LOCUS       NZ_OX359186             3751 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Klebsiella pneumoniae strain KP34 isolate 2018-347802-001-01 plasmid
            p04, complete sequence.
ACCESSION   NZ_OX359186
VERSION     NZ_OX359186.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111391102
            Assembly: GCF_947164515.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Pongolini,S., Scaltriti,E. and Menozzi,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) IZSLER, Risk Analysis and Genomic
            Epidemiology Unit, IZSLER, Risk Analysis and Genomic Epidemiology
            Unit, Strada Mercati 13/A, 43126, Parma, Italy, Italy
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 02:36:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,459
            CDSs (total)                      :: 5,338
            Genes (coding)                    :: 5,208
            CDSs (with protein)               :: 5,208
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 60 of 130
            Pseudo Genes (incomplete)         :: 79 of 130
            Pseudo Genes (internal stop)      :: 22 of 130
            Pseudo Genes (multiple problems)  :: 28 of 130
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX359186.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3751
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP34"
                     /isolate="2018-347802-001-01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p04"
                     /geo_loc_name="Italy"
                     /collection_date="2018-11"
                     /collected_by="Baggiovara Hospital in Modena"
     gene            join(3389..3751,1..36)
                     /locus_tag="OM989_RS27230"
     CDS             join(3389..3751,1..36)
                     /locus_tag="OM989_RS27230"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222916.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKEIKYDLETSPNPDA"
                     /name="hypothetical protein"
     gene            complement(297..1316)
                     /locus_tag="OM989_RS27235"
                     /old_locus_tag="KPNEU34_KP34_05269"
     CDS             complement(297..1316)
                     /locus_tag="OM989_RS27235"
                     /old_locus_tag="KPNEU34_KP34_05269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001271364.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     gene            complement(1750..2283)
                     /locus_tag="OM989_RS27240"
                     /old_locus_tag="KPNEU34_KP34_05270"
     CDS             complement(1750..2283)
                     /locus_tag="OM989_RS27240"
                     /old_locus_tag="KPNEU34_KP34_05270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000168772.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPVTGKSRKN"
                     /name="hypothetical protein"
     gene            complement(2286..3212)
                     /locus_tag="OM989_RS27245"
                     /old_locus_tag="KPNEU34_KP34_05271"
     CDS             complement(2286..3212)
                     /locus_tag="OM989_RS27245"
                     /old_locus_tag="KPNEU34_KP34_05271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_014342223.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGYDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     Typing          complement(542..1316)
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          complement(2290..3212)
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.727"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tacgatctgg agacatcccc aaacccagac gcgtaagtgc ctccatccgt gttccggttc
       61 cctggtgctt cctcgctcat tcgctcgcta cgctcggtca tgagactgcg gcgagcacga
      121 ccacctcaat catgcggtaa gccgcaccat tgctgggctg agaggagaaa accgccggaa
      181 agcccgctgc tcaaaaagac gccgaaaggc gctgttatct gatataggct tgttcatgtc
      241 cgcgaattta accccccatt aacaaaaaac ggggggtagt gttacttctt tgttaactaa
      301 catttaatta tttgtttctt ggttagccat tctccagaat tatccatcca gcgtcgaata
      361 gtccggctgc taacaccaac cgccactgca atatcttccg ttgacgctcc caagatatac
      421 atatcaagcg ccctacgacg tttgtcgtcg ttagcagtcc accgaacagc ggcgcttttt
      481 ttccctttgt ccgactgatt ttctgacgaa ttggccttcc cgcccttgcg accgcgtgct
      541 gcctgaattt ctggcgtgtg cgtatcagcc acatactgtg cgaaagtttc cggcgtgaag
      601 ttcctgtgcg tgtatttcgc aatgctcttg ccaatagccc gacattcagc cagtgaaagc
      661 ggaacgggaa gcgatgcatt gtacatttcg acacgctgga tcaccgcttc aagccactgt
      721 gagaacgctg gccagccctg acgaatcgcc ctgtaagccc atttgcgcgt catttcgaac
      781 aggtggcagt ttcgccccat cccgtaatgt ttatcgatgc tacgacgctc tgaggcgctc
      841 aaatcgagat aatctgccag ttcatcgagg gtataggcgt cctcgcgcca ctccatcacc
      901 tgccattcca ggtggaacgg atttttgcaa atcaggccgc tgtagttcac atcagcacaa
      961 agtttctcac acagcgaacg ttcaaccgct gcggcatatt tcagcgcctt aaccgaggca
     1021 tcaggcgcgg ttctcacggc gatgttgagt gcgtagagca ggtgagcgtg tccgttcaca
     1081 ggatttttaa cggtgatgtt cggcgcgggg gcgttccggt cgctccagtc aatcgcagcc
     1141 ccctcgcggt caacgtcaaa aaccagccag aactgcgcat gaggctggtt ctgctggatg
     1201 taccgcgcaa gaagcgcacg ccctttgccg gagatgcgaa ggccgaaagc gagatcatcc
     1261 gtgtgatagg ggcggtgggg taaattttct tcgaagtatt gaagcgcggc gctcatgtgt
     1321 tacgattcct tccaggttat cgaccgacct cgcccctgta ttctcgtgac aatcttggcg
     1381 gagagacacg aatttcaggg gcgtttgttt ttcagtcgct tacactaccc ccaacaacaa
     1441 aacctgtcga gccttcccgc aaaaccgatc catttaccat aactcccgtt gtacgccccc
     1501 cttaaaacgc cctcagtcgc tctctggcgc aaaaaacgca aaaagacaag gaaacaccag
     1561 gctaaaccag aaaaatgcgt cagaatcgtt tttagcgcgt tgcataacta tgcacgaaag
     1621 cgatgcgcga tctgtttcga gcgttcagaa gggcgaacgg gtcaaaacag caaactttct
     1681 catcagaaaa cggtgaacgg gacgcggaat tttttcgcgg gtcgtgaggc gttggacaag
     1741 cgaagcgcgt cagtttttcc ggctcttgcc cgtgacaggt ttctccgcca gtttatcttc
     1801 cagtgtcaca actttctgat acaccgccgc tgtggcgttg tagttcctgt cgagcattgt
     1861 tttcattccc catccaagca cacagaacat aaccagaaaa gccactgaca ccccacccag
     1921 ccatttccag ctataccctt taagggtgtt gtattcctgc acgatattgc tgtgaattgt
     1981 cgcaatatcc ctgttcaggg catccgcgtt tgccttcatg tttgcgactg actcttccag
     2041 ccgctgaaaa tcctggctga tgcgctcacc tatcagccct gcaacatcca gcttctgcac
     2101 ctcgtttctg acttcatccc tgacctgttt tgccacaccg tcagaaatat cccgatatcc
     2161 gcgaagtgtt tcccttgcca cagccagaga atcagcaaca gctttctgtt gctccattgc
     2221 ggtatgttgc agatgctcca ccgataacag gagcgtgagt aatttttctt ctgtgctggc
     2281 catgttcaga atcccataga aaatccacgt gacggtgatt taacccgttc aggttcagtt
     2341 cggttctgtc tgctcactct gtctctcatg tcaaagccat gctcccgcgc aacatcatgt
     2401 tgcagccttc tgaccagttc atgttgctta accggagtgt ccagccattc cctgatgtca
     2461 tacccgaccg ttcgcgcctg ttcaagatgg cgggaatagt ccggttcaga ccgtttttgc
     2521 atgatgtcat gacgctgggc atcatcaagc cgtccggcag cttcaaaacc cagatgcact
     2581 tcgggacgtc gttcaatgcc ctgttctttc agcgtccggc agtcaatgaa gcccctttca
     2641 aagccatgct ttctcatatg ttcgttgtgc ttcacctccc agcgttttcg caattcccgc
     2701 aactgctctt tttgctgagt gagagtcagg cttccggaat cctttttcgc acctccccgc
     2761 tcgggatacc tggcgttata gcgccggaaa tactgctccg gtgtacgttc aatgccatca
     2821 ttcacacgct ggctcatcat gatatgcgca tgaggctgtt cgccgccgtc aatgctcgct
     2881 ttcggattgt gaatggcaaa actccaggcg tgccgttcgc cagcttcctg acgtacaaaa
     2941 tcctgcacca gttcaaggcg ctgttccgct gtcagttcac ggggtaatgc aatttcaagt
     3001 tcccgatagg tcgaaccgtt cgcacgttca aactggtcag cagcctgcca gaaatgtgag
     3061 ggattatctc gcgcccattc cggcatgttt ccgtgtgcgg aatattccaa atcctgacgg
     3121 tcgcggtatt tctctttgcg ctcgatgtaa tcggcgtggt ttgcagcctg ccccttgcca
     3181 ccaaatttaa cgctgaggtg ataggttgcc acggtttcag ccctccgcag gagcgcactg
     3241 tttctcgacg aaggagagaa acatataagt gcgcttcctt ctaattttac gaattagcac
     3301 ggaagatacc ccctgcaccc gccgaccgca agcgatatac tgcacgacca caacacaccg
     3361 caaaaaaaca ccagggagca ccacgaacat gcgcatcagc aacatcgaat ggctgaagaa
     3421 acggatcgga ttcatcagga agctcggaga acagaccgca cgacagagac agattattga
     3481 cctgctcgac aacgaagcag gactcacaga acaggaacgc aaactcctcc acgtactggc
     3541 aacagcggaa aaaaacgact tacaggcaca ggagagcgaa cgaaaacagg cggtccaaaa
     3601 acgaatcgag ggaaaaaaac aacgacgaga acgcaatcac cgactctttc tcgcggctgg
     3661 gctactgatc gaagcaggac tggtagacac aaaaacaggc gagctatgct ataaaaaaga
     3721 caggatatta caggcactta aggaaattaa g
//
