LOCUS       NZ_OX461108             3223 bp    DNA     linear   CON 23-MAY-2024
DEFINITION  Serratia proteamaculans strain EBP3064 isolate EBP3064 plasmid
            EBP3064_p3.
ACCESSION   NZ_OX461108
VERSION     NZ_OX461108.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA112774569
            Sequence Read Archive: ERR11011242, ERR11011589
            Assembly: GCF_949794035.1
KEYWORDS    RefSeq.
SOURCE      Serratia proteamaculans
  ORGANISM  Serratia proteamaculans
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Delphine,Passerini., Alexandre,Cormier. and Thomas,Sauvage.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2023) Ifremer Centre Atlantique, Nantes, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_949794035.1-RS_2024_05_23
            Annotation Date                   :: 05/23/2024 08:49:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,165
            CDSs (total)                      :: 5,047
            Genes (coding)                    :: 4,998
            CDSs (with protein)               :: 4,998
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 20 of 49
            Pseudo Genes (incomplete)         :: 29 of 49
            Pseudo Genes (internal stop)      :: 7 of 49
            Pseudo Genes (multiple problems)  :: 6 of 49
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX461108.1.
            Genome assembly of Serratia proteamaculans from samples
            SAMEA112773091 and SAMEA112774569.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..3223
                     /organism="Serratia proteamaculans"
                     /mol_type="genomic DNA"
                     /strain="EBP3064"
                     /isolate="EBP3064"
                     /isolation_source="bacterial strain isolated from smoked
                     salmon"
                     /db_xref="taxon:28151"
                     /plasmid="EBP3064_p3"
                     /geo_loc_name="France"
                     /collection_date="2012-01-01"
     gene            complement(<1..291)
                     /locus_tag="QOT07_RS25815"
                     /db_xref="GeneID:83701975"
     CDS             complement(<1..291)
                     /locus_tag="QOT07_RS25815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000957083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_248966857.1"
                     /db_xref="GeneID:83701975"
                     /translation="MLTMWVTEDEHRRLLERCEGKQLAAWMRQTCLDEKPARAGKLPSI
                     SPALLRQLAGMGNNLNQIARQVNAGGGSGHDRVQIVAALMAIDAGLERLRHA"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            930..1100
                     /locus_tag="QOT07_RS25820"
                     /db_xref="GeneID:83701976"
     CDS             930..1100
                     /locus_tag="QOT07_RS25820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_004193911.1"
                     /db_xref="GeneID:83701976"
                     /translation="MHEPPVQSDYHARSGNYQLESNPERHDKSPVAVAIGNWVHGAEIV
                     ENAYRVLEVKA"
                     /name="hypothetical protein"
     gene            complement(1309..1641)
                     /locus_tag="QOT07_RS25825"
                     /db_xref="GeneID:83701977"
     CDS             complement(1309..1641)
                     /locus_tag="QOT07_RS25825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_008784643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EmrE family multidrug efflux SMR transporter"
                     /protein_id="WP_001099531.1"
                     /db_xref="GeneID:83701977"
                     /translation="MNTYIFLGGAIVAEVIGTTFMKYSEGFTRLWPSVGTAISYCAAFY
                     LLSQTLENIPTGIAYAIWSGAGIVLISLAGWLVSGQKLDWPAIAGMFLICVGVLVINIF
                     SKSSAH"
                     /name="EmrE family multidrug efflux SMR transporter"
     gene            complement(1809..2024)
                     /locus_tag="QOT07_RS25830"
                     /db_xref="GeneID:83701978"
     CDS             complement(1809..2024)
                     /locus_tag="QOT07_RS25830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_024195375.1"
                     /db_xref="GeneID:83701978"
                     /translation="MTELEKQLLSALEQLQQDYSKRLDEWENAFAEWRTMSGLIQRENA
                     ALNERVTVLSRQVQSLSEQLRRLSKG"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2028..2513)
                     /locus_tag="QOT07_RS25835"
                     /db_xref="GeneID:83701979"
     CDS             complement(2028..2513)
                     /locus_tag="QOT07_RS25835"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_025367738.1"
                     /db_xref="GeneID:83701979"
                     /translation="MNSLLTLAKDLEQKSKAQQQTTGEMLKAAFSEHEKSVRAELSESE
                     KRISAAILDHDRKLSSAMSQRTKGMLRMVSQTWLTIVLVSALLIASSAGILWWQGQQIL
                     ENYTTIREQKSTQAMLSERNSGVQLSTCGEQRRRCVRVNPEAGQFGEDSSWMILAGK"
                     /name="MbeB family mobilization protein"
     gene            complement(<2548..3204)
                     /locus_tag="QOT07_RS25840"
                     /pseudo=""
                     /db_xref="GeneID:83701980"
     CDS             complement(<2548..3204)
                     /locus_tag="QOT07_RS25840"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /db_xref="GeneID:83701980"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     ARG             complement(1310..1641)
                     /name="qacG"
                     /gene="qacG"
                     /gene_name="small multidrug resistance (SMR) antibiotic
                     efflux pump"
                     /tool="rgi"
                     /drug_class="disinfecting agents and antiseptics"
                     /identity="41.35"
                     /coverage="102.8"
     Typing          complement(388..579)
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="92.821"
                     /coverage="89.0"
                     /evalue="7.28e-73"
     Typing          559..1042
                     /name="ColRNAI_rep_cluster_1987"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="84.756"
                     /coverage="93.0"
                     /evalue="1.73e-132"
     Typing          complement(2..291)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="91.0"
                     /evalue="4.3100000000000003e-57"
     Typing          complement(1712..3201)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="91.784"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 ggcatgccgc aaccgctcga gtccggcatc gatggccatc agcgcggcga caatctgcac
       61 gcggtcgtgt ccgcttccac caccggcgtt aacctggcgg gcaatctggt taaggttgtt
      121 ccccatgccg gcaagctgac gaagcagcgc cggcgagatc gacggaagtt tgccggcgcg
      181 tgcgggcttc tcgtccaggc acgtctgccg catccaggcc gcgagttgct taccctcgca
      241 gcgctccagc agacgccggt gctcgtcctc agtcacccac atggtgagca ttttgctgcg
      301 tttgtctgcc aatccggcct cctgataacg ccgggacgga cgggaaatct tttcccggtc
      361 ggcacggtgt tggacaagcc gcagacgcgg cagtggtttt agcgggtttc ggggcgcagc
      421 cctgaaccag tcacgtagcg ctagcggagt gtatactggc taaacatgtt atgacggagt
      481 ggtaatttat gaaagtgctt catgtgacag gggaaaaatg cggctgccgg gcgtaagtgc
      541 aaaatgcagg tggtgatgaa atgacgcctc ctcgctcact cggtcgctac gctcctgccg
      601 tgagactgcg gcgggcgtta ccagctcaca gattacggga taagcaaatg ccgctcgaag
      661 caggaaaggc caagaaaagg atgcggagtt gccgtttttc cataggctcc gcccccctga
      721 cgagtatcac gaaaatgacg ctcaaatcag cggtggcgaa acccgatgcg gcttaaagat
      781 accaggcgtt tccccctggt ggctccctcg tgctcccccg cattcctgcc tttcggttta
      841 ccggtgtcat tccgctgtta tggccgcggt ttctcattcc acgcctgaaa ctcggttccg
      901 ggtaggcagt tcgctccagg atggactgta tgcacgaacc ccccgttcag tccgactacc
      961 acgcccgttc cggtaactat caacttgagt ccaacccgga aagacacgac aaatcgccag
     1021 tggcggtagc cattggtaac tgggttcacg gagcagagat tgtagagaat gcctacagag
     1081 ttcttgaagt gaaagcctga gtgcggctac actgaaagga cagtttaggt atctgcgctc
     1141 cgtgaaagcc agttaccatc ggaacaaaga gttggtagct ctgaattccg gcaaacgaac
     1201 caccgttggt agcggtggtt tttttgttta cagggaaaaa gattacgcgc agaaagaaag
     1261 gatctcaagg aaatcctttt gctttggcca atatgcttcg gtaaaaagtt aatgcgcaga
     1321 agattttgaa aaaatattaa taaccaaaac tccaacgcaa ataaggaaca ttcctgcaat
     1381 tgcgggccaa tcaagttttt gaccgctaac caaccaacca gctaggctta ttagtacaat
     1441 tcccgcacca gaccaaattg cgtaagcaat accggtaggt atattttcca atgtttggga
     1501 aagcagataa aaggcagcgc aataacttat tgcagttcct acagacggcc acaggcgtgt
     1561 aaatccttct gaatatttca taaaggtggt gcctatgact tcagccacaa tagcccctcc
     1621 caggaaaata tatgtattca taaaaatacc tcatgttgaa aaatttaaat atctttacat
     1681 aacaactaat taatagaacc cggcttatca tagcgaagga ccatgatgct gccactgcga
     1741 tcgttccagc tccagcgctt tctggtgctg caccgcccgc tcctgctgcc ggtgagtttc
     1801 tatcgcgttc agcctttcga caaccggcgc agctgctcgc tcaaactctg cacctgcctg
     1861 ctcaagaccg tgacgcgctc gttcagcgcc gcgttctccc gttgaataag accagacatc
     1921 gtccgccatt ccgcgaaggc gttctcccac tcgtccagcc ttttcgagta gtcctgctgt
     1981 agctgctcta atgcgctcag caactgtttt tccagctccg tcatgtgcta tttccccgcc
     2041 agtatcatcc agctcgagtc ctctccgaac tgtcccgctt ccgggttcac cctcacgcag
     2101 cggcgtctct gctcgccgca ggtcgagagc tgtacgccgc tgttcctctc tgacagcatg
     2161 gcctgcgtgc tcttctgctc ccggatggtc gtatagttct cgagtatctg ctgcccctgc
     2221 caccacagaa tgcccgcgct cgacgctatc agcagcgcgg agaccagaac gatggtcagc
     2281 cacgtctggc tgaccatgcg cagcatccct ttcgtgcgct ggctcatggc tgaggacagc
     2341 ttccggtcgt ggtcgaggat ggcggcgctg attctcttct cgctttcgct cagttccgct
     2401 ctgacagact tctcgtgctc gctgaatgcg gctttcagca tctcgccggt agtctgctgc
     2461 tgcgctttcg atttctgctc taagtccttc gccagcgtta aaagactgtt catagatggc
     2521 tcccttcagt cggatgtttc gccccccgtc cgggtcggca atgctgatgc tgctttttgt
     2581 ggtgcgcacc acctcaaaac ctgcgctttc cagcgcctca gtgacgtcct gacgcgtttt
     2641 cagctccccg gatgaggcaa gggcaagcag gccgctcgta atcgcctggg cggcttcctg
     2701 cttcgcttcc ggcagcgcgg aaggcgagac cagcacccgc cggttctccg gcgcgttcgg
     2761 gtcatgcagc cccagcctgc cgttcactat ggtctgccag gcatcgatgc gcggacggtc
     2821 ggcgcggtcg taatacggct gtagccgctt gccggtcaga agctccgtgt tcgggatcag
     2881 gaagttcagc tccagccgcc ccttgtcccg gtgctcaacc cacagcacgc tgtactggtc
     2941 tttatcgagt ccgggcatca gaacccgctc gaaactcgcc atcagctttt cgcgctggcc
     3001 gggcggtaaa tcctgttcgg caaaagacag aacgccggaa gtgtactttt tggcgtaggg
     3061 cgaggcgtcg ataagctccc ggacttcatc cggcttcccc tgcagaacgc tggcgccgtc
     3121 gcgctggcga tctttaccca gcagataatc gaccggcccg ccgccgccgc cgcgcccccg
     3181 aggatgaaac ttaacgatca tcatcagcac ccttttccag tac
//
