                     /locus_tag="UNS60_RS18310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004324012.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase"
                     /name="DNA methylase"
     gene            681..2348
                     /gene="ltrA"
                     /locus_tag="UNS60_RS18315"
                     /old_locus_tag="PDTSDC17_04550"
     CDS             681..2348
                     /gene="ltrA"
                     /locus_tag="UNS60_RS18315"
                     /old_locus_tag="PDTSDC17_04550"
                     /EC_number="2.7.7.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004323414.1"
                     /GO_function="GO:0003964 - RNA-directed DNA polymerase
                     activity [Evidence IEA]"
                     /GO_process="GO:0000373 - Group II intron splicing
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group II intron reverse transcriptase/maturase"
                     /protein_id="WP_004323414.1"
                     /translation="MNENKTSCAPADNQQTLWDRIDWTKAELAVRKLQARIVKAQKEGR
                     YNKVKALQWTLTHSFYAKALAVKRVTSNGGGNTPGVDMETWEKPEAKTQAISELKRRGY
                     QPKPLRRVHIKKSNGKLRPLGIPTMKDRAMQALYLMALEPVSETTADSRSYGFRKERRC
                     MDAVMQCHNILRKGYSPEWILEGDIKGCFDHISHEWLLANIPMDKAILRKWLKCGYIFN
                     KQMFPTEEGTPQGGIISPTLANMTLDGLQKVLAEKYKRVRIKGKLYSPMVNLVRYADDF
                     IITCENRETLEKEIKPLVADFMSERGLTLSEEKTVITNIRDGFDFLGFNIRKFGNEILT
                     KPTKKAEKRFMENIRKVTKGHKGCKQESLIRMLNAKIRGWGAYYQHGATRDSFHRIDHQ
                     IFLALWQWAKRRHSKKGKQWIKDRYWHNIRGNSWTFAAKFKKSNGKEDQLTLLKLASSF
                     PFLQYTQIKGDMNPFDADCRLYFNKRMKSKMLVTLKGRKSLLYLWEKQGRKCPICGEPI
                     DTHKAWNVMPTVQDGRKCNLLVHDECFKLSRKNNGNKK"
                     /name="ltrA"
ORIGIN
        1 tgggtgcgac atgaagtcgc atagataatt gttggaatga tacttacggg tatcagcttt
       61 aacccgctgt tccgtcagcg gtagcctacc gaccgatgca ccttaatgtt gtattaagcg
      121 gtcgggacga agtacacttt cgcaagacaa gacagaaccg tgaggggaag tcaagtacgg
      181 ttagtatcat accgtagagt ggcgaggctg gatagtatgg ttagcgcaag cgaactgtta
      241 gtaaacttcg taatgtcacg aaagagtgta agatactggc acactctacc caaaagggaa
      301 gcggtcggtt aatcctctcc atggtaggat tacacggata taagcaccgc cggaggatga
      361 gacagaacct aacctatccg ttagttatct atgtggaaca tggtaagcct gtatatctcc
      421 tgtcatgtaa aaatgacagg taagctgaca gcaatgaaag ccgaatggtg tgcaggtata
      481 agataacaga aaaagcgaat gccgttctgt aatggagcgg atacggattg aaccgacatc
      541 acgggctgat gtgggcgaca tcatccgaca cgaaagtggg cagacttctg tgacgacatt
      601 aggtaggcaa tcaaaccgaa tgttgtcaaa tggtgattct ttacaattaa cttttagaac
      661 tttcaaaagg aggaaagcaa atgaacgaaa acaagacatc gtgtgcgcct gctgacaatc
      721 agcaaacact ttgggacaga atagactgga ctaaagcgga gttggctgtc agaaagctac
      781 aagcacgaat tgtaaaggct cagaaggaag gcagatacaa caaggtgaaa gccttgcagt
      841 ggacgctgac ccactctttt tacgcaaaag ccttagccgt aaagagagtt acttctaacg
      901 gaggtggcaa cacccccgga gtggacatgg aaacatggga gaaacccgaa gcaaaaacac
      961 aagcgataag cgaactcaaa cgcagaggct accagccgaa gccattgaga agagtccaca
     1021 tcaaaaagag taatggcaaa ctgcgaccgt tgggaatacc gacaatgaaa gacagagcca
     1081 tgcaagcact ctaccttatg gcattagaac cagtgtcgga aacaacagcc gactcacgtt
     1141 catacggttt ccgcaaggaa cgccgctgta tggacgcggt aatgcaatgc cataacattc
     1201 tccgaaaagg ctattctccc gaatggattc tggagggtga cataaagggg tgcttcgacc
     1261 atatcagcca tgaatggctg cttgccaaca tccctatgga caaggcaata ctccgaaaat
     1321 ggttgaaatg cggctatatc ttcaacaaac agatgttccc gacagaggag ggaacgccac
     1381 aaggtggcat tatctctccc acgcttgcca atatgacatt ggacggattg cagaaagtcc
     1441 ttgcagagaa atataaacga gttagaatca aaggtaagtt atattcgcca atggtgaatc
     1501 ttgtccgtta cgctgatgac tttataatta cctgcgagaa ccgtgaaaca cttgaaaagg
     1561 aaatcaagcc attggtagcc gactttatgt ctgaaagagg tctgacctta tcagaagaaa
     1621 agacggtgat aaccaatatc cgtgacggtt tcgattttct cggtttcaac atccgcaaat
     1681 tcggcaatga aatattgacc aagccgacca agaaagccga aaaacgcttt atggagaata
     1741 tccgtaaggt gacaaaaggt cataagggtt gcaagcagga atcattaatc aggatgttga
     1801 atgctaaaat tcgaggatgg ggagcatatt atcagcatgg ggcgacacgt gattcttttc
     1861 acagaatcga ccatcagata tttctcgcct tgtggcaatg ggctaaacgc cgtcattcca
     1921 agaaagggaa acagtggata aaagaccgct attggcacaa tatccgaggg aacagctgga
     1981 cttttgcggc taagttcaag aaatcaaacg gcaaagaaga ccaacttacc ttgttgaaac
     2041 tggcatcttc gtttcctttt ctgcaatata cgcagataaa gggggacatg aatccgtttg
     2101 acgcagactg ccgcctgtac ttcaataaaa gaatgaagtc aaagatgctt gtgacgctga
     2161 aaggacgtaa atccctgctt tacctatggg aaaagcaagg tcggaaatgt ccgatatgtg
     2221 gtgaaccgat tgacacgcat aaggcatgga atgtaatgcc gaccgtacaa gacggacgga
     2281 aatgcaatct gttggttcat gatgaatgtt tcaaattatc ccgtaaaaac aatggaaaca
     2341 agaagtagga tgagccggtc tctgcacacg aacagagact ttgaaaagct tgagccgtat
     2401 gaggggaaac cctcacgtac ggttctgagg ggggaagagg gcagtaatgc ccttgaccta
     2461 cccgatcgac c
//
