LOCUS       NZ_OX359178             3751 bp    DNA     circular CON 22-NOV-2023
DEFINITION  Klebsiella pneumoniae strain KP47 isolate 2018-047100-007-01 plasmid
            p03, complete sequence.
ACCESSION   NZ_OX359178
VERSION     NZ_OX359178.1
DBLINK      BioProject: PRJNA224116
            BioSample: SAMEA111391101
            Assembly: GCF_947163785.1
KEYWORDS    RefSeq.
SOURCE      Klebsiella pneumoniae
  ORGANISM  Klebsiella pneumoniae
            Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales;
            Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella.
REFERENCE   1
  AUTHORS   Pongolini,S., Scaltriti,E. and Menozzi,I.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-OCT-2022) IZSLER, Risk Analysis and Genomic
            Epidemiology Unit, IZSLER, Risk Analysis and Genomic Epidemiology
            Unit, Strada Mercati 13/A, 43126, Parma, Italy, Italy
COMMENT     ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI RefSeq
            Annotation Date                   :: 11/22/2023 02:24:02
            Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline
            (PGAP)
            Annotation Method :: Best-placed reference protein set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 5,439
            CDSs (total)                      :: 5,315
            Genes (coding)                    :: 5,169
            CDSs (with protein)               :: 5,169
            Genes (RNA)                       :: 124
            rRNAs                             :: 9, 8, 8 (5S, 16S, 23S)
            complete rRNAs                    :: 9, 8, 8 (5S, 16S, 23S)
            tRNAs                             :: 86
            ncRNAs                            :: 13
            Pseudo Genes (total)              :: 146
            CDSs (without protein)            :: 146
            Pseudo Genes (ambiguous residues) :: 0 of 146
            Pseudo Genes (frameshifted)       :: 75 of 146
            Pseudo Genes (incomplete)         :: 81 of 146
            Pseudo Genes (internal stop)      :: 23 of 146
            Pseudo Genes (multiple problems)  :: 30 of 146
            ##Genome-Annotation-Data-END##
            REFSEQ INFORMATION: The reference sequence is identical to
            OX359178.1.
            The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            COMPLETENESS: full length.
FEATURES             Location/Qualifiers
     source          1..3751
                     /organism="Klebsiella pneumoniae"
                     /mol_type="genomic DNA"
                     /strain="KP47"
                     /isolate="2018-047100-007-01"
                     /host="Homo sapiens"
                     /db_xref="taxon:573"
                     /plasmid="p03"
                     /geo_loc_name="Italy"
                     /collection_date="2018-02-07"
                     /collected_by="Policlinico SantOrsola in Bologna"
     gene            complement(join(3425..3751,1..72))
                     /locus_tag="ONI05_RS27120"
     CDS             complement(join(3425..3751,1..72))
                     /locus_tag="ONI05_RS27120"
                     /inference="COORDINATES: ab initio prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_001222916.1"
                     /translation="MRISNIEWLKKRIGFIRKLGEQTARQRQIIDLLDNEAGLTEQERK
                     LLHVLATAEKNDLQAQESERKQAVQKRIEGKKQRRERNHRLFLAAGLLIEAGLVDTKTG
                     ELCYKKDRILQALKEIKYDLETSPNPDA"
                     /name="hypothetical protein"
     gene            249..1175
                     /locus_tag="ONI05_RS27125"
                     /old_locus_tag="KPNEU47_KP47_05260"
     CDS             249..1175
                     /locus_tag="ONI05_RS27125"
                     /old_locus_tag="KPNEU47_KP47_05260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MobA/MobL family protein"
                     /protein_id="WP_014342223.1"
                     /translation="MATYHLSVKFGGKGQAANHADYIERKEKYRDRQDLEYSAHGNMPE
                     WARDNPSHFWQAADQFERANGSTYRELEIALPRELTAEQRLELVQDFVRQEAGERHAWS
                     FAIHNPKASIDGGEQPHAHIMMSQRVNDGIERTPEQYFRRYNARYPERGGAKKDSGSLT
                     LTQQKEQLRELRKRWEVKHNEHMRKHGFERGFIDCRTLKEQGIERRPEVHLGFEAAGRL
                     DDAQRHDIMQKRSEPDYSRHLEQARTVGYDIREWLDTPVKQHELVRRLQHDVAREHGFD
                     MRDRVSRQNRTEPERVKSPSRGFSMGF"
                     /name="MobA/MobL family protein"
     gene            1178..1711
                     /locus_tag="ONI05_RS27130"
                     /old_locus_tag="KPNEU47_KP47_05261"
     CDS             1178..1711
                     /locus_tag="ONI05_RS27130"
                     /old_locus_tag="KPNEU47_KP47_05261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="WP_000168772.1"
                     /translation="MASTEEKLLTLLLSVEHLQHTAMEQQKAVADSLAVARETLRGYRD
                     ISDGVAKQVRDEVRNEVQKLDVAGLIGERISQDFQRLEESVANMKANADALNRDIATIH
                     SNIVQEYNTLKGYSWKWLGGVSVAFLVMFCVLGWGMKTMLDRNYNATAAVYQKVVTLED
                     KLAEKPVTGKSRKN"
                     /name="hypothetical protein"
     gene            2145..3164
                     /locus_tag="ONI05_RS27135"
                     /old_locus_tag="KPNEU47_KP47_05262"
     CDS             2145..3164
                     /locus_tag="ONI05_RS27135"
                     /old_locus_tag="KPNEU47_KP47_05262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_005221104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation protein"
                     /protein_id="WP_001271364.1"
                     /translation="MSAALQYFEENLPHRPYHTDDLAFGLRISGKGRALLARYIQQNQP
                     HAQFWLVFDVDREGAAIDWSDRNAPAPNITVKNPVNGHAHLLYALNIAVRTAPDASVKA
                     LKYAAAVERSLCEKLCADVNYSGLICKNPFHLEWQVMEWREDAYTLDELADYLDLSASE
                     RRSIDKHYGMGRNCHLFEMTRKWAYRAIRQGWPAFSQWLEAVIQRVEMYNASLPVPLSL
                     AECRAIGKSIAKYTHRNFTPETFAQYVADTHTPEIQAARGRKGGKANSSENQSDKGKKS
                     AAVRWTANDDKRRRALDMYILGASTEDIAVAVGVSSRTIRRWMDNSGEWLTKKQIIKC"
                     /name="replication initiation protein"
     Typing          2146..2920
                     /name="Col156"
                     /typing="replicon"
                     /tool="MOB-suite"
                     /identity="96.907"
                     /coverage="83.0"
                     /evalue="0.0"
     Typing          250..1172
                     /name="MOBQ"
                     /typing="relaxase"
                     /tool="MOB-suite"
                     /identity="97.727"
                     /coverage="100.0"
                     /evalue="0.0"
ORIGIN
        1 tgcggtctgt tctccgagct tcctgatgaa tccgatccgt ttcttcagcc attcgatgtt
       61 gctgatgcgc atgttcgtgg tgctccctgg tgtttttttg cggtgtgttg tggtcgtgca
      121 gtatatcgct tgcggtcggc gggtgcaggg ggtatcttcc gtgctaattc gtaaaattag
      181 aaggaagcgc acttatatgt ttctctcctt cgtcgagaaa cagtgcgctc ctgcggaggg
      241 ctgaaaccgt ggcaacctat cacctcagcg ttaaatttgg tggcaagggg caggctgcaa
      301 accacgccga ttacatcgag cgcaaagaga aataccgcga ccgtcaggat ttggaatatt
      361 ccgcacacgg aaacatgccg gaatgggcgc gagataatcc ctcacatttc tggcaggctg
      421 ctgaccagtt tgaacgtgcg aacggttcga cctatcggga acttgaaatt gcattacccc
      481 gtgaactgac agcggaacag cgccttgaac tggtgcagga ttttgtacgt caggaagctg
      541 gcgaacggca cgcctggagt tttgccattc acaatccgaa agcgagcatt gacggcggcg
      601 aacagcctca tgcgcatatc atgatgagcc agcgtgtgaa tgatggcatt gaacgtacac
      661 cggagcagta tttccggcgc tataacgcca ggtatcccga gcggggaggt gcgaaaaagg
      721 attccggaag cctgactctc actcagcaaa aagagcagtt gcgggaattg cgaaaacgct
      781 gggaggtgaa gcacaacgaa catatgagaa agcatggctt tgaaaggggc ttcattgact
      841 gccggacgct gaaagaacag ggcattgaac gacgtcccga agtgcatctg ggttttgaag
      901 ctgccggacg gcttgatgat gcccagcgtc atgacatcat gcaaaaacgg tctgaaccgg
      961 actattcccg ccatcttgaa caggcgcgaa cggtcgggta tgacatcagg gaatggctgg
     1021 acactccggt taagcaacat gaactggtca gaaggctgca acatgatgtt gcgcgggagc
     1081 atggctttga catgagagac agagtgagca gacagaaccg aactgaacct gaacgggtta
     1141 aatcaccgtc acgtggattt tctatgggat tctgaacatg gccagcacag aagaaaaatt
     1201 actcacgctc ctgttatcgg tggagcatct gcaacatacc gcaatggagc aacagaaagc
     1261 tgttgctgat tctctggctg tggcaaggga aacacttcgc ggatatcggg atatttctga
     1321 cggtgtggca aaacaggtca gggatgaagt cagaaacgag gtgcagaagc tggatgttgc
     1381 agggctgata ggtgagcgca tcagccagga ttttcagcgg ctggaagagt cagtcgcaaa
     1441 catgaaggca aacgcggatg ccctgaacag ggatattgcg acaattcaca gcaatatcgt
     1501 gcaggaatac aacaccctta aagggtatag ctggaaatgg ctgggtgggg tgtcagtggc
     1561 ttttctggtt atgttctgtg tgcttggatg gggaatgaaa acaatgctcg acaggaacta
     1621 caacgccaca gcggcggtgt atcagaaagt tgtgacactg gaagataaac tggcggagaa
     1681 acctgtcacg ggcaagagcc ggaaaaactg acgcgcttcg cttgtccaac gcctcacgac
     1741 ccgcgaaaaa attccgcgtc ccgttcaccg ttttctgatg agaaagtttg ctgttttgac
     1801 ccgttcgccc ttctgaacgc tcgaaacaga tcgcgcatcg ctttcgtgca tagttatgca
     1861 acgcgctaaa aacgattctg acgcattttt ctggtttagc ctggtgtttc cttgtctttt
     1921 tgcgtttttt gcgccagaga gcgactgagg gcgttttaag gggggcgtac aacgggagtt
     1981 atggtaaatg gatcggtttt gcgggaaggc tcgacaggtt ttgttgttgg gggtagtgta
     2041 agcgactgaa aaacaaacgc ccctgaaatt cgtgtctctc cgccaagatt gtcacgagaa
     2101 tacaggggcg aggtcggtcg ataacctgga aggaatcgta acacatgagc gccgcgcttc
     2161 aatacttcga agaaaattta ccccaccgcc cctatcacac ggatgatctc gctttcggcc
     2221 ttcgcatctc cggcaaaggg cgtgcgcttc ttgcgcggta catccagcag aaccagcctc
     2281 atgcgcagtt ctggctggtt tttgacgttg accgcgaggg ggctgcgatt gactggagcg
     2341 accggaacgc ccccgcgccg aacatcaccg ttaaaaatcc tgtgaacgga cacgctcacc
     2401 tgctctacgc actcaacatc gccgtgagaa ccgcgcctga tgcctcggtt aaggcgctga
     2461 aatatgccgc agcggttgaa cgttcgctgt gtgagaaact ttgtgctgat gtgaactaca
     2521 gcggcctgat ttgcaaaaat ccgttccacc tggaatggca ggtgatggag tggcgcgagg
     2581 acgcctatac cctcgatgaa ctggcagatt atctcgattt gagcgcctca gagcgtcgta
     2641 gcatcgataa acattacggg atggggcgaa actgccacct gttcgaaatg acgcgcaaat
     2701 gggcttacag ggcgattcgt cagggctggc cagcgttctc acagtggctt gaagcggtga
     2761 tccagcgtgt cgaaatgtac aatgcatcgc ttcccgttcc gctttcactg gctgaatgtc
     2821 gggctattgg caagagcatt gcgaaataca cgcacaggaa cttcacgccg gaaactttcg
     2881 cacagtatgt ggctgatacg cacacgccag aaattcaggc agcacgcggt cgcaagggcg
     2941 ggaaggccaa ttcgtcagaa aatcagtcgg acaaagggaa aaaaagcgcc gctgttcggt
     3001 ggactgctaa cgacgacaaa cgtcgtaggg cgcttgatat gtatatcttg ggagcgtcaa
     3061 cggaagatat tgcagtggcg gttggtgtta gcagccggac tattcgacgc tggatggata
     3121 attctggaga atggctaacc aagaaacaaa taattaaatg ttagttaaca aagaagtaac
     3181 actacccccc gttttttgtt aatggggggt taaattcgcg gacatgaaca agcctatatc
     3241 agataacagc gcctttcggc gtctttttga gcagcgggct ttccggcggt tttctcctct
     3301 cagcccagca atggtgcggc ttaccgcatg attgaggtgg tcgtgctcgc cgcagtctca
     3361 tgaccgagcg tagcgagcga atgagcgagg aagcaccagg gaaccggaac acggatggag
     3421 gcacttacgc gtctgggttt ggggatgtct ccagatcgta cttaatttcc ttaagtgcct
     3481 gtaatatcct gtctttttta tagcatagct cgcctgtttt tgtgtctacc agtcctgctt
     3541 cgatcagtag cccagccgcg agaaagagtc ggtgattgcg ttctcgtcgt tgtttttttc
     3601 cctcgattcg tttttggacc gcctgttttc gttcgctctc ctgtgcctgt aagtcgtttt
     3661 tttccgctgt tgccagtacg tggaggagtt tgcgttcctg ttctgtgagt cctgcttcgt
     3721 tgtcgagcag gtcaataatc tgtctctgtc g
//
