LOCUS       NZ_OY725789             3296 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 44, complete sequence.
ACCESSION   NZ_OY725789
VERSION     NZ_OY725789.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725789.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3296
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="44"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            join(2576..3296,1..>2)
                     /locus_tag="UNS60_RS16980"
                     /pseudo=""
     CDS             join(2576..3296,1..>2)
                     /locus_tag="UNS60_RS16980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008778900.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin D"
                     /name="hemolysin D"
     gene            71..1033
                     /locus_tag="UNS60_RS16985"
                     /old_locus_tag="PDTSDC17_04535"
     CDS             71..1033
                     /locus_tag="UNS60_RS16985"
                     /old_locus_tag="PDTSDC17_04535"
                     /inference="COORDINATES: protein motif:HMM:NF015983.3"
                     /GO_function="GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]; GO:0003824 - catalytic activity [Evidence
                     IEA]; GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="WP_320643411.1"
                     /translation="MTEKVISSIIKFIEQYENIKNIHVVWFGGEPLLGIKQIESLYRKM
                     ILIPDKNYSFSIISNGFLISPDIIKLFKEMKLQHIQITLDGLKETHNKIKFTKNENDTF
                     SRTIKNIDLLASSAPEIRISIRVNMNKENSSEFITLYSFILQRYKSNPLIGIYPAFITS
                     TSSKSSSSCSLLFNRQEKSEFIQQLYYDRGIVTNLCGYPDSSFTECSIRNKHTFTIDPE
                     GYLYKCWEIIGDQKYAIAKLDSEGTIQSIDQKILNRYLYAADPLEDKTCSKCPYLPICF
                     GGCPHKRIENIFKDKHYDTCTYLKGSLKEFIKIHLSQNS"
                     /name="radical SAM protein"
     gene            1086..1349
                     /locus_tag="UNS60_RS16990"
                     /old_locus_tag="PDTSDC17_04536"
     CDS             1086..1349
                     /locus_tag="UNS60_RS16990"
                     /old_locus_tag="PDTSDC17_04536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005860508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_005860508.1"
                     /translation="MKNFKVIEKSRLNEFTMAKLIGGRPCNERNTNCGATGYSCNAAFG
                     ISDPCGNFRDGTNCPRNYGTCSPNIEVCPERRLPDLPVLMNI"
                     /name="hypothetical protein"
     gene            1354..2586
                     /locus_tag="UNS60_RS16995"
                     /old_locus_tag="PDTSDC17_04537"
     CDS             1354..2586
                     /locus_tag="UNS60_RS16995"
                     /old_locus_tag="PDTSDC17_04537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009275502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_121956146.1"
                     /translation="MKSIIISIIQILFLVSPVSASERETDYIVTFYPESGSILQNISCK
                     IVFTAEGIDKKKISITGVIINERGDTVQSVKTLLPGIGYFHIYANPGERYILKCENRDR
                     IRKNFYLPMMSENGFGLKIIENKEQWLLSVINSSREVPMKLLYLVAQSEDSIFFQKVWN
                     PKDSYLVFDKKHFPKGISSFALVDSMKNLLCGRVVLNIQEQTDFQSLPPDFRMGLLPLK
                     NQIDSDPSRLSLAWDLIAMTLEVTPIKNLSQPNPDIWKTVNLDEVSIIASMRRKQKYNG
                     LYSGSLPSSRVIYRQNIEQWHIQDMRSLLYLLESVNISWYVVDHVYKECVFIQDYGAIS
                     FQTDPVKNYEPPLFVVDDVPYQNYDILSFPVTEIEEIFILKGVDAAIYGPKGKRGIIVV
                     TTKRNKPPYEK"
                     /name="hypothetical protein"
ORIGIN
        1 gatagctcca accatggatt gcaattactc gtgttcttac tgttttgaaa attgcaaacg
       61 taatatttat atgacagaaa aggtcataag ctcaattatt aaattcatag aacaatatga
      121 aaacattaaa aatattcacg tagtttggtt tggaggagaa cctcttctag gcattaagca
      181 aatagaatca ctttatcgta agatgattct gattcccgat aaaaattatt ctttctcaat
      241 aatctctaat gggttcttga tatcaccgga tattataaaa ctctttaagg agatgaagtt
      301 acaacacata caaattacgc tagatggatt aaaagagact cacaacaaga taaaattcac
      361 aaaaaatgaa aacgatactt tttctagaac tataaagaat atagacttgc tagcatcttc
      421 tgccccagaa atacgaatta gtatacgagt aaatatgaat aaagagaatt cttctgaatt
      481 tataacttta tattctttca tattacaacg atataagagc aacccattga ttggaattta
      541 tcctgctttt ataacatcta cttcttctaa atcaagttct tcttgttctt tacttttcaa
      601 tagacaagag aaatctgagt ttatacaaca gctctactat gacagaggta tcgtaaccaa
      661 tttatgtgga tatccagatt cctcttttac agaatgttct attcgaaata aacacacatt
      721 tacaatagat ccagaaggat acttatataa atgttgggaa attataggcg atcaaaaata
      781 tgccatagca aaattggatt cagaaggaac tattcaatcc atagatcaga aaattcttaa
      841 ccgatacctc tatgccgcag atccactgga agataaaaca tgttctaaat gtccttatct
      901 tcctatttgt tttggaggtt gcccccataa acggatagaa aatatattta aagataaaca
      961 ttatgataca tgtacatacc ttaagggttc tctcaaagaa tttataaaaa ttcatttgtc
     1021 acaaaatagc tgaataagat tataataaaa aggctattta tttaaaaact taatatcatt
     1081 gcgttatgaa aaattttaaa gtgattgaaa aaagccgtct aaatgaattt acaatggcta
     1141 aacttatagg aggacggcct tgtaacgagc gtaatacaaa ttgtggagca acaggatact
     1201 catgtaatgc ggcttttggc atttctgatc catgtggaaa ttttcgagat ggtactaatt
     1261 gccctagaaa ctatggaact tgttctccca acatagaagt gtgccctgaa cgtcgcttac
     1321 ctgatttgcc ggtactaatg aatatataaa tttatgaaat ctattatcat tagtattatc
     1381 caaattcttt ttttggtatc tcccgtttct gcatcggaac gggagaccga ctatattgtt
     1441 acgttttatc ctgaaagtgg atctattctt caaaatatct catgtaaaat agtttttaca
     1501 gcggaaggaa ttgacaagaa aaagatatcc atcactggag taattataaa tgagagaggg
     1561 gatacggttc aatccgtgaa aacgctattg cccggaatag gctactttca tatttatgca
     1621 aatccaggag aaagatatat cttaaaatgc gaaaatcgag atagaatccg taagaatttt
     1681 tatttgccaa tgatgagtga aaatggcttt ggtcttaaaa taattgaaaa taaagaacaa
     1741 tggctcttat ccgttatcaa ctcttcgagg gaagtgccaa tgaaattatt atatttagtg
     1801 gcccaatcgg aagattctat ttttttccaa aaagtctgga atcctaaaga ttcttattta
     1861 gtttttgaca aaaaacattt tccaaaaggg atatcctcgt tcgctttagt agattctatg
     1921 aagaatctat tgtgtggccg tgtcgtacta aacatacaag aacagactga tttccagtca
     1981 ttgcctccag acttccgaat gggattgctt ccacttaaga accaaataga ttcagatccc
     2041 tcacgattga gtttggcctg ggatttaata gctatgacat tagaggttac tcccattaaa
     2101 aacttatcac aaccaaatcc ggatatatgg aaaaccgtaa atctcgatga agtttctatt
     2161 atcgcaagca tgagaagaaa acaaaaatat aatggattgt attctggatc tttgccatcc
     2221 agtcgtgtaa tctatcgaca aaacatagaa caatggcata tacaggatat gaggtcctta
     2281 ctttatctat tggagagtgt taacatttcg tggtatgtag tagatcatgt gtataaggaa
     2341 tgtgtgttta ttcaagatta tggagccatt tcattccaaa cggatcctgt aaaaaattat
     2401 gagccacctt tatttgtcgt tgatgacgtt ccatatcaaa attatgatat actttcgttt
     2461 cctgtgaccg aaatagaaga aatttttatc ctaaaaggtg ttgatgctgc tatatacggt
     2521 ccaaaaggga aaagagggat tatcgtagtt accaccaaac gaaataaacc accttatgaa
     2581 aaataataaa gatatagagt tacgtagcga ggaggtacag gaggtgatgg ggcaagtgcc
     2641 ggcctggatc gtacggtggg ggataacgct gttattcctc gtggtcgtag cgttgctggt
     2701 ggggagctgt ttcttcaagt atcctgacgt gatcacggct gacatgacat tgacggggca
     2761 acatcccgca acggcggtgg taacacgggc ggcgggaaag atacaggagc tgctcgtcag
     2821 ggataatcgt ccggtaaggc agggggattg gctggcggtc atagagaatc acgccgacac
     2881 ggacgatgcc atctatctgg ataaggcgtt ggaacgatcc ggaagcgacg tggatagctt
     2941 ggacaaggca ttatcaaagt acaaggagct atcgctgggt gatatgcaag cggcttactc
     3001 gggactactc tcggcgctcc atgcctgtat caattacagg gagatcgatt attatccgca
     3061 aaaaatgacc tccatccgca aacagatagc gttgtataag gcttactata acgagaccga
     3121 acggcagcgg aagaccctct cggagcaatt cgccttgaca aggcggcaat acgcccggga
     3181 ttcattattg tatagccggt ccgtgatttc ctcctacgag catgagaccg cacgggcttc
     3241 cctactgcaa agccgttatt cgctagaagg ggcggcagcc tcggctgaga atctca
//
