LOCUS       NZ_OX461107             5746 bp    DNA     linear   CON 23-MAY-2024
DEFINITION  Serratia proteamaculans strain EBP3064 isolate EBP3064 plasmid
            EBP3064_p2.
ACCESSION   NZ_OX461107
VERSION     NZ_OX461107.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA112774569
            Sequence Read Archive: ERR11011242, ERR11011589
            Assembly: GCF_949794035.1
KEYWORDS    RefSeq.
SOURCE      Serratia proteamaculans
  ORGANISM  Serratia proteamaculans
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Yersiniaceae; Serratia.
REFERENCE   1
  AUTHORS   Delphine,Passerini., Alexandre,Cormier. and Thomas,Sauvage.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-APR-2023) Ifremer Centre Atlantique, Nantes, France
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Name                   :: GCF_949794035.1-RS_2024_05_23
            Annotation Date                   :: 05/23/2024 08:49:18
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.7
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,165
            CDSs (total)                      :: 5,047
            Genes (coding)                    :: 4,998
            CDSs (with protein)               :: 4,998
            Genes (RNA)                       :: 118
            rRNAs                             :: 8, 7, 7 (5S, 16S, 23S)
            complete rRNAs                    :: 8, 7, 7 (5S, 16S, 23S)
            tRNAs                             :: 84
            ncRNAs                            :: 12
            Pseudo Genes (total)              :: 49
            CDSs (without protein)            :: 49
            Pseudo Genes (ambiguous residues) :: 0 of 49
            Pseudo Genes (frameshifted)       :: 20 of 49
            Pseudo Genes (incomplete)         :: 29 of 49
            Pseudo Genes (internal stop)      :: 7 of 49
            Pseudo Genes (multiple problems)  :: 6 of 49
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX461107.1.
            Genome assembly of Serratia proteamaculans from samples
            SAMEA112773091 and SAMEA112774569.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
FEATURES             Location/Qualifiers
     source          1..5746
                     /organism="Serratia proteamaculans"
                     /mol_type="genomic DNA"
                     /strain="EBP3064"
                     /isolate="EBP3064"
                     /isolation_source="bacterial strain isolated from smoked
                     salmon"
                     /db_xref="taxon:28151"
                     /plasmid="EBP3064_p2"
                     /geo_loc_name="France"
                     /collection_date="2012-01-01"
     gene            237..>659
                     /locus_tag="QOT07_RS25770"
                     /pseudo=""
                     /db_xref="GeneID:83701966"
     CDS             237..>659
                     /locus_tag="QOT07_RS25770"
                     /inference="COORDINATES: protein motif:HMM:NF015397.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /db_xref="GeneID:83701966"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            706..1191
                     /locus_tag="QOT07_RS25775"
                     /db_xref="GeneID:83701967"
     CDS             706..1191
                     /locus_tag="QOT07_RS25775"
                     /inference="COORDINATES: protein motif:HMM:NF016710.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_283604546.1"
                     /db_xref="GeneID:83701967"
                     /translation="MSEILNLAKGFEEKSKQQAQDTEQSVKREFVRLETSISAELQSSS
                     QSISNAIREQNGRLTGMIRATATTALIWIVVCAALLIGILSGIIWFQGQIISSRLSDID
                     GYSQLLASLKAKSGAGVTIYSDDSQKNGYLVVLPVKAHGVETYTSTAGNTVVKYTAK"
                     /name="MbeB family mobilization protein"
     gene            1261..1488
                     /locus_tag="QOT07_RS25780"
                     /db_xref="GeneID:83701968"
     CDS             1261..1488
                     /locus_tag="QOT07_RS25780"
                     /inference="COORDINATES: protein motif:HMM:NF016769.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_241229579.1"
                     /db_xref="GeneID:83701968"
                     /translation="MEKQLLSALESLQASYEQQHQAWQESYSSLQHMFETTSQALNRSD
                     RVCQHLSNQVNSLRGQVESLSDNLSRLMRS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            1956..2288
                     /locus_tag="QOT07_RS25785"
                     /db_xref="GeneID:83701969"
     CDS             1956..2288
                     /locus_tag="QOT07_RS25785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015873600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="WP_283603850.1"
                     /db_xref="GeneID:83701969"
                     /translation="MSHAIEFIETPMFTRQIKQIATDDELKDLQKVLIESPDKGDLIRQ
                     TGGLRKIRMATGVQGKSGSARVIYFLATDEIIYLVMAYPKSTKDSLTDAEKSDLKKLTK
                     LLKDEV"
                     /name="type II toxin-antitoxin system RelE/ParE family
                     toxin"
     gene            2290..2574
                     /gene="nadS"
                     /locus_tag="QOT07_RS25790"
                     /db_xref="GeneID:83701970"
     CDS             2290..2574
                     /gene="nadS"
                     /locus_tag="QOT07_RS25790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000007431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NadS family protein"
                     /protein_id="WP_012442910.1"
                     /db_xref="GeneID:83701970"
                     /translation="MSFFDELKASLEEAVEIKKGVKAPARVTRYELADVKALRAQLNVT
                     QDEMAKVLGTSLDTIKSWETGRRNPTGLAAKVLATIQANPKFFQELASH"
                     /name="nadS"
     gene            2766..3686
                     /locus_tag="QOT07_RS25795"
                     /db_xref="GeneID:83701971"
     CDS             2766..3686
                     /locus_tag="QOT07_RS25795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004088970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_283604547.1"
                     /db_xref="GeneID:83701971"
                     /translation="MTNSALDLFNDRLPNKPYFSDDLHFGVRIAGKERAILAKYIQFNQ
                     PHAMFWLGFDVDRIGAAIDWSDRNAPAPTMTITNPENGHAHLLYALETSIRTAPDGKMK
                     PLKYAAAVENALRKKLDADVGYSGLICKNPNHGYWKIAVWQPELYTLDWLADSLDLNAA
                     NDKEIVADYGLGRNCTLFDKTRKWAYRAIRQGWPEYEQWLQACYERGRAYNLQFPTPLD
                     DGEVMGIAKSIAKWTVHHFSKESFDDYVKRTHSSEIQSVRGRVGGKISSGGGRKKSLSS
                     QESESPWVNLGISRRAFFYQKKKAN"
                     /name="replication initiation protein"
     gene            complement(3690..4226)
                     /locus_tag="QOT07_RS25800"
                     /db_xref="GeneID:83701972"
     CDS             complement(3690..4226)
                     /locus_tag="QOT07_RS25800"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_283604549.1"
                     /db_xref="GeneID:83701972"
                     /translation="MNKINIYWLIANHISSLKGDDSNPLPKADLWLHFISPLIISALIC
                     YFFKVMPSSVVGIMVNFGSITTALLMSAVVMVYDQKSKIIEKEEKETVADKKTTYKKNI
                     ALYKELCQNICFAILTSIIIVILSAVLSFYDIKITSGISYYVFLVASFFCYALFISTMI
                     TFLMILKRFSIILDN"
                     /name="hypothetical protein"
     gene            complement(4223..5143)
                     /locus_tag="QOT07_RS25805"
                     /db_xref="GeneID:83701973"
     CDS             complement(4223..5143)
                     /locus_tag="QOT07_RS25805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000556384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_283604551.1"
                     /db_xref="GeneID:83701973"
                     /translation="MSSFRVLLKARSRKSFKLGELNNDQNIKAYEIVKGIINRNTNIPL
                     EDTDTKLIVSIIPGSLTFDDNKRIIYGYVNAGRYGENYTVRQKQLSSTNHKKVNHDEVT
                     EKRRYIFMYFPDSLDTGIIAFHDTSRLNARTPIKRIIENGFMANTPPLEARVRSLLHEQ
                     IPQAVKDSPVTEIKAVGYKVSKDTADAMRLIGNRTTAEFVVKNKGYSMGLVSDYLDKSK
                     SQNKLIELLEPNSDKLKITVQVNGKDKIYELRNIIAKGVSITLDDASLNIDPLTNEPNE
                     QDLHNAVKEEINDFLSDIYGQGYAI"
                     /name="hypothetical protein"
     gene            5448..>5746
                     /gene="mobC"
                     /locus_tag="QOT07_RS25810"
                     /db_xref="GeneID:83701974"
     CDS             5448..>5746
                     /gene="mobC"
                     /locus_tag="QOT07_RS25810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006674374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="WP_283604553.1"
                     /db_xref="GeneID:83701974"
                     /translation="MEKRTREIKIRLTDSEHQRLIDRCDRTHLAEWLRQLGLGEHTARK
                     RRLPDVAPELLRQVSGIGNNLNQIARRLNQLDGLNPTERVSLLAVLNSLDRNLG"
                     /name="mobC"
     Typing          complement(5582..5746)
                     /name="Col(Ye4449)"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="93.976"
                     /coverage="86.0"
                     /evalue="1.3800000000000002e-64"
     Typing          19..1547
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="96.078"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 actgctggag caacaccgtg atcgttaaaa ttcattcacg gggtgccggt tctggcagcg
       61 gtcccgttga ttatctgctg ggcaaagatc gccagcgtag tgacgcccgc gtgctgcggg
      121 gagatgccga acgcacccgc gaactgattg acggctgtga ctttgcccgc gcctacacct
      181 ccggcgtgct ttcctttcag gaggctgaca ttgccgagtc tgaaaaggcg cgtctgatgg
      241 acgaatggga acagacactg atgaccggtc tcgacaaaga ccagtacgcc tgtctgtggg
      301 ttgagcatca ggacaaaggc cgcctcgagc tgaacttcgt gatcccgaac atcgaattgc
      361 agagcgggaa acggctgcaa ccctactttg accgcgcaga ccgtccgagg gtaaacgcct
      421 ggcagacgct gaccaacgac cggctcggac tgcgcgaccc gaatgacccc gcctatcgcc
      481 gcccgctgac gcaggccagc gatctgccgc gagacaaaca gcaggcagcg gaaaagctga
      541 ccgcaggtct gatgaacctg atggcacagg gcgctatacg cagccggcag gacgtggtga
      601 atcagctcga aagcattggg ctcaccgtgg cgcgtgaaac cagaagcagc atcagtattg
      661 ccgacccgtc cggcggcaga aacatccggc tgaaaggaat gatttatgag cgagatttta
      721 aatttggcga agggcttcga ggagaaatcg aagcagcaag cgcaggatac cgagcagagc
      781 gtgaagcgcg agttcgtgag gctggaaacg tctatcagcg cggaactgca atcaagctcg
      841 cagagcatca gcaacgctat ccgcgagcag aacggcaggc tgacgggtat gatcagagcc
      901 accgcgacca ccgcgctgat ctggatagtg gtctgcgccg cgctcctgat tggcatcctg
      961 agcgggataa tctggtttca ggggcagatc atcagctcac gtctgagcga catcgacggc
     1021 tacagccagc tgctggcgag cctgaaagcg aaaagcggcg cgggggtgac gatctacagc
     1081 gacgacagcc agaagaacgg ttatctggtg gtgctgccgg tgaaagcaca cggcgtggaa
     1141 acctacactt cgacggcggg caacacggtg gtgaagtaca ccgcgaaata accccgccag
     1201 aacgcacaga aacgcccatg aacgattttg acccacagga cacagaaaac catgaccgaa
     1261 atggaaaaac agcttctgag cgccttagag agcttacagg ccagctacga acaacagcat
     1321 caggcgtggc aggaaagcta cagcagtttg cagcacatgt tcgagactac ctcacaggca
     1381 ctgaaccgca gcgacagggt gtgtcagcac ttgagcaatc aggtgaacag cttgcgcggt
     1441 caggtcgaga gcttgagcga caatctcagc cggttaatgc gctcgtaaaa cagcacgaac
     1501 accagctgaa attggaaaag cagcagaccc gctatcatgg tctgacgcgt taatttgagc
     1561 gaaaatgcca ccaaatcagg aggggttatc gacacttctt gcactgactc tgattagtaa
     1621 ctccattatc ctttaatcta tatccaaaga tttccttcaa ctcagcttca gtatccgcct
     1681 ttgcggtttt gcacttagga catgtgtgcg gcaacttaat ttttccagcc ataaaacacc
     1741 tcaaaatgaa cgaagagaac cataatcctt tcccacacag aaaacagagt caacaccgaa
     1801 acccgtttat caggtgaatg gtctcacttc gtgaaaccaa gtgctcgaat ttagcagcaa
     1861 tctgatagat atcggtggtc atgcaggatt tcacacatag acacgatacc atcatagtgt
     1921 acaatgtact ctggtatttc aaaggaaatg acacagtgag ccatgcgata gagtttatcg
     1981 aaacgccgat gtttacccgt cagataaagc aaatcgccac ggatgacgag ctcaaagatc
     2041 tccagaaagt gctgattgaa tcaccggaca aaggcgatct catcaggcaa accggcgggc
     2101 tgcgaaaaat cagaatggcg accggcgtac aggggaaaag cggcagtgcg cgggtgattt
     2161 actttctggc caccgacgag attatctatc tggtgatggc ctacccgaaa agcaccaaag
     2221 acagcctaac ggacgccgaa aaatccgacc tgaaaaagct gacgaaatta ctgaaagatg
     2281 aggtgtagca tgagtttttt tgacgaactg aaagcgtcac tcgaagaagc cgtcgagatc
     2341 aaaaaaggcg ttaaagcgcc tgcccgtgtg acacgctacg aactggctga cgtgaaggca
     2401 ctccgcgccc agctgaacgt gacgcaggat gaaatggcta aggtgcttgg caccagcctc
     2461 gatactatca aaagctggga aaccggcaga cgtaatccga caggattggc ggcgaaggtg
     2521 ctggcgacca tacaggccaa ccctaaattc tttcaggaac ttgcctcaca ttaaggcttt
     2581 atgacggaag gattcgacag gagccgccgt tcgcgtgtaa ctttaacggc agaaaaaaca
     2641 aagccccgaa ttcatatctc aacttggcgg aagggaatat gaagtcaggg ctaggcataa
     2701 aacctaagaa ggatattagc acatgcacag tgcaagacaa cagcccgcca taagctcagg
     2761 cgtgagtgac taactcggct ctcgacctgt tcaacgaccg cttacctaac aaaccgtatt
     2821 tttcggacga tctgcatttt ggtgtacgca tcgcgggaaa agagcgcgca atcttggcga
     2881 aatacattca gttcaaccag cctcacgcca tgttctggct aggttttgac gttgaccgta
     2941 tcggtgcagc catcgactgg agcgatcgca atgcgcccgc gcctacgatg accatcacca
     3001 accccgaaaa tggtcatgct cacctgcttt atgcgctgga aacctcgatt cgcaccgcac
     3061 ccgacggaaa aatgaagccg ctgaagtacg ccgctgccgt agagaatgcg ctacgtaaaa
     3121 aactggacgc tgacgtgggt tattcggggt taatttgcaa gaatccgaac cacgggtact
     3181 ggaaaattgc tgtctggcag ccagaactct acacgttgga ttggctggcc gactcgctcg
     3241 atctaaacgc cgcgaacgac aaagaaatcg tagccgacta tggcttaggc cgtaactgca
     3301 ccctgttcga taaaacccgc aagtgggctt accgcgcgat acgtcagggc tggccggagt
     3361 atgaacagtg gctacaagcc tgctacgagc gtggcagagc ttacaatttg caatttccaa
     3421 ctcctcttga cgatggtgaa gtgatgggaa tagctaaaag catcgctaaa tggactgtgc
     3481 accatttctc caaagaaagc tttgatgatt atgtaaaacg aactcatagc tctgaaattc
     3541 agtctgttag aggtagggtc ggaggaaaga taagttcagg tggaggaagg aaaaaaagcc
     3601 tgtcttcgca agagagtgaa agtccatggg taaaccttgg tatcagtagg agagctttct
     3661 tttatcaaaa aaagaaagcc aactaaaatt tagttatcca gtattatgct gaatctcttt
     3721 aagatcatta ggaatgttat cattgttgat ataaataagg catagcaaaa gaaagaggcg
     3781 acaagaaaaa catagtaaga aattcctgat gttattttaa tgtcgtaaaa tgaaagaaca
     3841 gcagaaagta taacaatgat tattgatgta agtattgcga agcaaatgtt ttggcatagc
     3901 tctttgtaga gagctatatt tttcttatag gttgtttttt tatcggctac agtttctttt
     3961 tcttcctttt cgataatttt gcttttctgg tcataaacca ttacaacagc actcattaat
     4021 aatgcggttg taattgagcc aaagttaacc ataataccaa ctaccgaaga tggcatgact
     4081 ttaaaaaaat aacagattaa agctgatatt atcaaaggtg atataaaatg aagccataaa
     4141 tctgccttgg gcaatggatt agaatcatca ccctttaaac tagatatgtg gtttgcaatc
     4201 aaccagtaaa tgtttatttt attcatattg cgtacccttg cccgtaaatg tctgaaagga
     4261 agtcatttat ttcttctttt acagcattat gcaagtcttg ctcgttaggt tcgttcgtta
     4321 gagggtctat gttaagactt gcatcatcta aagtgataga cacgcccttt gctattatgt
     4381 tcctaagttc ataaatcttg tcttttccat ttacttggac tgttattttc aacttgtcac
     4441 tgtttggttc taacagttct atcagtttat tttgtgattt acttttatct aggtagtctg
     4501 atacaagacc cattgagtag cctttattct ttacaacaaa ctcggctgtt gtcctattcc
     4561 ctattaagcg catggcgtcg gcagtgtctt tacttacttt atatccaaca gctttaattt
     4621 ctgttacagg tgagtctttt actgcctgag ggatttgctc atgtaataat gatcgaacac
     4681 gcgcctctaa tggaggagtg tttgccatga atccattttc aattatcctt tttataggag
     4741 tccttgcgtt taatctagat gtatcatgga atgcgattat cccagtatct aaactatctg
     4801 ggaaatacat aaatatatat cttcttttct cagtaacttc atcatgattt acttttttat
     4861 gatttgtaga agatagttgc ttttgtctta cggtgtagtt ctcaccataa cgaccggcat
     4921 taacataccc gtatataatt ctcttgttat cgtcaaaagt aaggcttcca ggaattatgg
     4981 aaactattag tttagtatcg gtatcttcaa gagggatgtt tgtgttgcga ttaataatac
     5041 cttttactat ttcataggcc tttatatttt ggtcgttgtt caactcacca agcttaaagg
     5101 actttcgaga ccttgctttt agcaacactc tgaaagaaga catatgaact gcgtgcatag
     5161 atacctgcca tggctaattg ttttattttt accgaataat agctgaaaaa tgtttgcact
     5221 gaaacaagcc tatatcagat aacagccctt tgctgggagg gtggtttgct ttggcagcaa
     5281 ccacagaatc tgacatactc taccgcactt taagccagta cacacagcgt cccctctacg
     5341 aggtgccgtc tgtgactggt tcagggggct cgccgccccc cgaaaccccg ggcatccact
     5401 gcgaaacttt cgcactttgg gtgcgaatat ttctcagcgg agtgagaatg gaaaagcgca
     5461 cgagagagat caaaatccgc ctgaccgact cagagcatca gcgtctgata gaccggtgtg
     5521 accgtaccca tcttgccgaa tggctgcgcc agctcggtct gggagaacac accgccagaa
     5581 agcgccgtct gcctgacgtg gcgcccgaac tgctgcgaca ggtcagcggg ataggcaaca
     5641 acctcaatca gattgcccgc cgccttaacc agctcgacgg actgaacccc actgagcgcg
     5701 tttccctgct tgcggtgtta aacagccttg accgcaatct cggtga
//
