LOCUS       NZ_OX359184             5875 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Klebsiella pneumoniae strain KP34 isolate 2018-347802-001-01 plasmid
            p02, complete sequence.
ACCESSION   NZ_OX359184
VERSION     NZ_OX359184.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111391102
            Assembly: GCF_947164515.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Pongolini,S., Scaltriti,E. and Menozzi,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) IZSLER, Risk Analysis and Genomic
            Epidemiology Unit, IZSLER, Risk Analysis and Genomic Epidemiology
            Unit, Strada Mercati 13/A, 43126, Parma, Italy, Italy
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 02:36:50
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,459
            CDSs (total)                      :: 5,338
            Genes (coding)                    :: 5,208
            CDSs (with protein)               :: 5,208
            Genes (RNA)                       :: 121
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 83
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 130
            CDSs (without protein)            :: 130
            Pseudo Genes (ambiguous residues) :: 0 of 130
            Pseudo Genes (frameshifted)       :: 60 of 130
            Pseudo Genes (incomplete)         :: 79 of 130
            Pseudo Genes (internal stop)      :: 22 of 130
            Pseudo Genes (multiple problems)  :: 28 of 130
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX359184.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..5875
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP34"
                     /isolate="2018-347802-001-01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p02"
                     /geo_loc_name="Italy"
                     /collection_date="2018-11"
                     /collected_by="Baggiovara Hospital in Modena"
     gene            complement(join(5709..5875,1..700))
                     /locus_tag="OM989_RS27175"
     CDS             complement(join(5709..5875,1..700))
                     /locus_tag="OM989_RS27175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001335763.1"
                     /GO_function="GO:0005215 - transporter activity [Evidence
                     IEA]"
                     /GO_process="GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="WP_001335763.1"
                     /translation="MIKGMLFAFLAAFSWGAAIVMSKKGVEELDAGGVFFWQICSAVIL
                     SWIVLFIKRKKLPLNSKAILAYATGVFEPFLAYTFTLYGLYFISAGSASIIFSLESVFI
                     LVLSVLICSVKINSPQYFILFLIGAIVGSILVALPDISNGSNNIVGYCLVVAGVLSAAF
                     YVVISSRLIKSFEPITLLSGQLTFSLILSSLFIFISKSSIYLPLESVIIVFSSGILQYF
                     LAFCFYLNSLRWLPVHLAGIMLYFIPLVALFLSWLFLDEQFTFLQGVGFIVTVLSVYFL
                     NRKYSEE"
                     /name="DMT family transporter"
     gene            complement(702..1754)
                     /locus_tag="OM989_RS27180"
                     /old_locus_tag="KPNEU34_KP34_05259"
     CDS             complement(702..1754)
                     /locus_tag="OM989_RS27180"
                     /old_locus_tag="KPNEU34_KP34_05259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001557502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_021517772.1"
                     /translation="MNLQQRINKLPQLSSSFSFGKDIDNIHSFIFNETSKDKIEDLLRK
                     WVSGNQPCVFGKLASKKIKGLDFHLSIVNSPQLYNDDGHLFDFLRNERVRFKERARRGE
                     VSAHLIYFIHPQLAFARPSEELVDIQKYICSLHMPECYPIKEDVIYTESVPFQDKDGLK
                     IYKAGVNVFYSSAHRTRNHDRRIPGGILISVNAPGHFMRLAIEKGFYKDQEQALADIRN
                     MTIQSVGNGGYSHPEGISTTWHSESKLDRFGCPVHTGNSSYYSGFYHTDVLIPGELTKD
                     ERLLHEIDNSDPMIFNWNVLFYVSLEEFPIDDPYYGEFIGVPVDDASMFFNSFQPRKFE
                     NNPLYEKEDD"
                     /name="hypothetical protein"
     gene            complement(2474..2707)
                     /locus_tag="OM989_RS27185"
                     /old_locus_tag="KPNEU34_KP34_05261"
     CDS             complement(2474..2707)
                     /locus_tag="OM989_RS27185"
                     /old_locus_tag="KPNEU34_KP34_05261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_021520366.1"
                     /translation="MTELERHLLNALEQLQQDYMQRLNEWENAFVELQKMFSLTQRDNA
                     MLNGRVMQLSQQVQHLSERTERLSQLYSENWR"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2714..3244)
                     /locus_tag="OM989_RS27190"
                     /old_locus_tag="KPNEU34_KP34_05262"
     CDS             complement(2714..3244)
                     /locus_tag="OM989_RS27190"
                     /old_locus_tag="KPNEU34_KP34_05262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001673158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_001673158.1"
                     /translation="MSNLLQTGAEFEKKLKERAESTEKMLNDEFRKLEESVNRELTSNE
                     SLIRNAINDHTTALKELLERYQKTTVDTMDAHWKTVLKMSVKRWLWLIIVSVLMFATTG
                     SLLWYQGMKINANMNILREQKESLEKLNAKTWGVRYHEDSNGRFLVLPKGMKAETNWTK
                     DNGKLNAVRLVQE"
                     /name="MbeB family mobilization protein"
     gene            complement(<3282..3980)
                     /locus_tag="OM989_RS27315"
                     /pseudo=""
     CDS             complement(<3282..3980)
                     /locus_tag="OM989_RS27315"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(3922..4245)
                     /locus_tag="OM989_RS27200"
                     /old_locus_tag="KPNEU34_KP34_05263"
     CDS             complement(3922..4245)
                     /locus_tag="OM989_RS27200"
                     /old_locus_tag="KPNEU34_KP34_05263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024188420.1"
                     /translation="MLTIRVTDDEHARLLERCEGKQLAAWMRRVCLGEPVARSGKLPTL
                     APPLLRQLAAIGNNLNQTARKVNSGQWSSGDRVQVVAALIAIGDELRRLRLAVREQGAR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            4311..4502
                     /locus_tag="OM989_RS27205"
                     /old_locus_tag="KPNEU34_KP34_05264"
     CDS             4311..4502
                     /locus_tag="OM989_RS27205"
                     /old_locus_tag="KPNEU34_KP34_05264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_021539356.1"
                     /translation="MTKQEKTALNMVRFIRSQTLTLLEKLNELDADEQADICESLHDHA
                     DELYRSCLARFGDDGENR"
                     /name="Rop family plasmid primer RNA-binding protein"
     Typing          complement(4597..4678)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="98.795"
                     /coverage="100.0"
                     /evalue="6.23e-34"
     Typing          complement(5135..5322)
                     /name="rep_cluster_2401"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="100.0"
                     /coverage="100.0"
                     /evalue="4.63e-94"
     Typing          complement(2371..3932)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="99.232"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 aacgcaagga gttcaagtaa aaacaaaaag ctaaaaaata ttgtaatatt ccagatgaaa
       61 aaacaataat cacggattcc aacggaagat aaattgagga tttagatata aaaataaaga
      121 gcgatgacag tataagggag aatgtcaact gtccgctcaa taatgtgata ggctcaaacg
      181 atttaataag gcgagacgat ataacaacat aaaatgctgc cgataacaca ccggcaacaa
      241 caagacaata tccaacaata ttattcgatc cattactgat gtctggcaag gctaccaaaa
      301 tactgccaac aattgcacct ataaggaaca atataaaata ttgcggggaa ttaattttaa
      361 ctgagcaaat aagaacagac aacaccaata taaacactga ttcaagtgaa aaaataattg
      421 atgcgcttcc tgctgaaata aaataaagtc cgtagagtgt aaaagtatac gctaagaatg
      481 gttcaaaaac gcctgtcgca taagcaagta tcgcttttga gtttaatggg agtttttttc
      541 tttttataaa aagaactatc caagatagta ttactgcact acaaatctgc cagaaaaaca
      601 cccctccggc atctagttct tcaactcctt ttttgctcat tacgatagct gccccccatg
      661 agaacgctgc taaaaaagca aaaagcattc ctttaatcat attaatcatc ctctttctca
      721 taaagggggt tgttttcaaa tttccttggt tgaaaggagt taaaaaacat agatgcatca
      781 tctacaggaa caccaataaa ctctccataa taaggatcat ctataggaaa ctcttctaat
      841 gaaacataaa acaatacatt ccagttgaag atcattggat cactattatc tatttcatgg
      901 agcaatcttt catccttagt taattctcct ggaattaata catcagtatg ataaaaaccg
      961 ctgtaataag aactattacc ggtgtgcact gggcatccaa aacgatccaa tttagattct
     1021 gaatgccatg ttgtagaaat cccttccgga tgtgaatacc caccgttacc aacagactga
     1081 atagtcatgt tacgaatatc cgctaacgct tgttcttgat ctttatagaa acctttttct
     1141 atcgccagcc tcataaaatg ccccggggca tttacagaaa taagtattcc ccccggtatt
     1201 cttctatcat gatttcttgt tctatgagca gaagagtaaa aaacattaac accagcctta
     1261 tatattttta gcccatcttt atcctgaaat ggtacgcttt cagtataaat aacatcctct
     1321 tttattggat agcactctgg catatgcagc gaacaaatat atttttgtat gtccactaac
     1381 tcttctgatg gacgagcaaa tgcaagttgt ggatgaataa aataaatgag atgcgcactg
     1441 acctctcctc ttcttgcgcg ttctttaaaa cgaactcttt cattacgcaa aaaatcaaac
     1501 aaatgaccat catcattata tagttggggg ctatttacaa tagataaatg gaaatcaagc
     1561 cctttaattt tcttgcttgc caatttacca aatacacagg gctgattgcc tgacacccat
     1621 tttcttagta aatcttcaat tttatcttta gaagtttcgt taaagataaa tgaatgaata
     1681 ttatcaatat cttttccaaa tgaaaaactg gatgataatt gtggtagttt atttatacgt
     1741 tgttgaagat tcatgaaagc tcccacaaga cacctcatat attttttata tactgaaact
     1801 acattatatt tattaccgac gtaaaacgaa ataatttatt atcgttaccg atattttaaa
     1861 aaatcattat ttgcacagtg ttcgagttgt tagtatcact ccttcctgaa aatccgctcc
     1921 atttaccata acgtcgcatt gtacgcaccg ccaaaacgcg ttcggtgcga tcacggcagc
     1981 agacaggtaa aaatggcaac aaaccacccg aaaaactgcc gcgatcgcac ccgataaatt
     2041 ttaaccacat gcatagctat gcagccatgt gaatcacgca ggaattgcca gccagagact
     2101 gctgaaacgg atttttttca tactttcgga aaggcagaag acggaaccgg agcggaaaaa
     2161 cagaaattca tgggaatgag cgcgatctgg caataacggc aaaacacagc aacaaagaca
     2221 caccagaatc gcgcccgcat gcgttttaac gcgttcctgt gttttcagca agctctgact
     2281 gaagcgcgtt cccggtgccc ccgaaccaac cattatccca aaaaatgcac cggaaacgcg
     2341 ctgccaacat tttagcctgt ctctggttac catcccagcg aagggccatc cagtgtccgt
     2401 tcctgaattt ccggctggcg ctcccgctcc agggataacg catattcgcg ctcctgtatc
     2461 agccgctcat cccttatctc cagttctcgc tgtataactg gctcaagcgt tctgtccgct
     2521 cgctcaagtg ctgcacctgc tgactcaact gcatgactcg cccgttcagc atcgcgttgt
     2581 cccgttgcgt aagcgaaaac attttctgca attccacgaa ggcgttctcc cattcgttca
     2641 gccgctgcat atagtcctgt tgcagttgct ctaatgcgtt cagcaaatgt ctttccagct
     2701 ccgtcatgct ctgtcactcc tgcaccagtc tcactgcgtt cagtttgccg ttgtccttcg
     2761 tccagttcgt ttcggctttc atccccttcg gcaacaccag aaaacgtccg ttgctgtcct
     2821 cgtgataacg cacgccccat gtcttcgcgt tcagcttctc cagactctct ttctgctcgc
     2881 ggagaatatt catattcgcg tttatcttca tgccctggta ccacagcaga ctcccggtcg
     2941 tggcaaacat cagtactgag acgataatca gccacagcca gcgtttcacg ctcattttca
     3001 gtacggtttt ccagtgcgcg tccatcgtat cgacggtcgt tttctgatac ctctccagca
     3061 gttctttcag ggctgttgta tggtcgttga tagcgttcct gattaaagat tcgtttgagg
     3121 tcagttccct gtttacagat tcttcgagct tcctgaactc gtcgttcagc attttctctg
     3181 tagattcggc tctctctttc agctttttct cgaactccgc gcccgtctgt aaaagattgc
     3241 tcataaaacg ctcctttcag tctgatattc ctcccgccgt tcgggtctgc aatgctgata
     3301 ctgcttcgcg tcaccctgac cacttcaagc cccgcctctg tgagcgcctg aatcacatcc
     3361 tgacggcctt ttatctctcc ggcatggtaa agcgcgtcta tcccgcgtgt gacgccctca
     3421 gcaagcgcct gtttcgtttc cggcaggtta tcaggaaggg tcagcgtccg gcggttctcc
     3481 ggggcgttgg ggtcatgcag accgtaatgg tgattcacca gcgtctgcca ggcatcaatt
     3541 ctcggcctgt ctgcccggtc gtagtacggc tggaggcgtt ttccggtctg tagctccatg
     3601 ttcggaatga caaaattcag ctcaagccgt cccttgtcct ggtgctccac ccacaggatg
     3661 ctgtactgat ttttctcgag accgggcatc agtacacgct caaagctcgc catcactttt
     3721 tcacgccctc caggcggcag ctccttctcc gcgaacgaca gaacacctga cgtgtatttc
     3781 ttcgcaaatg gcgtggcatc gatgagttcc cggacctctt ccggattccc ctgaagcacc
     3841 gttgcccctt cccggttacg ctcccttccc agcaggtaat caaccggacc actgccacca
     3901 ccttttcccc tggcatgaaa cttaactatc atcccgcgcc ccctgttccc tgaccgccag
     3961 acgcagccgg cgcagctcat ccccgatggc tatcagtgcg gccaccacct gaacccggtc
     4021 accggaagac cactgcccgc tgttcacctt cctcgctgtc tggttaaggt tattcccgat
     4081 agcggccagc tgacgcagta acggcggtgc cagtgtcggc agcttcccgg aacgggcaac
     4141 aggctcaccc aggcagaccc gccgcatcca tgccgccagt tgtttaccct cacagcgttc
     4201 cagtaaacgg gcatgctcat catcagtcac ccgtatcgtg agcatcctct cgcgtttcat
     4261 cggtatcatt acccccatga acagaaatcc cccttacacg gaggcatcca gtgactaaac
     4321 aggaaaaaac cgcccttaac atggtccgct ttatcagaag ccagacatta acgctgctgg
     4381 agaagctcaa cgaactggac gcggatgaac aggcagacat ctgtgaatcg cttcacgacc
     4441 acgccgatga gctttaccgc agttgcctcg cacgcttcgg ggatgacggt gaaaaccgct
     4501 gacacatgca gctcccggag acggtcacag cttgtctgtg agcggatgcc gggagcagac
     4561 aagcccgcca gggcgcgtca ggccgttgac ctttggggtg tcggggcgaa gccctgaccc
     4621 agtcacgtag cgatagcgga gtgtatactg gcttaatcat tcggcatcag tgcggattgt
     4681 atgaaaagtg cgccatgtcg ggtgtgaaat gccgcacaga tgcgtaagga gaaaatgcca
     4741 gttcaggcgc tcttccgctt cctcgctcac tgactcgcta cgctcggtcg ttcggctgcg
     4801 gcgagcggac tctcctttct caaaaacgct aaccctgtta tccacagaac ccggggataa
     4861 accaggaaag aacatgtgcg caaaaaacga aaccccggaa aaggccgcgc cggaggcgct
     4921 ttttccatag gctccgcccc cctgacggac ttcacaaaac agacactttt tcggtgcatc
     4981 tgtgggagcc ttgcggctca accatgaaat ccgccagcgg tggcgaaacc cgacgtggct
     5041 taaagatcat caccgtttcc ggtgaatcgc tccctcctgc gcccccacgt tcccgccata
     5101 tcgattaccg gatacctttt ccgcctttct cccttacggg acacgtggcg ctttctcata
     5161 gctcacgtct tctggtatct cggggcgact taggcagttc gctccgggct gggctgtatg
     5221 caggaacccc ccgttcagcc cgactgctgc gccttctccg gtaactgttc tcttgggtcc
     5281 aacccggaaa agacaccaca aagcgccact ggcagcagcc attggtaaaa gtcatgtgcg
     5341 agatatttag agagtacttg aagtggctgc cggagtgcgg ctacactaga agaacaattt
     5401 tggtgactcg tctcgcataa gacagttacc tggttaagca gtctgcaagc tgacttaacc
     5461 ttcgatcaaa ccgccctgca aggcggtttt ttcgtttaca ggcagcagat tacgcgcaga
     5521 aaaaaaggat ctcaagagga tcctttgatc tttttgttac aaacgtctct atttgactcc
     5581 cctgagagcg ttttagcgcg cctctgcccc ccttggttac attccgacac cagaaacgct
     5641 cccgtttttt acgtgcattt ggcacggtat cgatggaggc cggggggggg gcaatcctga
     5701 acagaatgtt actcctctga gtattttctg ttaagaaaat atacacttag cacagttaca
     5761 ataaatccta ccccctgtaa gaatgtgaat tgttcatcca aaaacaacca tgacaaaaat
     5821 aatgcaacta gcggaataaa gtacaacatt atccctgcca aatgaactgg gagcc
//
