LOCUS       NZ_OY725788             3443 bp    DNA     circular CON 06-DEC-2023
DEFINITION  Parabacteroides distasonis strain Parabacteroides distasonis
            TSDC17.2-1.1 plasmid 43, complete sequence.
ACCESSION   NZ_OY725788
VERSION     NZ_OY725788.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA114266242
            Sequence Read Archive: ERR11836198, ERR11836210
            Assembly: GCF_963360645.1
KEYWORDS    RefSeq.
SOURCE      Parabacteroides distasonis
  ORGANISM  Parabacteroides distasonis
            Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Tannerellaceae;
            Parabacteroides.
REFERENCE   1
  AUTHORS   Beller W,Z.
  TITLE     Direct Submission
  JOURNAL   Submitted (16-AUG-2023) WASHINGTON UNIVERSITY CENTER FOR GENOME
            SCIENCES, Jeffrey I Gordon Lab, 4523 Clayton Avenue, MSC
            8510-41-4209, St. Louis, MO 63110, USA
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 12/06/2023 16:00:19
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 4,487
            CDSs (total)                      :: 4,412
            Genes (coding)                    :: 4,304
            CDSs (with protein)               :: 4,304
            Genes (RNA)                       :: 75
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1, 1 (5S, 16S, 23S)
            tRNAs                             :: 70
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 108
            CDSs (without protein)            :: 108
            Pseudo Genes (ambiguous residues) :: 0 of 108
            Pseudo Genes (frameshifted)       :: 32 of 108
            Pseudo Genes (incomplete)         :: 69 of 108
            Pseudo Genes (internal stop)      :: 22 of 108
            Pseudo Genes (multiple problems)  :: 13 of 108
            CRISPR Arrays                     :: 1
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OY725788.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3443
                     /organism="Parabacteroides distasonis"
                     /mol_type="genomic DNA"
                     /strain="Parabacteroides distasonis TSDC17.2-1.1"
                     /db_xref="taxon:823"
                     /plasmid="43"
                     /geo_loc_name="USA"
                     /collection_date="2021-09"
     gene            <1..174
                     /gene="tssD"
                     /locus_tag="UNS60_RS16965"
                     /pseudo=""
     CDS             <1..174
                     /gene="tssD"
                     /locus_tag="UNS60_RS16965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011203034.1"
                     /GO_component="GO:0033104 - type VI protein secretion
                     system complex [Evidence IEA]"
                     /GO_process="GO:1901998 - toxin transport [Evidence IEA]"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="type VI secretion system tube protein TssD"
                     /name="tssD"
     gene            357..2222
                     /locus_tag="UNS60_RS16970"
                     /old_locus_tag="PDTSDC17_04533"
     CDS             357..2222
                     /locus_tag="UNS60_RS16970"
                     /old_locus_tag="PDTSDC17_04533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007761413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-loop NTPase fold protein"
                     /protein_id="WP_217778906.1"
                     /translation="MNTLILDFLNSYADNPNPQYAVMLKGKWGCGKTHLIKQWKKRFDE
                     TADTDEEITLKPIYISTYGMDSVNDIKTAIDRELNPFFYSKTGRFIKGILKLAGKVVFK
                     TSVDLNDNSKEDGSFSATLDSLSLLQVEDDSIKGVKFLIFDDIERCLIEMKELLGFINY
                     FVEHCNCHVVIIGDENHLEKLPKAVLGEFKEKTIGKEFEIQPDIEEAIEYFLDEVPVSD
                     YLKEMRDFIIACFMCTKSDNLRVLRQCLYDFKSHLNKLPSELIEKDNIFLKNILGSFIA
                     VYAEYNNSENKGLICNWSRDCQISLLQDDNEDKQRIQHLREKYQSLNKGLIYNVLNPEY
                     VTAIIQYIITGAPLVEFIVTEIKDKQEELKPWEMLSGFFDMEQQKLESICQATIKAILD
                     KEIKDAYQLGYSIAYLSYFDAIGIFYFIQAHASLIKVRIAEMINSQTSLEELYQLRGLF
                     ISGCNYVTTDVKTPITDDIVGYFLQQMKSKINELPDQMQKALRNLTEGTVEELIIIDRL
                     PYPDKSCTYELRAIFASEDANALFDAICKLSNKGRNAFTQFLAYHYNFDYDLQDVGDRY
                     KADIPCLLKLKDLVDNEISISKGVDKLAFIRLKDVLIEAIRRCEG"
                     /name="P-loop NTPase fold protein"
     gene            complement(2486..>3442)
                     /locus_tag="UNS60_RS16975"
                     /old_locus_tag="PDTSDC17_04534"
                     /pseudo=""
     CDS             complement(2486..>3442)
                     /locus_tag="UNS60_RS16975"
                     /old_locus_tag="PDTSDC17_04534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004308668.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methylase"
                     /name="DNA methylase"
ORIGIN
        1 tattataaca ctaaggataa ttcaatcttt cgtgtcgtag agttcaaata tgcgtatatc
       61 gtgtattata aagagattta caatgttgac aggaaacgcc aaatgtattc caccatcaca
      121 ttttctgcgg atattattat gataggagac gcatatttaa gcaatcaatg gtaagaagaa
      181 acatgaaatt tagttgtttg gatattatcg tatcaagaaa tatcactaac tttgttcatt
      241 gtggatgtgg tgataatgga tttgcagcgt cttttactat ttcatattta atattcttat
      301 tgctacattt ctgtttccca atggagttaa aatagaatca tgttaataac aaaggtatga
      361 acactttaat tcttgatttt ttaaacagct atgctgacaa tcctaatcct cagtatgccg
      421 tgatgctgaa aggaaaatgg ggatgcggca aaacccatct tataaaacaa tggaagaaga
      481 ggtttgacga gaccgcagat accgacgagg aaattacgct aaagcccatc tatatttcga
      541 cttatggaat ggatagcgtg aatgacatca agacagctat agatagggaa ttaaatccct
      601 tcttctattc gaaaaccggg cgtttcataa agggtatttt gaaattagcc ggtaaggtag
      661 tcttcaagac gagtgtggat ttgaatgaca actctaaaga ggatggttca ttttccgcaa
      721 cactggattc attgtcgtta ctacaagtgg aagacgacag cataaaaggt gtaaagtttc
      781 tgatattcga tgacatcgaa aggtgcctga tagagatgaa ggaattgtta ggcttcatca
      841 actattttgt agagcactgt aattgtcatg ttgtcataat tggggatgaa aaccaccttg
      901 aaaaacttcc caaggctgtc ttgggtgagt ttaaggaaaa gaccataggc aaggaatttg
      961 aaatacaacc cgatatagaa gaagccatcg aatacttcct tgacgaagta ccggtatccg
     1021 attatttgaa agaaatgcgt gatttcatta ttgcctgttt tatgtgtaca aaatccgata
     1081 acttacgggt tttgagacaa tgcttgtatg attttaaaag ccacttaaac aaacttcctt
     1141 ccgaactgat tgaaaaggat aatatctttc ttaaaaatat tcttgggtca tttattgctg
     1201 tgtatgcaga gtataataat agtgagaaca aagggttaat ttgtaattgg agtagagatt
     1261 gtcagatttc actactccaa gatgataatg aggataagca aaggatacag catctaaggg
     1321 aaaaatatca atctttgaac aaggggttaa tttataatgt cttaaatccg gagtatgtta
     1381 cggctattat acaatatatt atcacaggtg ctccacttgt agaatttatt gttacggaaa
     1441 taaaggataa gcaagaagag ttgaagcctt gggaaatgct atccggcttt ttcgacatgg
     1501 aacagcaaaa acttgaaagt atttgccagg ccactataaa agccatattg gataaagaga
     1561 taaaagacgc ttatcaactt ggttatagta ttgcgtatct atcgtatttt gacgccattg
     1621 gcattttcta ttttatacag gcccatgcct ctttaataaa agtgagaata gcagaaatga
     1681 ttaatagtca aaccagttta gaggaacttt atcagctaag ggggcttttt attagtggat
     1741 gtaattatgt aaccacagat gtcaagactc caataacaga tgatattgtg ggctatttct
     1801 tgcagcagat gaaatcaaag ataaatgagt tgccggatca aatgcaaaaa gcactgcgta
     1861 atttgactga aggaacagta gaggaactta taattataga cagattgcct tatccagata
     1921 aaagttgtac atacgagctt cgtgctatat ttgcatctga agatgccaat gctctttttg
     1981 atgctatctg caaactaagc aataaaggca gaaatgcttt tacgcaattt cttgcttatc
     2041 attataattt tgactatgac ctacaagatg tgggagacag atataaggca gatattcctt
     2101 gtttactcaa actgaaagat ttggtcgata atgaaatcag tatatcaaaa ggagtggata
     2161 aacttgcctt cataaggtta aaagatgtct tgattgaagc tattaggagg tgtgaaggct
     2221 aaagtgatac attgatgcca atgtagaagc taaaaatggc gtatcgtaaa aaacggatgt
     2281 gcgatgaaag accattattc ctattgggct aaaatagagg atatgagggc tataaatgga
     2341 aacgggtggc ggcggggaat cgggaggcta taaagggagg aaggatgcca taaaagagta
     2401 gagccgtcgg cagaccggag cgcaaaaaat ccctctgccc ggtcatcacg accatgcaga
     2461 gggaacggtt gaaattatga ttatgtcaag cagcttcggc aatagcttcg tgtttggctg
     2521 cctgcggttg tccggtctct ttcaggcttt catcaatcct gtgttgaagt tccttacatt
     2581 cctgtttgag ccttgacagt tcatcggctt tactccactg gcgacaaatg atgtcctgca
     2641 atgtgggaat ttcgctttct atccgctcta ccgccttttg ttgcttctcg ataagagagg
     2701 gcaatttgct taatgctcca tgcggatatt gtgccgactc aacgaaacca agcggcagtg
     2761 caccactcag gccgcatcgg tatttcaatc cacttatacc ctctacaaag aatgtattgc
     2821 ggtcaaatgt accgtctata ctgtactcgc tacgcaccaa caagttcagc cctgcatacg
     2881 tgccaactgt gccatacgct tcgttgcggt aggtcttggc gatacggtgc aactcccggc
     2941 ctacttcctc ggtagtggct tgcggcaagc tcaaaagcag ggttgccttt gtcccattat
     3001 acgagctgat gtattccaaa tccctcatga gattggcctc tgtacgcttt gccttttcga
     3061 tttctccctg accggcagct attttacgct cggcacggat gcgttctttc ttgaaaatag
     3121 cctgttcctt ttcaagctgc ataatcttgt tgtcgagctt cgtcttgttc agcaagtcgt
     3181 tattgcctga cagaatagcc acgaactcgg caaagttcat accgctgtcc tcatccatgc
     3241 ctccctcgtc gatacggcgc acggcgattg taccgttgtt aatttggttg ataaacattt
     3301 gcttgttttt caacagatta aatttgtagg cgtcgagggt cttttccgta ccataaatta
     3361 cgacatctac cacattgcca ccccacagct ttacggtgtt gcctttgcgt attgccctgc
     3421 cgtttcgttg ctccatgtca gca
//
