LOCUS       NZ_OX359179             3374 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Klebsiella pneumoniae strain KP47 isolate 2018-047100-007-01 plasmid
            p04, complete sequence.
ACCESSION   NZ_OX359179
VERSION     NZ_OX359179.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111391101
            Assembly: GCF_947163785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Pongolini,S., Scaltriti,E. and Menozzi,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) IZSLER, Risk Analysis and Genomic
            Epidemiology Unit, IZSLER, Risk Analysis and Genomic Epidemiology
            Unit, Strada Mercati 13/A, 43126, Parma, Italy, Italy
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 02:24:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,439
            CDSs (total)                      :: 5,315
            Genes (coding)                    :: 5,169
            CDSs (with protein)               :: 5,169
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 75 of 146
            Pseudo Genes (incomplete)         :: 81 of 146
            Pseudo Genes (internal stop)      :: 23 of 146
            Pseudo Genes (multiple problems)  :: 30 of 146
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX359179.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3374
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP47"
                     /isolate="2018-047100-007-01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p04"
                     /geo_loc_name="Italy"
                     /collection_date="2018-02-07"
                     /collected_by="Policlinico SantOrsola in Bologna"
     gene            complement(<78..491)
                     /locus_tag="ONI05_RS27220"
                     /pseudo=""
     CDS             complement(<78..491)
                     /locus_tag="ONI05_RS27220"
                     /inference="COORDINATES: protein motif:HMM:NF015397.3"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo=""
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /name="relaxase/mobilization nuclease domain-containing
                     protein"
     gene            complement(481..804)
                     /locus_tag="ONI05_RS27145"
                     /old_locus_tag="KPNEU47_KP47_05263"
     CDS             complement(481..804)
                     /locus_tag="ONI05_RS27145"
                     /old_locus_tag="KPNEU47_KP47_05263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000956000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobC family plasmid mobilization relaxosome
                     protein"
                     /protein_id="WP_024132211.1"
                     /translation="MLTIRVTDEEHARLLERCEGKRLAEWMRRVCLGEPVARTGKLPTL
                     SPPLLRHLAAIGNNLNQTARKVNSGQWSSIDRVHVVAALMAIEGELRQLRQAVREQGVR
                     DDS"
                     /name="MobC family plasmid mobilization relaxosome protein"
     gene            868..1059
                     /locus_tag="ONI05_RS27150"
                     /old_locus_tag="KPNEU47_KP47_05264"
     CDS             868..1059
                     /locus_tag="ONI05_RS27150"
                     /old_locus_tag="KPNEU47_KP47_05264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000165979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rop family plasmid primer RNA-binding protein"
                     /protein_id="WP_000165979.1"
                     /translation="MTKQEKTALNMARFIRSQTLTLLEKLNDLDADEQADICESLHDHA
                     DELYRSCLARFGDDGESN"
                     /name="Rop family plasmid primer RNA-binding protein"
     gene            1777..2103
                     /locus_tag="ONI05_RS27155"
     CDS             1777..2103
                     /locus_tag="ONI05_RS27155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000776994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000776994.1"
                     /translation="MKLSAPVAELSRVRSPSSQLPQPQTVFANTQASAKKGFFSGVWGG
                     CEAEKFLKNTEGSCKLNELVSVAANNRLHRNIEEVENLNEPEEARLMAGFFRSTLPDER
                     SQVK"
                     /name="hypothetical protein"
     gene            complement(2377..2610)
                     /locus_tag="ONI05_RS27160"
                     /old_locus_tag="KPNEU47_KP47_05265"
     CDS             complement(2377..2610)
                     /locus_tag="ONI05_RS27160"
                     /old_locus_tag="KPNEU47_KP47_05265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000137389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeD family mobilization/exclusion protein"
                     /protein_id="WP_264387685.1"
                     /translation="MTELEGHLLNALEHLQQDCMRRLNEWESAFAELQKMHEVTQRNNA
                     ILNERVVILSQQVQRLAGQVDRLSRLFIANNS"
                     /name="MbeD family mobilization/exclusion protein"
     gene            complement(2617..3177)
                     /locus_tag="ONI05_RS27165"
                     /old_locus_tag="KPNEU47_KP47_05266"
     CDS             complement(2617..3177)
                     /locus_tag="ONI05_RS27165"
                     /old_locus_tag="KPNEU47_KP47_05266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000067488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MbeB family mobilization protein"
                     /protein_id="WP_000067487.1"
                     /translation="MSNLLQMGTDFEKKLKERAASTENMLNSEFRKLEESVDKALSLNR
                     QKIRDAISEHTTSVKKQLDTLSTTVSMQFSTTEAELSRQQKKLLWRVIKGRILFPALTA
                     LSVTGGIFLGCWGLMEWQESKIAKNILTIREQENTLAKLEAKTWGVTFVNGENGKFLVL
                     PDGVKGENTWTVGDKNAVRLVRE"
                     /name="MbeB family mobilization protein"
     Typing          complement(1141..1221)
                     /name="MOBP"
                     /typing="oriT"
                     /tool="MOB-suite"
                     /identity="87.805"
                     /coverage="93.0"
                     /evalue="8.68e-18"
     Typing          complement(4..491)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="98.773"
                     /coverage="99.0"
                     /evalue="6.06e-104"
     Typing          complement(2295..3373)
                     /name="MOBP"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="90.137"
                     /coverage="99.0"
                     /evalue="0.0"
ORIGIN
        1 ggcagattat ttggcgtgac aagcgtccgt ctgttctccg gtgcgttcgg gtcacgcagc
       61 ccgtaatgat gattaaccag cgtctgccag gcatttatcc tcggcctgtc cgcgcggtcg
      121 tagtacggct ggaggcgctt accgctctgt agctccatgt tcgggatgac aaaattcagt
      181 tcgagccgcc ccttatcctg gtgttccacc cagagaatgc tgtactggtc tttttcgaga
      241 ccgggcataa gaacacgctc aaagctcgtc atcactcttt cgcgttcacc cggcggtaac
      301 tccttctccg cgaacgacag aacgcctgaa gtgtatttct tcgagaatgg cgtggaatca
      361 atgagttccc gcacttcttc cgggttaccc cggagcaccg ttgcgccttc gcggttacgc
      421 tcccgcccca gcaggtaatc gaccgggcca cttccaccgc ctttccccct ggcatgaaat
      481 ttaactatca tcccgtaccc cctgttccct gacagcctgc cgcaactggc gcaattcacc
      541 ctcgatggcc atcagtgcgg ccaccacatg aacccggtca atcgaagacc actggccgct
      601 gttcaccttc cgggctgtct ggttcaggtt gttcccgatg gcagccagat gccgcagcaa
      661 tggcggcgat agtgtcggca gttttcctgt gcgtgcaacc ggctccccca gacagacccg
      721 ccgcatccat tccgccagtc gtttaccctc gcagcgttcc agtaaccggg cgtgctcctc
      781 atcggtaacc cgtatcgtga gcatcttctc gcgtttcatc ggtatcattc cccctaacaa
      841 atcccccata caaggagcct taagaccatg accaaacagg aaaaaacagc ccttaacatg
      901 gctcgcttta tcagaagcca gacgctaacc ctgctggaaa aactcaacga tctggacgcg
      961 gacgaacagg cagacatctg cgaatcactt cacgaccacg ccgacgaact ctaccgcagt
     1021 tgcctcgcac gcttcggcga tgacggtgaa agcaactgaa acatgcagct cccggagacg
     1081 ttcacagctt gcctgtgagc ggatgccggg agcagacaag cccgccaggg cgcgtcagtg
     1141 cgggtgtcgg ggcgcagccc tgacccagtt cacagagcga tagcgatgtg tatactggct
     1201 tatctcattt tgcatcggtg cagagtggat gggaagtgca ccatgtcagg agtaaaaagc
     1261 cgcacagatg cgtaaaaaca gcgcacccga taaacagcac acacgcggac actggcacag
     1321 gcgcgtaagt gcacaatgct tgcatctgtg actcttccgc ttcctcgccc actcgctcac
     1381 tacgttcggt cgctggggct gcggcgagcg gtgggatcac actcgttgtg atgcagatcc
     1441 gttttttttt tttgcactgg agttatcagg agttgcggtg cacatgggat cgtgcgatat
     1501 gccggatggt gaaaggttgg agggaacggc aacaactcac ccctcccagt gaagggacgg
     1561 gtagtttgcc gctctcgata tgccggacgg agccaaggcc atcgatcacg gggcgcgtca
     1621 gtggaagaac ccgcgcctgc gtgacgtatg cgtcttcgcc gcaccatctc acccgtcacg
     1681 ccaccacata ccgggaactg ccgccaaggt ctaactcaac caatctagcc gcgctacata
     1741 cggtttttgt ggcaactcat caggtgtccg ctgtcgatga aactctctgc gccggtagcg
     1801 gaactctcac gcgtgcggtc gccgtcgtca cagctccccc aaccgcaaac ggtctttgca
     1861 aacacgcaag catctgcaaa aaaaggattt ttttcgggtg tctggggagg ctgtgaggcg
     1921 gaaaaattct tgaagaatac agaaggttca tgcaaactga atgaactggt ttctgtcgcc
     1981 gcaaacaaca gactccacag gaacattgag gaggtcgaaa acctcaatga acccgaagaa
     2041 gctcgcctaa tggcgggctt ttttcgttct acgctccccg acgaaagatc gcaagtgaaa
     2101 taacgagatt tttcacgtct ttacgctcaa aaagcaaaaa aaccatgttt tcccctggct
     2161 gaatccccaa aaacgcgtga aatgcgtttt caggatgttg catagctatg cacaaatacg
     2221 gcacacgatt tgtttcgctc gccccagccg tcgaacgggt caaaatggca agatttcgtc
     2281 acttccccgg tcacatctcc attgatggcc cactccgaac ccgtgccgcg cgttcctgta
     2341 cctcatgtct gtaccgggca cgctcctgtt catcccttag ctgttgttcg cgataaataa
     2401 ccgactcaag cgatccactt gcccggctaa tctctgcacc tgctgactca atatcacgac
     2461 gcgctcgttc agtatcgcgt tgttccgttg cgtaacctcg tgcatcttct gcaattccgc
     2521 gaaggcgctc tcccactcgt tcagccgccg catacagtcc tgttgcaaat gctctaaggc
     2581 gttcagcaaa tgcccttcca gttccgtcat actcgtttac tccctgacca gcctcacggc
     2641 gttcttgtcg cccaccgtcc aggtgttttc ccctttcacc ccgtccggca acaccagaaa
     2701 tttcccgttc tcgccattga cgaacgtcac cccccaggtt tttgcctcga gtttcgccag
     2761 cgtgttttcc tgctctctga tagtcaggat atttttcgca atcttgcttt cctgccactc
     2821 catcagcccc cagcacccca ggaaaatgcc gcccgtgacg ctgagcgcgg tcagcgccgg
     2881 aaacagtatc cgccctttga tcacccgcca gagcagtttt ttctgctgcc gggacagttc
     2941 ggcctctgtg gtgctgaact gcatgctcac ggtggtgctc agcgtatcca gttgcttttt
     3001 cacggatgtt gtatgttcgc tgatagcgtc tctgattttc tgcctgttta agctcaatgc
     3061 cttgtctaca gactcttcga gcttcctgaa ctcgctgttc agcatgttct cggtagaagc
     3121 ggctcgctct ttcagtttct tctcgaagtc tgttcccatt tgtaaaagat tgctcataca
     3181 gcgccccctt tagcctgaga ttccgccccc cctccgggtc ggcaatactg atgctgcttt
     3241 tggttgtcct caccacctca aaacctgccg ctgtaagcgc ctctgtgaca tcctgacgcg
     3301 tttttattgc tccggcatgg taaagagcct caagaccccg tgtaatcgct tctgcggcct
     3361 cctgtttcgc tttt
//
