LOCUS       NZ_OX359185             4715 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Klebsiella pneumoniae strain KP34 isolate 2018-347802-001-01 plasmid
            p03, complete sequence.
ACCESSION   NZ_OX359185
VERSION     NZ_OX359185.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111391102
            Assembly: GCF_947164515.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Pongolini,S., Scaltriti,E. and Menozzi,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) IZSLER, Risk Analysis and Genomic
            Epidemiology Unit, IZSLER, Risk Analysis and Genomic Epidemiology
            Unit, Strada Mercati 13/A, 43126, Parma, Italy, Italy
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 02:36:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,459
            CDSs (total)                      :: 5,338
            Genes (coding)                    :: 5,208
            CDSs (with protein)               :: 5,208
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 60 of 130
            Pseudo Genes (incomplete)         :: 79 of 130
            Pseudo Genes (internal stop)      :: 22 of 130
            Pseudo Genes (multiple problems)  :: 28 of 130
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX359185.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..4715
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP34"
                     /isolate="2018-347802-001-01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p03"
                     /geo_loc_name="Italy"
                     /collection_date="2018-11"
                     /collected_by="Baggiovara Hospital in Modena"
     gene            20..583
                     /locus_tag="OM989_RS27210"
                     /old_locus_tag="KPNEU34_KP34_05265"
     CDS             20..583
                     /locus_tag="OM989_RS27210"
                     /old_locus_tag="KPNEU34_KP34_05265"
                     /EC_number="3.1.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016249761.1"
                     /GO_function="GO:0004722 - protein serine/threonine
                     phosphatase activity [Evidence IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family serine/threonine-protein phosphatase"
                     /protein_id="WP_225367982.1"
                     /translation="MVIMDGYSCSEWNMKILSGRLDKCVFSGDLNKDIIEPCKSVPVKA
                     AVCFLFKNNTHLHIYNAGDCRVYNKSGVLLTEDNSVAWKRLKENGIDNKKIPHLVCYCP
                     DRNYLTSFVDFCSDEIIFNHSVFDLNDENKEVILCTDGFWEHFNDGTVIDLMKDNPESN
                     LAKFTKNIPGNAENHTVCYVRFPS"
                     /name="PP2C family serine/threonine-protein phosphatase"
     gene            complement(805..918)
                     /locus_tag="OM989_RS27320"
     CDS             complement(805..918)
                     /locus_tag="OM989_RS27320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005761324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001427893.1"
                     /translation="MHEPPVQPDCCALSGNYRLESNPVRHALTPLAAATGN"
                     /name="hypothetical protein"
     gene            complement(1572..1766)
                     /locus_tag="OM989_RS27215"
                     /old_locus_tag="KPNEU34_KP34_05266"
     CDS             complement(1572..1766)
                     /locus_tag="OM989_RS27215"
                     /old_locus_tag="KPNEU34_KP34_05266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001041627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_001041633.1"
                     /translation="MNKQQQTALNMARFIKSQSLTLLEKLDALDADEQAAMCERLHELA
                     EELQNSIQVRFETESETGT"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            2842..3798
                     /locus_tag="OM989_RS27220"
                     /old_locus_tag="KPNEU34_KP34_05267"
     CDS             2842..3798
                     /locus_tag="OM989_RS27220"
                     /old_locus_tag="KPNEU34_KP34_05267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000280763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000280763.1"
                     /translation="MYLIEEALTSWLLNEYKKPVITKEEISLQIYLFYLKKEYNGERIY
                     QIRKNKAGPNEFEKNILKLLKSGVLSRVESNDKHHAYPHLIGGFYEVFFVKGNDGSPEN
                     DIVCSTYPYGYLSYLSAMDWHNITDKIPKIIHFTTCRSEQWKNKFYHDFQKDNPDIDEA
                     KQFMPRFPRNSEVNGIKIIVTQETNYVEPMKARNSPVRVSSIGKTFMDMTRRPDYCGGE
                     EHVLESFIEHGKKYAPLIIKEVDKLGRHIDKVRVGFILDRIIGVNNKKISEWKQEAGKY
                     RGSSKVLSPKSPFSPYFDEEWFISINVDMVKSYGKRN"
                     /name="hypothetical protein"
     gene            3782..4648
                     /locus_tag="OM989_RS27225"
                     /old_locus_tag="KPNEU34_KP34_05268"
     CDS             3782..4648
                     /locus_tag="OM989_RS27225"
                     /old_locus_tag="KPNEU34_KP34_05268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000409995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyl transferase AbiEii/AbiGii toxin
                     family protein"
                     /protein_id="WP_000409995.1"
                     /translation="MEKEINNWIEESGGKYRLMRQAVHIILKSISIEESLNEMMVMKGG
                     TLLGVKHGSDRYTKDIDFSTEKKLSEIDLGDFFNRFNDSMDVAEAELGYGIKCKVQSHK
                     IQPNAQGTFPTVQINIAFCDRSNASAMKRLESNQSPSVINIDFSFNEKTYDFDFLSLDG
                     DDDNDSVKTYSLTDLMAEKYRSVLQQKVRERNREQDIYDINYLLGKYEFSRQDKYKILE
                     SLLKKSEGKQLDNLLNVKGIRDVEIIERSSQRYQDLSSTVKSLPLFEDAYEKVACFYES
                     LPWDIFK"
                     /name="nucleotidyl transferase AbiEii/AbiGii toxin family
                     protein"
     Typing          1417..1499
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="3.79e-36"
     Typing          1803..1901
                     /name="MOB_unknown"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="6.22e-45"
     Typing          2026..2281
                     /name="MOBF"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="96.512"
                     /coverage="89.0"
                     /evalue="1.21e-116"
     Typing          complement(847..1404)
                     /name="rep_cluster_2350"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="94.821"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tcaaaatgat gtgtttggaa tggttattat ggatgggtat tcctgctctg agtggaatat
       61 gaaaattctc tctggtaggt tagataagtg cgtgttttct ggtgatctga ataaagatat
      121 tattgaacca tgcaagtcag ttcctgttaa ggctgcagta tgtttccttt ttaaaaataa
      181 tacgcacctc catatatata acgcaggaga ttgccgtgta tataacaaaa gtggagtcct
      241 tctaacagag gataactcgg ttgcctggaa aagattaaag gaaaatggaa tcgataataa
      301 aaaaatacct cacctcgttt gttattgccc agacagaaat tatctaacat catttgttga
      361 tttctgctct gatgagataa ttttcaatca ttcagttttt gatttaaatg atgaaaacaa
      421 agaggttatt ttatgtactg atgggttttg ggagcatttt aatgatggta ctgttattga
      481 cctcatgaaa gataacccag aatctaactt ggctaaattt actaaaaata tcccgggtaa
      541 cgcagagaat catacggttt gctacgttag attcccttct tgatttcgtg ttttttgaag
      601 aagctattga gatcttcgtg tcatatagat aatctctttt ctgtaaaaga aaaaaaccgc
      661 ctttgcgggg cggttttctc ttaggttcaa agagtttgcg gctcgaagaa ccaaggtaac
      721 tggcttggag gagcgcagtc accaaaacct gttctttcag tttagcctta actggcgcat
      781 gacttcaaga ctaactcctc taaatcagtt accagtggct gctgccagtg gcgttaaggc
      841 gtgtcttacc gggttggact caagacgata gttaccggat aaggcgcagc agtcgggctg
      901 aacggggggt tcgtgcacac agcccagctt ggagcgaacg acctacaccg aactgagata
      961 ccaacagcgt gagctatgag aaagcgccac gcttcccgaa gggagaaagg cggacaggta
     1021 tccggtaagc ggcagggtcg gaacaggaga gcgcacgagg gagccaccag ggggaaacgt
     1081 ctggtatctt taagtcctgt cgggtttcgc cacctctgac ttgagcgtcg atttctgtga
     1141 tgctcgtcag gggggcggag cctatggaaa aacgcctgcg gcgcggcctt cttcctgctc
     1201 ctggtctttt gctcacatgt tctttccggc cttatcccct gattctgtgg ataaccgtgc
     1261 tgccgttttt gtgtaagtca gtaccgctcg ccgcagccga acgaccgagc gtagcgagtc
     1321 agtgagcgag gaagcggaaa agcgcctgga cgcgcatttt ctccttacgc atctgtgcgg
     1381 aatttcacac ccggcatggg gcacttttca tacaatctgc actgatgccg catagttaag
     1441 ccagtataca ctccgctatc gctacgtgac tgggtcaggg cttcgccccg acacccgctg
     1501 acgcgccctg gcgggcttgt ctgctgccga aaacgctcgc ggacaagccg tgagcgcctc
     1561 cgtcagcttc gttatgttcc tgtttcactt tcggtctcaa agcgaacctg gatgctgttc
     1621 tggagttctt ccgcgagttc gtgcagtcgt tcgcacatgg ccgcctgttc gtcggcatcc
     1681 agagcatcca gtttttcaag cagtgtcagg ctctggcttt tgataaatcg cgccatattc
     1741 agcgcagttt gttgctgttt gttcaccttc cgttgttctc cgtcagtacc gggtgtcggg
     1801 tggaccctga ccaggtggta attgtaagac gttgcgggcg acggtattac aattgcacat
     1861 cctgtcctgt ttttttagga cgtatcatgg cacagcatat caactgataa ataatccctg
     1921 tgcagtgcag ccgctgttgc ataaaatttc gctctgcgtc gagtgtttct taatcaataa
     1981 ttccgctgat actccggaaa aacgcgagtc tgttctcatg cctgaaatgc ccacacccca
     2041 cgcaaaaaca attttttgct gatttttctt tataaataga gagttatgac aaattagttc
     2101 ttcttgctct ctttgtgata tttaaaaaag cggtgtcggc gcggtgttgt agctgcgcca
     2161 acaccgcttt ttaggggtgg tactgactat tttcataaaa aacatcattt tatattaggg
     2221 gtgctgctag cggcgcggtg tgttttttta caggacgccc ctgggggcgc tgctaggggt
     2281 gtctgttcag atatgtagca atgagtcagg gattcacgaa ctgaaaatgt ccgaaaatgt
     2341 gtctcatggg caccgtatgc gcccaaaccg atcgccattc actttcatgc atagctatgc
     2401 agtgagctga aagcgatcct gacgcatttt tccggttttc gcttggtaaa acatctcttt
     2461 ttgcggtgtt cgcggcagaa tcgcgttcag cgcgttttag cggtgcgcgt aatgcgacgt
     2521 tatggtaaat gacgctgaaa aatgatcttt tacgctcatc gtttatgagc aacagatgtc
     2581 ctaatcatgg atttgaacta taaccgccgc tgaattgatc gcatgaggtg ttatgaaaac
     2641 ggtgatataa gtaaactttt tcttgacttc ctccttatta tcctataaaa taaatcctta
     2701 ggatttattt tataggatat caaaaatata aaaatggcaa atgcttgttt gttattattt
     2761 tttccttgac aatcaatctc taatagaata tacgtcctta ggacgtatat tctattagag
     2821 actaaaccga aaaggttgaa tatgtatctt atcgaagaag cgctaacgtc ttggttgttg
     2881 aatgaatata aaaaaccagt cataaccaaa gaagaaatct ctttgcagat ttaccttttt
     2941 tatttaaaaa aagaatataa tggtgagagg atatatcaaa ttagaaagaa caaagcagga
     3001 cctaatgaat ttgaaaaaaa tatattaaaa ttattaaagt caggggtttt atcaagagtt
     3061 gaaagtaacg ataagcatca tgcttacccc catttaattg gcggtttcta tgaggtcttt
     3121 tttgttaaag gtaacgatgg ttctccggaa aatgatatag tgtgctctac gtatccatat
     3181 ggatacttat cctatttatc cgctatggat tggcataaca tcacagataa aatacccaag
     3241 ataatccact ttacgacatg tcgttccgaa cagtggaaga ataagttcta tcatgatttt
     3301 caaaaggata atcctgatat agacgaagcc aaacaattca tgcctagatt tccaagaaat
     3361 tctgaggtca atggaataaa aattatcgtt acacaagaaa caaattatgt tgagccaatg
     3421 aaggctcgta attcccctgt cagggtatca tctatcggta agacctttat ggatatgacc
     3481 aggcggcctg attactgtgg tggtgaggag catgtattgg aatcatttat tgagcacggt
     3541 aaaaaatatg cacctctgat tataaaggaa gtcgataagc ttggccgtca tattgacaag
     3601 gtaagggttg gattcatttt ggatagaatt attggggtta ataataaaaa aataagcgaa
     3661 tggaaacaag aggcgggtaa atacagaggt agttcgaaag tgctatctcc aaagagtcca
     3721 ttctcacctt actttgatga agaatggttt atttctatta atgttgatat ggttaagtct
     3781 tatggaaaaa gaaattaata attggatcga agagtctggt gggaagtaca ggttgatgcg
     3841 gcaggctgta catataatac ttaaatctat ttctatagag gagagtttga atgaaatgat
     3901 ggttatgaag ggagggactc ttcttggtgt taagcatggt agtgatagat acacaaagga
     3961 tattgatttt tctaccgaaa aaaaactttc tgaaattgac ttgggggatt ttttcaatag
     4021 gtttaatgac tcaatggatg ttgctgaggc tgaattggga tatggtatta aatgtaaagt
     4081 tcaatctcat aaaattcaac ctaatgcaca aggaacattt ccaactgtac agataaatat
     4141 agccttttgc gatcgttcta atgcgtctgc aatgaaaagg cttgaatcta atcaatcacc
     4201 ttcagtgata aatatcgatt ttagctttaa cgaaaaaacg tatgattttg actttttatc
     4261 attagatggt gatgatgaca atgatagcgt aaagacctac agcttaactg atttgatggc
     4321 tgaaaaatat cgatccgttt tgcaacaaaa agttagagag agaaatcgag agcaagatat
     4381 atatgatatc aattatcttt taggtaaata tgagttttct cggcaagata agtataaaat
     4441 actggagtct cttttaaaaa agagtgaagg taaacaattg gataatctct taaacgttaa
     4501 aggtataagg gatgtagaaa ttatcgagcg ttccagtcag cgatatcagg atttatcatc
     4561 caccgttaaa tcattacctc tttttgaaga tgcttatgaa aaagttgcct gtttctatga
     4621 aagtcttccg tgggatatat tcaaatgata gcgttcagtt ttagtgatat tggtaacaga
     4681 tgtgaaaact tagacttatt gtctacgata aattg
//
