LOCUS       NZ_OY725791             2784 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 46, complete sequence.
ACCESSION   NZ_OY725791
VERSION     NZ_OY725791.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725791.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..2784
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="46"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            82..672
                     /locus_tag="UNS60_RS18245"
                     /old_locus_tag="PDTSDC17_04538"
     CDS             82..672
                     /locus_tag="UNS60_RS18245"
                     /old_locus_tag="PDTSDC17_04538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008670455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_008670455.1"
                     /translation="MENKKVLKLTDFQKNEENPFMKQAIEGIENHVVKKYKSSTGSDKK
                     AVVAVADTDTGEVFKTSFIRQIEVDEEQFAKLYLANFAAFFNLSQSAIRVFGYILTCMK
                     PKNDMIIFDRRKCLEYTQYKSDKAIYKGLAELVQSEIIARGPNEYNWFINPLIVFNGDR
                     VSFTKTYVRKKTLAAQKKEEAEKRQLSLGFDEL"
                     /name="hypothetical protein"
     gene            1290..2393
                     /locus_tag="UNS60_RS18250"
                     /old_locus_tag="PDTSDC17_04539"
     CDS             1290..2393
                     /locus_tag="UNS60_RS18250"
                     /old_locus_tag="PDTSDC17_04539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004295514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid recombination protein"
                     /protein_id="WP_007572070.1"
                     /translation="MGATSIHVQAVKPGSEIHNFREKELDYVRPELSHLNESWVGDSIS
                     HRLESAKQRYFDTVGQKMQTKAAPIREGVIVIKQETTMQELQQFAAVCKERFGIEAFQI
                     HIHKDEGYMNAKQWTPNLHAHVVFDWTQPNGKSVRLSRDDMAELQTIASEALGMERGVS
                     SDRKHLSAMQYKTECAKEQLQELSNDISSALDKHKDVQNQLLQLQKELRSIETKKNVQK
                     LISKASEKFYGLIGKTVNDREKDALKAKIKALEGENEQLSDRLGKAILEKERNGTKVFK
                     AENDKEYYRQQMDNARTTSNRLRTENQELKTETKELKKELGKMKDLFNSEQLEALRHHF
                     PNISKAMEEGKDLLKQITRSRGFGMGM"
                     /name="plasmid recombination protein"
     Typing          83..662
                     /name="rep_cluster_1868"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="80.479"
                     /coverage="95.0"
                     /evalue="2.71e-121"
     Typing          1291..2390
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="95.913"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tttaaatatt cctttgtgga aaatcaaatt atactttttc accgatatat agaaagtcaa
       61 atttgcctaa atagaatgtt tatggaaaat aagaaagtac tcaaattaac cgattttcaa
      121 aaaaacgaag aaaacccctt tatgaaacaa gcaattgaag ggattgaaaa tcacgttgtt
      181 aagaaataca aaagtagtac gggaagtgat aaaaaagctg tagttgctgt tgctgataca
      241 gatacaggag aagtattcaa aacctcgttt atccgacaaa tagaagtaga tgaagagcaa
      301 tttgcaaaac tataccttgc gaattttgcc gcttttttca atctatcaca atcagctatt
      361 cgggttttcg ggtatattct aacttgcatg aagcctaaga atgatatgat aattttcgat
      421 aggcgaaaat gcttagaata cacccaatac aaatcagaca aagccatata caaaggattg
      481 gcagagctcg tacaaagtga aatcatagca agaggtccaa acgaatataa ttggttcatt
      541 aatccgttga ttgtctttaa tggggatagg gtttcattta caaaaacata cgttcggaaa
      601 aagactttag ctgcccaaaa gaaagaagaa gcagagaaac gacagttatc acttggtttt
      661 gatgaactgt aacactccat tgagtgaagc tgccgtttgg tcgctccccc tttgggggcg
      721 gggggggata gataaagttc ctctatgtaa agttataatg ggggatgaaa ggcaaggttc
      781 gctaacctta ccccgattgt ttatgcttcc cagcattcaa tctatccccg tttatgggtt
      841 tctctttcac cctacaaaga taacctcatg ggggaaaaat gtccaagaat atggggtaaa
      901 aactatcaag tcggtagaaa ataagtatct ttgaagtaca tttttagtag aggtactggt
      961 atgcctagac gaagcagata ggcaaaaata aagccgctgg ggatgtcgga tgtccgtcaa
     1021 ttaactccag cggcttgtat tttggtaact ctcccgtatc ggtcagctac cgtttggtca
     1081 gcaacaaagg tagtacttta ttgtcgcaaa tccaaatgtt ttccccttta tttgtgcatt
     1141 tacaaaacat tcactaactt cgcacctatg cagtatggtg atagcacact agcaccctaa
     1201 agggtacgtg tgtaagggga caagccccct taaccccctg tcagccggct gtcaccggct
     1261 gttatcgatt gtcacaaaaa tgttaactta tgggagcaac aagtattcat gtacaagcag
     1321 tgaagccggg gagcgagatt cacaacttta gggaaaaaga gttggactat gttcgtccgg
     1381 aacttagtca tttgaatgaa agctgggttg gagatagcat ctcccatcgg ctggagagtg
     1441 cgaaacagag atatttcgat acggttgggc agaagatgca gactaaagca gcacccatac
     1501 gggagggggt aatagtaatc aagcaagaaa ccaccatgca ggaactccag caattcgctg
     1561 cggtctgcaa ggaacgtttc ggtattgaag cgtttcaaat ccatatacac aaggacgaag
     1621 gatacatgaa cgcaaagcaa tggacaccta accttcacgc ccatgtagtt ttcgattgga
     1681 cgcagccgaa cgggaagagt gtgcgtttat cgcgtgatga catggcagaa ctccaaacca
     1741 tagcatctga agcactgggc atggaacgtg gtgtttcttc tgatcgcaaa cacttatcgg
     1801 ctatgcagta caagaccgaa tgtgcgaaag aacagcttca ggaactatcc aacgatatat
     1861 ccagtgcgtt agacaagcac aaggacgtgc aaaaccagct tcttcagctt cagaaagaac
     1921 tacgttccat tgaaacaaag aaaaacgtcc aaaaactcat ttctaaggct tcagagaagt
     1981 tttacggctt gatagggaaa acggttaacg atagggaaaa agatgcctta aaagccaaaa
     2041 taaaggcttt agagggggaa aatgaacagc tatccgatag actgggaaag gctatacttg
     2101 aaaaagagcg aaacggcaca aaggtattca aagccgagaa cgacaaggag tattatagac
     2161 agcaaatgga caatgcaagg acaaccagta accgactaag aacggagaac caagaactaa
     2221 agaccgaaac caaggaattg aaaaaagaac ttggtaagat gaaagacttg ttcaattccg
     2281 aacaactgga ggctttaagg catcatttcc caaacatatc aaaagctatg gaagagggga
     2341 aagacctact caagcaaatc accagaagca gaggtttcgg catgggtatg taaccccccc
     2401 ccgcccccaa agggggagcg accaaacggc agcttcactc aatggagtgt tacgccgttc
     2461 gggttcggaa gaaattttgc agggttcgaa aaacggttgt gtgcttattt gaaaaaaagt
     2521 ttatggtgtg ggcgctcgtc gggacgggtg gtcccgcccc ttgccgctgg gcgctccccg
     2581 accgatgatt ttttaagtag ttgattatat gccgttttta gggtataata agaacttaag
     2641 aaatagaata agttaagtag ttgatactca atatagggta ttttccatat tggaaaatct
     2701 gattttccat attagaaagt cgctctttcc tattagatgt taaaaaggaa aatatatttt
     2761 gcttttttat tgtattaatg gaaa
//
