LOCUS       NZ_OY725794             2638 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 49, complete sequence.
ACCESSION   NZ_OY725794
VERSION     NZ_OY725794.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725794.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="49"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            24..458
                     /locus_tag="UNS60_RS18295"
                     /old_locus_tag="PDTSDC17_04547"
     CDS             24..458
                     /locus_tag="UNS60_RS18295"
                     /old_locus_tag="PDTSDC17_04547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004294671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_117922931.1"
                     /translation="MMQRRKHMMSREKFISVLFRQQQSGLSIADFCENEGYSRSRFYLW
                     KQKYGITERELLAEASRLGVKDSFVPIVINGDTPSPGISHETPLPSPQPSVPSPLKGKD
                     SSEISLELPNGLKLKFKGSSGCEAALNLISKIYNANVLPK"
                     /name="hypothetical protein"
     gene            463..807
                     /gene="tnpB"
                     /locus_tag="UNS60_RS18300"
                     /old_locus_tag="PDTSDC17_04548"
     CDS             463..807
                     /gene="tnpB"
                     /locus_tag="UNS60_RS18300"
                     /old_locus_tag="PDTSDC17_04548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008775173.1"
                     /note="TnpB, as the term is used for proteins encoded by
                     IS66 family insertion elements, is considered an accessory
                     protein, since TnpC, encoded by a neighboring gene, is a
                     DDE family transposase; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family insertion sequence element accessory
                     protein TnpB"
                     /protein_id="WP_234201988.1"
                     /translation="MRYFLCPGYTDMRKGMFTLCGLVHERMGGDIRSGDVFIFYNRFRT
                     KLKLLHAEPGGLVLYEKLLEEGTFKIPAYDPATRSYPMTWSDLVVMVEGINEDVSKGRQ
                     RRLSNLKKHW"
                     /name="tnpB"
     gene            888..2474
                     /locus_tag="UNS60_RS18305"
                     /old_locus_tag="PDTSDC17_04549"
     CDS             888..2474
                     /locus_tag="UNS60_RS18305"
                     /old_locus_tag="PDTSDC17_04549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008776790.1"
                     /GO_function="GO:0004803 - transposase activity [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IS66 family transposase"
                     /protein_id="WP_122334222.1"
                     /translation="MAKEDATGQAVESSMEQLQDINRKQSEIISAQARTIEELRGTIVE
                     LNASLAWLKRKVFGKMSEKCKPVDNGDPKLPFDYGDLERIEAEIEEARSRAAEQITVPK
                     SRAANKTPRRNRVVMDNLPVVTVVIEPENVDLSRYVKIGEEHTRTLEMKPGYLYVKDTV
                     RPTYALKNEMEAVDNGGKAVITAPMPLMPIYKGMPGASMLAEVLLQKYEYHVPFYRQVK
                     QLEHLGVKLSRNTLDGWFRPVCELLRPLYLKLRKKVLAADYLQVDETTLPVINHERHKA
                     AKEYIWIVRAAVPRLLFFHYDNGSRSQKVAVRLLKNFKGYLQSDGHPIYDAFEDREDVC
                     LCGCLAHIRRHIELCKEENPEYAMQGLKFIQDMYNVEYMADKQELPYEGRAELRQRLSE
                     PILDSFELWLKNTYPKVLKRSLMGKAIAYAYSLLPRMKPYLHDGRIFIDNNRCENALRP
                     LVISRKNMLFCGNHEAAENTAIICSLLGSCKERGVNPREWLNDVISKLPYYLAPKSDRD
                     LKELLPDVWRK"
                     /name="IS66 family transposase"
ORIGIN
        1 ttgctacaaa aaaataatat cctatgatgc agcgacgtaa acacatgatg agcagagaaa
       61 aatttatctc cgttcttttc cgtcagcagc agagtggttt gtccattgct gatttttgtg
      121 agaatgaagg ttatagccgt agtagattct atctttggaa acaaaaatac ggtataacgg
      181 agcgggagtt attggcagaa gcctcccgct taggggttaa agacagcttt gtccccatag
      241 taatcaatgg cgacacgcca tcccccggta tatctcacga gactcccctg ccatctcccc
      301 agcctagcgt cccctctccc ttgaaaggaa aggacagctc tgaaatatcc ttggaattac
      361 ccaacggatt gaagttgaag tttaaagggt cttccggctg tgaagctgcc ctgaatctga
      421 tctctaaaat atataatgcc aatgttctgc ctaaatgaca gcatgagata tttcctatgc
      481 cccggttata cggacatgag gaaaggtatg ttcactcttt gcggccttgt gcatgagagg
      541 atgggaggcg acatcagaag tggggacgta ttcattttct acaaccgttt ccggaccaag
      601 ctaaaattgc tccatgccga accgggcggt ctggtccttt acgagaaact gcttgaagaa
      661 ggcaccttca agatacccgc ctatgatcct gccacccgtt cttaccccat gacctggagt
      721 gacctggtcg ttatggtgga aggcatcaat gaagatgtca gcaaaggcag gcaaagacgg
      781 ctttccaatt tgaaaaagca ttggtaaaca gttgtaaaca aacagcttga aggcttgttt
      841 ttcttatagc ttttcgctat ctttatatca tcaaaaaaag atattgaatg gcaaaagaag
      901 atgcaaccgg acaagctgtg gaatcctcaa tggaacagct gcaggatatc aaccgtaaac
      961 agagtgagat catctcggcc caggcaagga ccatagaaga gctccggggt acgatagttg
     1021 agctgaacgc ctccctggca tggctgaaga ggaaggtgtt cggaaagatg agtgagaaat
     1081 gcaagcctgt cgataacgga gacccgaagc tcccttttga ctatggcgac ctggaacgga
     1141 tagaggcgga aatcgaagag gcccggagca gggcggctga acagattacc gtccccaagt
     1201 cccgggccgc caataaaacg ccacgccgta accgggtcgt catggataac cttccggttg
     1261 taacagtcgt catcgaaccg gagaatgtcg atttaagcag atacgtcaag ataggcgagg
     1321 aacataccag gacccttgag atgaaacccg gctacctcta tgtgaaagac acggtacgtc
     1381 ccacatatgc cctgaaaaat gaaatggagg ccgttgacaa cggaggaaag gctgtaataa
     1441 ccgctcccat gccactgatg cccatatata aaggcatgcc cggggcttcc atgctcgctg
     1501 aggtcctttt acagaagtac gaatatcatg tcccgttcta ccgacaagtg aaacagctgg
     1561 aacatctggg tgtgaaactg tccagaaaca cattggacgg ctggttcaga ccggtctgcg
     1621 aacttctcag accactttat ctgaaactca ggaagaaagt attggccgca gattacctcc
     1681 aggttgacga gaccacgctt ccggttataa accatgagag gcataaagcc gcaaaagaat
     1741 acatctggat agtccgagcg gctgtgccgc gtctgctctt cttccattac gacaacggat
     1801 cgcgttcaca aaaagttgcg gtcaggcttt tgaaaaactt caaaggatat ctccaaagtg
     1861 acggccatcc catttatgac gcctttgagg atagggagga cgtgtgcctg tgtggctgtc
     1921 tcgcacatat ccgcaggcat atagagctgt gcaaggaaga aaatccggaa tatgccatgc
     1981 agggactcaa atttatccag gatatgtata atgtggaata catggcggat aaacaggaac
     2041 tcccgtatga aggacgtgct gaattacgtc aacgtctatc cgagccgata cttgacagct
     2101 ttgaactctg gcttaaaaac acatacccta aagttctaaa acgaagtctt atggggaaag
     2161 ccatagccta tgcctactcc ctgctgccaa gaatgaaacc gtatctccat gacggaagaa
     2221 tctttataga caacaaccgc tgtgagaatg ccctgaggcc actggtcata tcaagaaaga
     2281 acatgctgtt ctgcggaaat cacgaagctg ctgagaatac ggctataatc tgctccttgc
     2341 ttggctcatg taaggaacgt ggtgtcaacc ccagagagtg gctgaatgat gtaatcagta
     2401 aactccccta ttatttggcg cccaaatcag acagagacct gaaggaactg ctaccggatg
     2461 tatggagaaa ataatcggga cagttccggg aaaatgcagg aaaaaacggg aaaaagcgag
     2521 actgacactc aatgacaacc ctgagataag ttggtatatg gaaattgaga tgcacttaca
     2581 atggagtgca tcccactgaa aaatcgaatg cacaagatgt agttgagcag tcgcttac
//
