LOCUS       NZ_OY725793             2685 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 48, complete sequence.
ACCESSION   NZ_OY725793
VERSION     NZ_OY725793.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725793.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2685
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="48"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            complement(2..112)
                     /gene="rrf"
                     /locus_tag="UNS60_RS18285"
                     /old_locus_tag="PDTSDC17_04545"
     rRNA            complement(2..112)
                     /gene="rrf"
                     /locus_tag="UNS60_RS18285"
                     /old_locus_tag="PDTSDC17_04545"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
                     /name="rrf"
     gene            complement(196..2685)
                     /locus_tag="UNS60_RS18290"
                     /old_locus_tag="PDTSDC17_04546"
     rRNA            complement(196..2685)
                     /locus_tag="UNS60_RS18290"
                     /old_locus_tag="PDTSDC17_04546"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
                     /name="23S ribosomal RNA"
ORIGIN
        1 aagacggcgg ctacctactc ttccactgtt acgcagtacc atcggcgtga cgaggcttaa
       61 cttctctgtt cggaatggga agaggtggat ccctcgtgct atagccacct taatatcatt
      121 atcaagattt tgaccggaca tcaatccgaa gagactcgct tcgccttatc gtcttaaaat
      181 atatcaacct tcactgtgag gaaagtcccg ggctattagt accactcggc tcggacgtcg
      241 ccgcccttac acctgtggcc tatcaaggtc atcgtctata accacccttg agggagatct
      301 aatcttgagg ccggcttcgt acttagatgc tttcagcact tatccgatcc gtacttagat
      361 acccggcggt gcccctggcg ggacaaccgg taaaccagtg gtacgtccga cacggtcctc
      421 tcgtactagt gtcagagcct cgcaaatctc ctgcgcccac gatagataga gaccgaactg
      481 tctcacgacg ttctgaaccc agctcgcgtg ccactttaat gggcgaacag cccaaccctt
      541 gggaccttct ccagccccag gatgtgacga gccgacatcg aggtgccaaa ccattccgtc
      601 gatatgagct cttgggaatg atcagcctgt tatccccgga gtacctttta tcctttgagc
      661 gatggccctt ccatgcggaa ccaccggatc actatgctct agtttcctac ctgatcgact
      721 tgtatgtctc ccagtcaagc gcccttatgc cattacactc tacgaccggt taccaatcgg
      781 tctgagggca cctttagaag cctccgttac gcttttggag gcgaccaccc cagtcaaact
      841 acccaccata cagtgtcctc ctgcctagga gttagaactc aaacaaccga agggccgtat
      901 ttcaacgtcg gctccacaaa tactggcgta cctgcttcaa agcctccggc ctatcctaca
      961 catcgtctgc ccaaactcaa tgtaaagcta tagtaaaggt tcacggggtc ttttcgtccc
     1021 atcgcgggta atcggcatct tcaccgatac tacaatttca ccgagctcac ggttgagaca
     1081 gtgtccagat cattacacca ttcgtgcagg tcggaactta cccgacaagg aatttcgcta
     1141 ccttaggacc gttatagtta cggccgccgt ttaccggggc ttcaattcaa cgcttctcct
     1201 cgcggatgac atctcctctt aaccttccgg caccgggcag gtgtcaggct gtatacatca
     1261 tgtttccatt tagcacagcc atgtgttttt gttaaacagt tgcctggacc tattctctgc
     1321 gcctcgcctt acgacgagga ccctttatcc cgaagttaca gggtcaattt gcctagttcc
     1381 ttaaccgtga atcactcgag cgcctcagta ttctcaaccc gaccacgtgt gtccgtttac
     1441 ggtacgggtg ccgcatggat aagtttagcg gattttctcg ggagcatggt tacgtccata
     1501 ttacgttgcg caagcgctcc gtatactctc aggttcgact ctccccgcgg atttgcctac
     1561 gggaatcaat atctacaccc ttcaaccggc tattccgtca gccggcagga ctgtcacttc
     1621 tccgtctcca cgtcactcca tgaggcagta tgggaatatt aacccattct tccatcggcg
     1681 gcgccgttcg gctttgcctt aggtcccgac tcaccctgat ccgattagcg ttgatcagga
     1741 aaccttggtc tttcggcggg ggggtttctc gcccccctta tcgttactca tacctacatt
     1801 tgcttttcca tgcgctccaa caagggtcat ccctcatctt cgacgccgca tggaatgctc
     1861 ccctaccatg tcttgcgaca tccacggctt cggcagatcg tttatgcccg attattatcc
     1921 acgccagatc gctcgactag tgagctgtta cgcactcttt aaatgaatgg ctgcttccaa
     1981 gccaacatcc tagctgtctc tgcgatccga cctcgttagt tcaacttaac gatcatttgg
     2041 gggccttagc cggtggtctg gattcttctc ctctcggaca cggaccttag cacccgcgcc
     2101 ctcactccct gtaaatatat atcgcgcatt cggagtttat ctggacttga taggcggtga
     2161 agccctcgca tccaatcagt cgctctacct cacgatatac tataaagagg ctgcacctaa
     2221 atgcatttcg gggagtacga gctatctccg agtttgatta gcctttcacc cctaccctca
     2281 gctcattgga aagcttttca acgcttaccc atccggtcct ccagttggtg ttacccaacc
     2341 ttcaacctgg ccaagggtag atcactcggt ttcgcgtcta ccccccccga cttggcgccc
     2401 tgttcagact cgctttcgct tcggctccgt tcctcaagaa cttaaccttg ccggggaagg
     2461 taactcgtag gttcattatg caaaaggcac gccgtcacgt cattacgacg ctccgaccgc
     2521 ttgtaggcag acgggttcag ggtctatttc actcccctgc tcggggttct tttcaccttt
     2581 ccctcacggt actggttcgc tatcggtctc tcgggagtat ttagccttac gggatgggcc
     2641 ccgctgtttc acgcaagatt tctcgtgccc cgcgctactc aggat
//
