LOCUS       NZ_OY725792             2690 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 47, complete sequence.
ACCESSION   NZ_OY725792
VERSION     NZ_OY725792.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725792.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2690
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="47"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            12..212
                     /locus_tag="UNS60_RS18255"
     CDS             12..212
                     /locus_tag="UNS60_RS18255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008771437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_008782408.1"
                     /translation="MQAKPYSYLPATSDRGERVSNGLPGQTVKGRDCNTEEGGCFGNAE
                     APDDDHCNPAHVWNFSFPVYP"
                     /name="hypothetical protein"
     gene            complement(425..703)
                     /locus_tag="UNS60_RS18260"
                     /old_locus_tag="PDTSDC17_04540"
     CDS             complement(425..703)
                     /locus_tag="UNS60_RS18260"
                     /old_locus_tag="PDTSDC17_04540"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_224201642.1"
                     /translation="MNEDVIRLVVLNEEIIGYIYPRRTSYVVALEIKPGRTTSLATSVN
                     KQCMVLLSDKVRLATEQDFDDFHICFDGFRNNTMYCYNQGTEPIYLQ"
                     /name="hypothetical protein"
     gene            complement(778..1101)
                     /locus_tag="UNS60_RS18265"
                     /old_locus_tag="PDTSDC17_04541"
     CDS             complement(778..1101)
                     /locus_tag="UNS60_RS18265"
                     /old_locus_tag="PDTSDC17_04541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005868762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005868762.1"
                     /translation="MKAIRTKEVNENVKAANSCLRKAKWQAKELAVFTGEVVRLMDKEG
                     HSLQGFFNRVEFVLVDGTIKFRVVINPILECENCIMASCHEDYLYEVVSVEKFTYKNYR
                     YHL"
                     /name="hypothetical protein"
     gene            complement(1131..1856)
                     /locus_tag="UNS60_RS18270"
                     /old_locus_tag="PDTSDC17_04542"
     CDS             complement(1131..1856)
                     /locus_tag="UNS60_RS18270"
                     /old_locus_tag="PDTSDC17_04542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007844644.1"
                     /GO_function="GO:0003677 - DNA binding [Evidence IEA];
                     GO:0008170 - N-methyltransferase activity [Evidence IEA]"
                     /GO_process="GO:0006306 - DNA methylation [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="WP_005868764.1"
                     /translation="MIPKEIMKLYEKLAFSRGYEEAFRDFLDVCLYYLSVGMLAEDYRR
                     VEKRYKPYEMELFVQMFYRVSEYSEGFCDVLGDMFMECVSHGNNGQFFTPIHVADLMAC
                     MGGNRLKPKQSVCDSCCGSGRMLLSAVKKCAEENDGGRLFCYGSDIDLICVKMTVVNLM
                     MNSVPGEVAWMNTLTMQHWRSYHIDLQLIAGVWLPILKITEAGDTSFIRKLENAMEDNS
                     ELKRSIQSNARATQLTFDF"
                     /name="N-6 DNA methylase"
     gene            complement(1872..2135)
                     /locus_tag="UNS60_RS18275"
                     /old_locus_tag="PDTSDC17_04543"
     CDS             complement(1872..2135)
                     /locus_tag="UNS60_RS18275"
                     /old_locus_tag="PDTSDC17_04543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008771447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005868765.1"
                     /translation="MKWIDKMVERITRKETALNDHFCVNRHTVVCQSGMTDYVSVTIDN
                     TDGFDFDFWTKQLCFEKDCKYRSEIKAAFDKIYGTRNIECCE"
                     /name="hypothetical protein"
     gene            complement(2192..2671)
                     /locus_tag="UNS60_RS18280"
                     /old_locus_tag="PDTSDC17_04544"
     CDS             complement(2192..2671)
                     /locus_tag="UNS60_RS18280"
                     /old_locus_tag="PDTSDC17_04544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008771448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPD28 domain-containing protein"
                     /protein_id="WP_005868767.1"
                     /translation="MSRVHYLEGDYEQLVINETIDGLFSSYRIDRNSLPKGFFLYEIRW
                     DDSLSSLAEISPSVVVNHAGSFITKSPLEFDANNSIRITYTNFIEFCQFGEWAYEKLAV
                     LDCNSGNVAVISPDRRLQTTEEIEIFLSGHCGYHLSEINWMVMKGDVLFLNENDF"
                     /name="LPD28 domain-containing protein"
ORIGIN
        1 gccatacggt tttgcaagca aaaccatact cctatctccc tgccacaagt gacagggggg
       61 aacgggttag caacggactg ccgggacaaa cggtaaaagg aagggactgc aatacggaag
      121 aaggaggttg tttcggcaat gccgaagctc cggatgatga ccattgcaat cccgcccacg
      181 tttggaactt ctcttttccg gtttacccat aatcagccgc atagcggatg attacgggta
      241 aaccgggaat gagaacagtc attccgatga aggggagggt gggaaagaat actgcgtgaa
      301 cgcaaattaa tgggattacc agtaactcca agcgtttttt gctacttttt tggggtgctt
      361 gccaaaaagt agcggacagc aaaataccct cccttcccta atccaaaaga agggagaatg
      421 tgcttcattg aaggtatata ggttccgttc cctgattata acaatacata gtgttatttc
      481 tgaaaccatc aaagcatata tgaaaatcat cgaaatcctg ttccgtggcc aaacgaacct
      541 tatcactcaa caaaaccatg cattgtttat tgacagatgt agccaaagag gtagtacgtc
      601 ccggctttat ctccaatgcc accacataag aagtccttcg tggatagata tacccaataa
      661 tttcctcatt gagtacaacc aaacgaataa catcttcatt caaaacggga atattattaa
      721 ttttgcccat cattgttata atataaatca gtttataatc attaaaatac aatatcatta
      781 caaatgatac ctataatttt tataggtaaa cttttccacc gagaccacct cataaagata
      841 gtcttcatgg caagaagcca ttatacagtt ctcacattca agaataggat ttataactac
      901 acggaattta atagtgccgt ccaccagaac aaactccacc cgattaaaga acccttgtag
      961 agaatgccct tccttatcca tcagacgcac tacttcacct gtaaaaacag ccaattcctt
     1021 agcctgccat ttcgctttac gcaaacaact gttcgccgct ttgacgttct cattcacctc
     1081 ttttgttctt attgctttca taccaaaatc ctttttacat atttatcttg tcaaaaatca
     1141 aaagtcagct gcgtagccct tgcgttgctc tgaatcgacc tcttcaattc agaattatcc
     1201 tccattgcat tttcaagttt cctaataaaa gaagtgtcac ctgcttccgt tatctttaaa
     1261 ataggcaacc atactccggc tatcagctgt aaatctatat gataacttct ccaatgctgc
     1321 attgtcaatg tattcatcca tgcgacttca ccgggtacgc tattcatcat cagattgaca
     1381 acggtcatct ttacacaaat caaatctata tccgagccat aacaaaaaag ccttcctcca
     1441 tcattctctt ccgcacattt ttttacagcg gaaagtagca tcctgccgga accacagcac
     1501 gaatcacaga ccgactgttt aggtttcagc ctatttcccc ccatacatgc catcaaatca
     1561 gcaacgtgta tcggggtaaa gaactgtccg ttattcccat gactgacaca ctccatgaac
     1621 atatctccca agacatcgca aaatccttcc gaatattcag acaccctata aaacatttga
     1681 acaaaaagtt ccatttcata tggcttatat cttttttcca ctctacgata atcctccgcc
     1741 aacatcccga cagacaaata gtaaagacaa acatccaaaa aatcccgaaa ggcttcttca
     1801 tatccccgac tgaaagcaag cttttcataa agtttcatta tctcctttgg tatcatactt
     1861 ttctgacttc attattcaca acattctata ttccttgtgc catagatttt atcaaaagcc
     1921 gcttttatct ccgagcgata tttacagtcc ttctcaaaac aaagttgttt tgtccaaaaa
     1981 tcgaaatcaa aaccatcggt attatcaatc gttacagaaa cataatcagt cataccactc
     2041 tgacatacaa ccgtatgccg atttacacaa aagtggtcat ttaaagcagt ttcttttcgg
     2101 gtaatgcgtt ctaccatctt atctatccac ttcatactta taatatttta tgtaattgcc
     2161 ccattccaag aggcagttac ggttatactc attaaaaatc gttctcgttc aaaaacagca
     2221 catcgccttt catcaccatc caattaatct cactcagatg atagccacaa tgcccactca
     2281 aaaaaatctc aatctcttca gtggtctgca atctcctgtc tgggcttatc accgcaacat
     2341 taccggaatt acaatccaat acagccagtt tctcataagc ccactcacca aactggcaga
     2401 actcgataaa attggtatag gttatccgta tgctattgtt tgcatcaaat tcaaggggtg
     2461 actttgtaat gaatgaacct gcatgattca ccaccacaga ggggctaatc tctgccaatg
     2521 aagataagct gtcatcccat ctaatctcat aaaggaaaaa tccttttggc aatgaattgc
     2581 ggtctatacg ataactggaa aaaagaccgt ctatcgtttc attaataact aactgttcat
     2641 aatctccttc taaatagtgt actcgtgaca taactcgttg ttttttggga
//
